Strain Fitness in Vibrio cholerae E7946 ATCC 55056 around CSW01_02440

Experiment: ICP3_phage_411_MOI_rep2

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCSW01_02430 and CSW01_02435 are separated by 69 nucleotidesCSW01_02435 and CSW01_02440 are separated by 45 nucleotidesCSW01_02440 and CSW01_02445 overlap by 1 nucleotidesCSW01_02445 and CSW01_02450 are separated by 53 nucleotides CSW01_02430: CSW01_02430 - non-canonical purine NTP pyrophosphatase, at 486,379 to 486,981 _02430 CSW01_02435: CSW01_02435 - DUF4426 domain-containing protein, at 487,051 to 487,482 _02435 CSW01_02440: CSW01_02440 - YggU family protein, at 487,528 to 487,818 _02440 CSW01_02445: CSW01_02445 - hypothetical protein, at 487,818 to 488,375 _02445 CSW01_02450: CSW01_02450 - pyrroline-5-carboxylate reductase, at 488,429 to 489,247 _02450 Position (kb) 487 488Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3 4 5at 486.613 kb on + strand, within CSW01_02430at 486.621 kb on - strand, within CSW01_02430at 486.657 kb on - strand, within CSW01_02430at 486.738 kb on - strand, within CSW01_02430at 486.908 kb on - strand, within CSW01_02430at 486.987 kb on + strandat 487.028 kb on - strandat 487.048 kb on + strandat 487.061 kb on + strandat 487.061 kb on + strandat 487.061 kb on + strandat 487.061 kb on + strandat 487.061 kb on + strandat 487.061 kb on + strandat 487.069 kb on - strandat 487.069 kb on - strandat 487.069 kb on - strandat 487.099 kb on + strand, within CSW01_02435at 487.129 kb on + strand, within CSW01_02435at 487.129 kb on + strand, within CSW01_02435at 487.187 kb on + strand, within CSW01_02435at 487.187 kb on + strand, within CSW01_02435at 487.197 kb on + strand, within CSW01_02435at 487.230 kb on + strand, within CSW01_02435at 487.268 kb on + strand, within CSW01_02435at 487.343 kb on - strand, within CSW01_02435at 487.353 kb on + strand, within CSW01_02435at 487.375 kb on + strand, within CSW01_02435at 487.420 kb on - strand, within CSW01_02435at 487.422 kb on + strand, within CSW01_02435at 487.441 kb on + strandat 487.620 kb on + strand, within CSW01_02440at 487.628 kb on - strand, within CSW01_02440at 487.636 kb on - strand, within CSW01_02440at 487.640 kb on + strand, within CSW01_02440at 487.719 kb on - strand, within CSW01_02440at 487.732 kb on - strand, within CSW01_02440at 487.769 kb on + strand, within CSW01_02440at 487.782 kb on + strand, within CSW01_02440at 487.796 kb on + strandat 487.797 kb on - strandat 487.797 kb on - strandat 487.801 kb on + strandat 487.824 kb on - strandat 487.832 kb on + strandat 487.837 kb on + strandat 487.837 kb on + strandat 487.845 kb on - strandat 487.887 kb on - strand, within CSW01_02445at 487.887 kb on - strand, within CSW01_02445at 487.898 kb on - strand, within CSW01_02445at 487.904 kb on + strand, within CSW01_02445at 487.912 kb on - strand, within CSW01_02445at 487.912 kb on - strand, within CSW01_02445at 487.912 kb on - strand, within CSW01_02445at 487.912 kb on - strand, within CSW01_02445at 488.008 kb on - strand, within CSW01_02445at 488.010 kb on + strand, within CSW01_02445at 488.010 kb on + strand, within CSW01_02445at 488.059 kb on + strand, within CSW01_02445at 488.059 kb on + strand, within CSW01_02445at 488.067 kb on - strand, within CSW01_02445at 488.093 kb on + strand, within CSW01_02445at 488.098 kb on + strand, within CSW01_02445at 488.108 kb on + strand, within CSW01_02445at 488.108 kb on + strand, within CSW01_02445at 488.111 kb on - strand, within CSW01_02445at 488.111 kb on - strand, within CSW01_02445at 488.141 kb on - strand, within CSW01_02445at 488.197 kb on - strand, within CSW01_02445at 488.210 kb on + strand, within CSW01_02445at 488.218 kb on - strand, within CSW01_02445at 488.227 kb on + strand, within CSW01_02445at 488.324 kb on + strandat 488.324 kb on + strandat 488.332 kb on - strandat 488.506 kb on - strandat 488.509 kb on + strandat 488.516 kb on + strand, within CSW01_02450at 488.584 kb on + strand, within CSW01_02450at 488.592 kb on - strand, within CSW01_02450at 488.595 kb on + strand, within CSW01_02450at 488.595 kb on + strand, within CSW01_02450at 488.603 kb on - strand, within CSW01_02450at 488.663 kb on + strand, within CSW01_02450at 488.755 kb on - strand, within CSW01_02450at 488.777 kb on + strand, within CSW01_02450at 488.777 kb on - strand, within CSW01_02450at 488.777 kb on - strand, within CSW01_02450at 488.808 kb on - strand, within CSW01_02450at 488.813 kb on + strand, within CSW01_02450at 488.813 kb on + strand, within CSW01_02450

