Experiment: ICP3_phage_411_MOI_rep2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CSW01_02900 and CSW01_02905 are separated by 33 nucleotides CSW01_02905 and CSW01_02910 are separated by 22 nucleotides CSW01_02910 and CSW01_02915 are separated by 66 nucleotides CSW01_02915 and CSW01_02920 are separated by 55 nucleotides CSW01_02920 and CSW01_02925 are separated by 72 nucleotides CSW01_02925 and CSW01_02930 are separated by 56 nucleotides CSW01_02930 and CSW01_02935 are separated by 71 nucleotides CSW01_02935 and CSW01_02940 are separated by 366 nucleotides CSW01_02940 and CSW01_02945 are separated by 28 nucleotides
CSW01_02900: CSW01_02900 - tRNA-Ser, at 579,709 to 579,801
_02900
CSW01_02905: CSW01_02905 - tRNA-Arg, at 579,835 to 579,911
_02905
CSW01_02910: CSW01_02910 - tRNA-Ser, at 579,934 to 580,026
_02910
CSW01_02915: CSW01_02915 - tRNA-Arg, at 580,093 to 580,169
_02915
CSW01_02920: CSW01_02920 - tRNA-Arg, at 580,225 to 580,301
_02920
CSW01_02925: CSW01_02925 - tRNA-Arg, at 580,374 to 580,450
_02925
CSW01_02930: CSW01_02930 - tRNA-Arg, at 580,507 to 580,583
_02930
CSW01_02935: CSW01_02935 - tRNA-Arg, at 580,655 to 580,731
_02935
CSW01_02940: CSW01_02940 - oxaloacetate decarboxylase subunit gamma, at 581,098 to 581,358
_02940
CSW01_02945: CSW01_02945 - oxaloacetate decarboxylase subunit alpha, at 581,387 to 583,180
_02945
Position (kb) 580
581 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2 at 580.311 kb on + strand at 580.324 kb on + strand at 580.324 kb on + strand at 580.606 kb on + strand at 580.614 kb on - strand at 580.791 kb on - strand at 580.978 kb on - strand at 581.199 kb on + strand, within CSW01_02940 at 581.266 kb on - strand, within CSW01_02940 at 581.285 kb on + strand, within CSW01_02940 at 581.326 kb on + strand, within CSW01_02940 at 581.331 kb on + strand, within CSW01_02940 at 581.339 kb on - strand at 581.389 kb on - strand at 581.389 kb on - strand at 581.394 kb on + strand at 581.402 kb on - strand at 581.403 kb on - strand at 581.416 kb on - strand at 581.596 kb on - strand, within CSW01_02945 at 581.726 kb on + strand, within CSW01_02945
Per-strain Table
Position Strand Gene LocusTag Fraction ICP3_phage_411_MOI_rep2 remove 580,311 + -4.5 580,324 + +0.5 580,324 + +0.7 580,606 + +0.5 580,614 - -0.1 580,791 - +0.7 580,978 - +0.1 581,199 + CSW01_02940 0.39 -0.9 581,266 - CSW01_02940 0.64 -3.2 581,285 + CSW01_02940 0.72 +0.6 581,326 + CSW01_02940 0.87 +0.3 581,331 + CSW01_02940 0.89 -0.2 581,339 - -0.1 581,389 - +0.1 581,389 - +0.5 581,394 + +0.4 581,402 - +2.2 581,403 - -2.5 581,416 - -2.8 581,596 - CSW01_02945 0.12 -3.2 581,726 + CSW01_02945 0.19 -1.4
Or see this region's nucleotide sequence