Experiment: ICP3_phage_411_MOI_rep2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CSW01_02275 and CSW01_02280 are separated by 148 nucleotides CSW01_02280 and CSW01_02285 are separated by 270 nucleotides CSW01_02285 and CSW01_02290 are separated by 20 nucleotides
CSW01_02275: CSW01_02275 - arginine:ornithine antiporter, at 462,393 to 463,799
_02275
CSW01_02280: CSW01_02280 - octaprenyl diphosphate synthase, at 463,948 to 464,919
_02280
CSW01_02285: CSW01_02285 - 50S ribosomal protein L21, at 465,190 to 465,501
_02285
CSW01_02290: CSW01_02290 - 50S ribosomal protein L27, at 465,522 to 465,782
_02290
Position (kb) 463
464
465 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2 at 462.976 kb on + strand, within CSW01_02275 at 462.989 kb on - strand, within CSW01_02275 at 462.990 kb on + strand, within CSW01_02275 at 462.995 kb on + strand, within CSW01_02275 at 462.995 kb on + strand, within CSW01_02275 at 463.045 kb on - strand, within CSW01_02275 at 463.045 kb on - strand, within CSW01_02275 at 463.079 kb on - strand, within CSW01_02275 at 463.120 kb on - strand, within CSW01_02275 at 463.302 kb on + strand, within CSW01_02275 at 463.400 kb on + strand, within CSW01_02275 at 463.400 kb on + strand, within CSW01_02275 at 463.528 kb on + strand, within CSW01_02275 at 463.528 kb on + strand, within CSW01_02275 at 463.530 kb on - strand, within CSW01_02275 at 463.536 kb on - strand, within CSW01_02275 at 463.539 kb on + strand, within CSW01_02275 at 463.544 kb on + strand, within CSW01_02275 at 463.600 kb on - strand, within CSW01_02275 at 463.641 kb on - strand, within CSW01_02275 at 463.641 kb on - strand, within CSW01_02275 at 463.660 kb on - strand at 463.702 kb on + strand at 463.702 kb on + strand at 463.702 kb on + strand at 463.710 kb on - strand at 463.744 kb on + strand at 463.744 kb on + strand at 463.746 kb on + strand at 463.752 kb on - strand at 463.827 kb on + strand at 463.835 kb on - strand at 465.004 kb on - strand at 465.008 kb on + strand at 465.008 kb on + strand at 465.875 kb on + strand at 465.882 kb on + strand at 465.882 kb on + strand at 465.889 kb on + strand at 465.896 kb on + strand at 465.896 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction ICP3_phage_411_MOI_rep2 remove 462,976 + CSW01_02275 0.41 -3.7 462,989 - CSW01_02275 0.42 +2.2 462,990 + CSW01_02275 0.42 +0.3 462,995 + CSW01_02275 0.43 +2.4 462,995 + CSW01_02275 0.43 +0.3 463,045 - CSW01_02275 0.46 +0.8 463,045 - CSW01_02275 0.46 +0.1 463,079 - CSW01_02275 0.49 +1.1 463,120 - CSW01_02275 0.52 +0.0 463,302 + CSW01_02275 0.65 +0.6 463,400 + CSW01_02275 0.72 +0.2 463,400 + CSW01_02275 0.72 -1.8 463,528 + CSW01_02275 0.81 +0.2 463,528 + CSW01_02275 0.81 +0.4 463,530 - CSW01_02275 0.81 -1.1 463,536 - CSW01_02275 0.81 +0.9 463,539 + CSW01_02275 0.81 -1.4 463,544 + CSW01_02275 0.82 +0.9 463,600 - CSW01_02275 0.86 +0.7 463,641 - CSW01_02275 0.89 +1.0 463,641 - CSW01_02275 0.89 -2.5 463,660 - +0.7 463,702 + +0.2 463,702 + +0.6 463,702 + -1.3 463,710 - -4.4 463,744 + -1.9 463,744 + +1.4 463,746 + -0.0 463,752 - -2.0 463,827 + -0.8 463,835 - -1.9 465,004 - -0.0 465,008 + -0.6 465,008 + -1.9 465,875 + -0.4 465,882 + -0.1 465,882 + +1.5 465,889 + -1.8 465,896 + -4.0 465,896 + -0.6
Or see this region's nucleotide sequence