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Per-strain Table

Position Strand Gene LocusTag Fraction ICP3_phage_411_MOI_rep2
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486,613 + CSW01_02430 0.39 -1.0
486,621 - CSW01_02430 0.40 -2.2
486,657 - CSW01_02430 0.46 +0.5
486,738 - CSW01_02430 0.60 -3.4
486,908 - CSW01_02430 0.88 -0.5
486,987 + +0.6
487,028 - -3.2
487,048 + -0.9
487,061 + -1.3
487,061 + +0.1
487,061 + -0.9
487,061 + +0.1
487,061 + -3.5
487,061 + -1.3
487,069 - -0.3
487,069 - -3.8
487,069 - +0.8
487,099 + CSW01_02435 0.11 +0.3
487,129 + CSW01_02435 0.18 +1.4
487,129 + CSW01_02435 0.18 +1.6
487,187 + CSW01_02435 0.31 -0.2
487,187 + CSW01_02435 0.31 -0.7
487,197 + CSW01_02435 0.34 +1.0
487,230 + CSW01_02435 0.41 +1.3
487,268 + CSW01_02435 0.50 -3.0
487,343 - CSW01_02435 0.68 -3.5
487,353 + CSW01_02435 0.70 +0.7
487,375 + CSW01_02435 0.75 +1.0
487,420 - CSW01_02435 0.85 +0.7
487,422 + CSW01_02435 0.86 +1.3
487,441 + +5.4
487,620 + CSW01_02440 0.32 +0.5
487,628 - CSW01_02440 0.34 +0.0
487,636 - CSW01_02440 0.37 +0.5
487,640 + CSW01_02440 0.38 +1.6
487,719 - CSW01_02440 0.66 -1.6
487,732 - CSW01_02440 0.70 -2.7
487,769 + CSW01_02440 0.83 +0.6
487,782 + CSW01_02440 0.87 +1.6
487,796 + -3.5
487,797 - -3.2
487,797 - -1.5
487,801 + +1.4
487,824 - +0.3
487,832 + -1.6
487,837 + -2.7
487,837 + -0.4
487,845 - -1.3
487,887 - CSW01_02445 0.12 +1.0
487,887 - CSW01_02445 0.12 -1.2
487,898 - CSW01_02445 0.14 -3.4
487,904 + CSW01_02445 0.15 -1.9
487,912 - CSW01_02445 0.17 -2.4
487,912 - CSW01_02445 0.17 -2.4
487,912 - CSW01_02445 0.17 -1.7
487,912 - CSW01_02445 0.17 -1.6
488,008 - CSW01_02445 0.34 -0.1
488,010 + CSW01_02445 0.34 -0.9
488,010 + CSW01_02445 0.34 +2.0
488,059 + CSW01_02445 0.43 -3.1
488,059 + CSW01_02445 0.43 +1.1
488,067 - CSW01_02445 0.45 -0.0
488,093 + CSW01_02445 0.49 +0.1
488,098 + CSW01_02445 0.50 -1.9
488,108 + CSW01_02445 0.52 +1.4
488,108 + CSW01_02445 0.52 +1.2
488,111 - CSW01_02445 0.53 +0.5
488,111 - CSW01_02445 0.53 -0.1
488,141 - CSW01_02445 0.58 -2.5
488,197 - CSW01_02445 0.68 -0.5
488,210 + CSW01_02445 0.70 +0.4
488,218 - CSW01_02445 0.72 +1.1
488,227 + CSW01_02445 0.73 +0.6
488,324 + -3.9
488,324 + +0.6
488,332 - -1.1
488,506 - -0.3
488,509 + -2.7
488,516 + CSW01_02450 0.11 -0.4
488,584 + CSW01_02450 0.19 +0.8
488,592 - CSW01_02450 0.20 -1.2
488,595 + CSW01_02450 0.20 +0.6
488,595 + CSW01_02450 0.20 -0.7
488,603 - CSW01_02450 0.21 +0.3
488,663 + CSW01_02450 0.29 -0.2
488,755 - CSW01_02450 0.40 -3.7
488,777 + CSW01_02450 0.42 -1.5
488,777 - CSW01_02450 0.42 -1.7
488,777 - CSW01_02450 0.42 +0.6
488,808 - CSW01_02450 0.46 -0.7
488,813 + CSW01_02450 0.47 -3.2
488,813 + CSW01_02450 0.47 -4.3

Or see this region's nucleotide sequence