Strain Fitness in Vibrio cholerae E7946 ATCC 55056 around CSW01_02225

Experiment: ICP3_phage_411_MOI_rep2

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCSW01_02220 and CSW01_02225 are separated by 95 nucleotidesCSW01_02225 and CSW01_02230 are separated by 726 nucleotides CSW01_02220: CSW01_02220 - metalloprotease TldD, at 450,140 to 451,585 _02220 CSW01_02225: CSW01_02225 - arginine deiminase, at 451,681 to 452,904 _02225 CSW01_02230: CSW01_02230 - ribonuclease E inhibitor RraB, at 453,631 to 454,053 _02230 Position (kb) 451 452 453Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3at 450.858 kb on - strand, within CSW01_02220at 450.936 kb on - strand, within CSW01_02220at 451.018 kb on + strand, within CSW01_02220at 451.026 kb on - strand, within CSW01_02220at 451.042 kb on + strand, within CSW01_02220at 451.062 kb on + strand, within CSW01_02220at 451.064 kb on + strand, within CSW01_02220at 451.099 kb on - strand, within CSW01_02220at 451.130 kb on + strand, within CSW01_02220at 451.138 kb on - strand, within CSW01_02220at 451.167 kb on + strand, within CSW01_02220at 451.188 kb on - strand, within CSW01_02220at 451.206 kb on - strand, within CSW01_02220at 451.216 kb on - strand, within CSW01_02220at 451.236 kb on - strand, within CSW01_02220at 451.255 kb on + strand, within CSW01_02220at 451.260 kb on + strand, within CSW01_02220at 451.260 kb on + strand, within CSW01_02220at 451.260 kb on + strand, within CSW01_02220at 451.260 kb on + strand, within CSW01_02220at 451.260 kb on + strand, within CSW01_02220at 451.260 kb on + strand, within CSW01_02220at 451.260 kb on + strand, within CSW01_02220at 451.262 kb on + strand, within CSW01_02220at 451.262 kb on + strand, within CSW01_02220at 451.268 kb on - strand, within CSW01_02220at 451.268 kb on - strand, within CSW01_02220at 451.268 kb on - strand, within CSW01_02220at 451.268 kb on - strand, within CSW01_02220at 451.268 kb on - strand, within CSW01_02220at 451.488 kb on - strandat 451.496 kb on - strandat 451.496 kb on - strandat 451.562 kb on - strandat 451.578 kb on - strandat 451.578 kb on - strandat 451.583 kb on - strandat 451.618 kb on + strandat 451.621 kb on - strandat 451.698 kb on + strandat 451.759 kb on + strandat 451.767 kb on - strandat 451.798 kb on + strandat 451.806 kb on - strand, within CSW01_02225at 451.807 kb on - strand, within CSW01_02225at 451.807 kb on - strand, within CSW01_02225at 451.819 kb on + strand, within CSW01_02225at 451.837 kb on - strand, within CSW01_02225at 451.872 kb on + strand, within CSW01_02225at 451.899 kb on + strand, within CSW01_02225at 451.949 kb on - strand, within CSW01_02225at 451.966 kb on + strand, within CSW01_02225at 451.966 kb on + strand, within CSW01_02225at 452.006 kb on - strand, within CSW01_02225at 452.040 kb on + strand, within CSW01_02225at 452.048 kb on - strand, within CSW01_02225at 452.151 kb on - strand, within CSW01_02225at 452.153 kb on + strand, within CSW01_02225at 452.161 kb on - strand, within CSW01_02225at 452.200 kb on - strand, within CSW01_02225at 452.236 kb on - strand, within CSW01_02225at 452.249 kb on + strand, within CSW01_02225at 452.261 kb on + strand, within CSW01_02225at 452.286 kb on - strand, within CSW01_02225at 452.399 kb on + strand, within CSW01_02225at 452.408 kb on + strand, within CSW01_02225at 452.436 kb on - strand, within CSW01_02225at 452.547 kb on + strand, within CSW01_02225at 452.547 kb on + strand, within CSW01_02225at 452.580 kb on + strand, within CSW01_02225at 452.580 kb on + strand, within CSW01_02225at 452.580 kb on + strand, within CSW01_02225at 452.588 kb on - strand, within CSW01_02225at 452.611 kb on + strand, within CSW01_02225at 452.630 kb on + strand, within CSW01_02225at 452.658 kb on + strand, within CSW01_02225at 452.712 kb on + strand, within CSW01_02225at 452.712 kb on - strand, within CSW01_02225at 452.714 kb on + strand, within CSW01_02225at 452.720 kb on - strand, within CSW01_02225at 452.799 kb on + strandat 452.799 kb on + strandat 452.868 kb on + strandat 452.877 kb on + strandat 452.885 kb on - strandat 452.889 kb on + strandat 452.941 kb on - strandat 452.957 kb on + strandat 452.957 kb on + strandat 452.957 kb on + strandat 452.957 kb on + strandat 452.965 kb on - strandat 452.965 kb on - strandat 453.003 kb on + strandat 453.022 kb on - strandat 453.022 kb on - strandat 453.022 kb on - strandat 453.022 kb on - strandat 453.035 kb on + strandat 453.095 kb on - strandat 453.284 kb on + strandat 453.284 kb on + strandat 453.284 kb on + strandat 453.284 kb on + strandat 453.284 kb on + strandat 453.292 kb on - strandat 453.292 kb on - strandat 453.292 kb on - strandat 453.349 kb on - strandat 453.358 kb on + strandat 453.366 kb on - strandat 453.453 kb on - strandat 453.453 kb on - strandat 453.467 kb on - strandat 453.507 kb on + strandat 453.531 kb on - strandat 453.542 kb on - strandat 453.627 kb on + strandat 453.635 kb on - strandat 453.635 kb on - strandat 453.635 kb on - strandat 453.635 kb on - strandat 453.703 kb on + strand, within CSW01_02230at 453.711 kb on - strand, within CSW01_02230at 453.714 kb on + strand, within CSW01_02230at 453.878 kb on + strand, within CSW01_02230at 453.878 kb on + strand, within CSW01_02230at 453.886 kb on - strand, within CSW01_02230at 453.886 kb on - strand, within CSW01_02230at 453.886 kb on - strand, within CSW01_02230

