Strain Fitness in Vibrio cholerae E7946 ATCC 55056 around CSW01_02585

Experiment: ICP3_phage_411_MOI_rep2

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCSW01_02580 and CSW01_02585 are separated by 62 nucleotidesCSW01_02585 and CSW01_02590 are separated by 60 nucleotides CSW01_02580: CSW01_02580 - DeoR/GlpR transcriptional regulator, at 515,300 to 516,082 _02580 CSW01_02585: CSW01_02585 - glutamine--fructose-6-phosphate aminotransferase, at 516,145 to 517,977 _02585 CSW01_02590: CSW01_02590 - ABC transporter substrate-binding protein, at 518,038 to 519,117 _02590 Position (kb) 516 517 518Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3at 515.382 kb on + strand, within CSW01_02580at 515.382 kb on + strand, within CSW01_02580at 515.435 kb on + strand, within CSW01_02580at 515.435 kb on + strand, within CSW01_02580at 515.557 kb on + strand, within CSW01_02580at 515.652 kb on + strand, within CSW01_02580at 515.660 kb on - strand, within CSW01_02580at 515.726 kb on + strand, within CSW01_02580at 515.792 kb on + strand, within CSW01_02580at 515.792 kb on + strand, within CSW01_02580at 515.837 kb on - strand, within CSW01_02580at 515.843 kb on + strand, within CSW01_02580at 515.938 kb on + strand, within CSW01_02580at 515.985 kb on + strand, within CSW01_02580at 515.985 kb on + strand, within CSW01_02580at 515.993 kb on - strand, within CSW01_02580at 515.993 kb on - strand, within CSW01_02580at 516.045 kb on + strandat 516.056 kb on + strandat 516.119 kb on - strandat 516.119 kb on - strandat 516.135 kb on + strandat 516.135 kb on + strandat 516.137 kb on + strandat 516.137 kb on + strandat 518.014 kb on - strandat 518.072 kb on - strandat 518.074 kb on - strandat 518.227 kb on - strand, within CSW01_02590at 518.248 kb on - strand, within CSW01_02590at 518.252 kb on + strand, within CSW01_02590at 518.260 kb on - strand, within CSW01_02590at 518.449 kb on - strand, within CSW01_02590at 518.451 kb on + strand, within CSW01_02590at 518.451 kb on + strand, within CSW01_02590at 518.460 kb on - strand, within CSW01_02590at 518.460 kb on - strand, within CSW01_02590at 518.471 kb on - strand, within CSW01_02590at 518.507 kb on + strand, within CSW01_02590at 518.507 kb on + strand, within CSW01_02590at 518.507 kb on + strand, within CSW01_02590at 518.507 kb on + strand, within CSW01_02590at 518.507 kb on + strand, within CSW01_02590at 518.507 kb on + strand, within CSW01_02590at 518.507 kb on + strand, within CSW01_02590at 518.507 kb on + strand, within CSW01_02590at 518.507 kb on + strand, within CSW01_02590at 518.507 kb on + strand, within CSW01_02590at 518.507 kb on + strand, within CSW01_02590at 518.507 kb on + strand, within CSW01_02590at 518.507 kb on + strand, within CSW01_02590at 518.507 kb on + strand, within CSW01_02590at 518.507 kb on + strand, within CSW01_02590at 518.507 kb on + strand, within CSW01_02590at 518.507 kb on + strand, within CSW01_02590at 518.515 kb on - strand, within CSW01_02590at 518.515 kb on - strand, within CSW01_02590at 518.515 kb on - strand, within CSW01_02590at 518.515 kb on - strand, within CSW01_02590at 518.515 kb on - strand, within CSW01_02590at 518.515 kb on - strand, within CSW01_02590at 518.515 kb on - strand, within CSW01_02590at 518.515 kb on - strand, within CSW01_02590at 518.515 kb on - strand, within CSW01_02590at 518.515 kb on - strand, within CSW01_02590at 518.515 kb on - strand, within CSW01_02590at 518.515 kb on - strand, within CSW01_02590at 518.515 kb on - strand, within CSW01_02590at 518.515 kb on - strand, within CSW01_02590at 518.515 kb on - strand, within CSW01_02590at 518.515 kb on - strand, within CSW01_02590at 518.538 kb on - strand, within CSW01_02590at 518.560 kb on + strand, within CSW01_02590at 518.589 kb on + strand, within CSW01_02590at 518.674 kb on + strand, within CSW01_02590at 518.681 kb on + strand, within CSW01_02590at 518.683 kb on + strand, within CSW01_02590at 518.688 kb on - strand, within CSW01_02590at 518.693 kb on + strand, within CSW01_02590at 518.701 kb on - strand, within CSW01_02590at 518.701 kb on - strand, within CSW01_02590at 518.701 kb on - strand, within CSW01_02590at 518.701 kb on - strand, within CSW01_02590at 518.701 kb on - strand, within CSW01_02590at 518.751 kb on - strand, within CSW01_02590at 518.751 kb on - strand, within CSW01_02590at 518.756 kb on - strand, within CSW01_02590at 518.756 kb on - strand, within CSW01_02590at 518.780 kb on - strand, within CSW01_02590at 518.822 kb on + strand, within CSW01_02590at 518.830 kb on - strand, within CSW01_02590at 518.860 kb on - strand, within CSW01_02590at 518.875 kb on + strand, within CSW01_02590at 518.880 kb on - strand, within CSW01_02590at 518.904 kb on - strand, within CSW01_02590at 518.976 kb on + strand, within CSW01_02590at 518.976 kb on + strand, within CSW01_02590at 518.976 kb on + strand, within CSW01_02590

