Strain Fitness in Vibrio cholerae E7946 ATCC 55056 around CSW01_03000

Experiment: ICP3_phage_411_MOI_rep2

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCSW01_02990 and CSW01_02995 are separated by 235 nucleotidesCSW01_02995 and CSW01_03000 are separated by 27 nucleotidesCSW01_03000 and CSW01_03005 are separated by 27 nucleotidesCSW01_03005 and CSW01_03010 are separated by 41 nucleotides CSW01_02990: CSW01_02990 - signal recognition particle protein, at 593,406 to 594,791 _02990 CSW01_02995: CSW01_02995 - 30S ribosomal protein S16, at 595,027 to 595,275 _02995 CSW01_03000: CSW01_03000 - ribosome maturation factor RimM, at 595,303 to 595,857 _03000 CSW01_03005: CSW01_03005 - tRNA (guanosine(37)-N1)-methyltransferase TrmD, at 595,885 to 596,628 _03005 CSW01_03010: CSW01_03010 - 50S ribosomal protein L19, at 596,670 to 597,023 _03010 Position (kb) 595 596Strain fitness (log2 ratio) -2 -1 0 1at 594.863 kb on - strandat 594.865 kb on + strandat 594.865 kb on + strandat 594.865 kb on + strandat 594.873 kb on - strandat 594.873 kb on - strandat 594.873 kb on - strandat 594.873 kb on - strandat 594.873 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction ICP3_phage_411_MOI_rep2
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594,863 - +0.3
594,865 + +0.6
594,865 + -2.2
594,865 + +1.2
594,873 - +1.0
594,873 - +0.7
594,873 - -0.8
594,873 - -0.1
594,873 - -2.2

Or see this region's nucleotide sequence