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Per-strain Table

Position Strand Gene LocusTag Fraction ICP3_phage_411_MOI_rep2
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515,382 + CSW01_02580 0.10 +0.6
515,382 + CSW01_02580 0.10 -3.2
515,435 + CSW01_02580 0.17 +0.2
515,435 + CSW01_02580 0.17 -0.3
515,557 + CSW01_02580 0.33 +0.7
515,652 + CSW01_02580 0.45 +1.1
515,660 - CSW01_02580 0.46 -2.1
515,726 + CSW01_02580 0.54 +0.3
515,792 + CSW01_02580 0.63 -3.7
515,792 + CSW01_02580 0.63 -2.8
515,837 - CSW01_02580 0.69 -0.7
515,843 + CSW01_02580 0.69 +3.4
515,938 + CSW01_02580 0.81 +1.5
515,985 + CSW01_02580 0.87 +0.2
515,985 + CSW01_02580 0.87 +0.9
515,993 - CSW01_02580 0.89 +0.0
515,993 - CSW01_02580 0.89 +1.0
516,045 + -2.9
516,056 + +0.3
516,119 - +1.9
516,119 - +2.5
516,135 + -0.1
516,135 + -2.9
516,137 + -2.0
516,137 + -3.2
518,014 - -0.2
518,072 - -3.6
518,074 - -3.8
518,227 - CSW01_02590 0.17 -3.7
518,248 - CSW01_02590 0.19 +0.6
518,252 + CSW01_02590 0.20 -2.2
518,260 - CSW01_02590 0.21 +0.7
518,449 - CSW01_02590 0.38 +1.0
518,451 + CSW01_02590 0.38 +0.5
518,451 + CSW01_02590 0.38 -1.4
518,460 - CSW01_02590 0.39 +0.9
518,460 - CSW01_02590 0.39 -4.1
518,471 - CSW01_02590 0.40 -3.9
518,507 + CSW01_02590 0.43 -2.0
518,507 + CSW01_02590 0.43 +0.7
518,507 + CSW01_02590 0.43 +0.1
518,507 + CSW01_02590 0.43 -0.0
518,507 + CSW01_02590 0.43 +1.5
518,507 + CSW01_02590 0.43 +0.7
518,507 + CSW01_02590 0.43 -3.2
518,507 + CSW01_02590 0.43 +1.3
518,507 + CSW01_02590 0.43 +0.6
518,507 + CSW01_02590 0.43 +1.7
518,507 + CSW01_02590 0.43 +0.1
518,507 + CSW01_02590 0.43 -1.4
518,507 + CSW01_02590 0.43 +1.4
518,507 + CSW01_02590 0.43 +1.3
518,507 + CSW01_02590 0.43 +1.4
518,507 + CSW01_02590 0.43 +1.0
518,507 + CSW01_02590 0.43 +0.8
518,515 - CSW01_02590 0.44 -0.2
518,515 - CSW01_02590 0.44 -3.3
518,515 - CSW01_02590 0.44 +2.5
518,515 - CSW01_02590 0.44 +0.0
518,515 - CSW01_02590 0.44 +0.1
518,515 - CSW01_02590 0.44 +0.7
518,515 - CSW01_02590 0.44 -1.9
518,515 - CSW01_02590 0.44 +0.0
518,515 - CSW01_02590 0.44 +0.4
518,515 - CSW01_02590 0.44 -2.1
518,515 - CSW01_02590 0.44 -3.8
518,515 - CSW01_02590 0.44 -3.3
518,515 - CSW01_02590 0.44 +1.0
518,515 - CSW01_02590 0.44 -0.7
518,515 - CSW01_02590 0.44 +1.1
518,515 - CSW01_02590 0.44 +1.0
518,538 - CSW01_02590 0.46 -0.1
518,560 + CSW01_02590 0.48 +0.8
518,589 + CSW01_02590 0.51 +0.4
518,674 + CSW01_02590 0.59 +0.3
518,681 + CSW01_02590 0.60 -1.3
518,683 + CSW01_02590 0.60 +0.1
518,688 - CSW01_02590 0.60 +0.7
518,693 + CSW01_02590 0.61 +0.2
518,701 - CSW01_02590 0.61 +0.6
518,701 - CSW01_02590 0.61 -2.3
518,701 - CSW01_02590 0.61 -2.7
518,701 - CSW01_02590 0.61 -1.0
518,701 - CSW01_02590 0.61 +0.9
518,751 - CSW01_02590 0.66 -2.0
518,751 - CSW01_02590 0.66 -0.6
518,756 - CSW01_02590 0.66 -0.1
518,756 - CSW01_02590 0.66 +2.0
518,780 - CSW01_02590 0.69 -3.8
518,822 + CSW01_02590 0.73 -3.0
518,830 - CSW01_02590 0.73 -0.1
518,860 - CSW01_02590 0.76 +1.1
518,875 + CSW01_02590 0.78 +0.4
518,880 - CSW01_02590 0.78 +0.4
518,904 - CSW01_02590 0.80 +0.5
518,976 + CSW01_02590 0.87 +0.1
518,976 + CSW01_02590 0.87 -0.9
518,976 + CSW01_02590 0.87 -2.0

Or see this region's nucleotide sequence