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Per-strain Table

Position Strand Gene LocusTag Fraction ICP3_phage_411_MOI_rep2
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450,858 - CSW01_02220 0.50 +1.8
450,936 - CSW01_02220 0.55 -1.0
451,018 + CSW01_02220 0.61 +0.3
451,026 - CSW01_02220 0.61 +0.6
451,042 + CSW01_02220 0.62 +1.0
451,062 + CSW01_02220 0.64 -2.0
451,064 + CSW01_02220 0.64 -0.4
451,099 - CSW01_02220 0.66 -2.5
451,130 + CSW01_02220 0.68 -3.5
451,138 - CSW01_02220 0.69 -1.4
451,167 + CSW01_02220 0.71 +1.1
451,188 - CSW01_02220 0.72 +0.1
451,206 - CSW01_02220 0.74 +1.6
451,216 - CSW01_02220 0.74 +0.5
451,236 - CSW01_02220 0.76 -0.3
451,255 + CSW01_02220 0.77 -0.3
451,260 + CSW01_02220 0.77 -0.4
451,260 + CSW01_02220 0.77 -1.4
451,260 + CSW01_02220 0.77 -1.0
451,260 + CSW01_02220 0.77 -1.7
451,260 + CSW01_02220 0.77 -0.1
451,260 + CSW01_02220 0.77 +0.2
451,260 + CSW01_02220 0.77 +1.9
451,262 + CSW01_02220 0.78 -0.3
451,262 + CSW01_02220 0.78 +1.9
451,268 - CSW01_02220 0.78 -3.2
451,268 - CSW01_02220 0.78 -0.5
451,268 - CSW01_02220 0.78 +0.8
451,268 - CSW01_02220 0.78 +0.3
451,268 - CSW01_02220 0.78 +1.2
451,488 - -0.2
451,496 - +0.1
451,496 - +0.1
451,562 - -0.4
451,578 - -2.4
451,578 - +1.8
451,583 - -0.8
451,618 + +0.0
451,621 - -1.9
451,698 + -0.8
451,759 + +1.0
451,767 - +0.4
451,798 + +2.5
451,806 - CSW01_02225 0.10 +1.1
451,807 - CSW01_02225 0.10 -1.5
451,807 - CSW01_02225 0.10 +1.0
451,819 + CSW01_02225 0.11 +0.4
451,837 - CSW01_02225 0.13 +1.1
451,872 + CSW01_02225 0.16 +1.4
451,899 + CSW01_02225 0.18 -0.7
451,949 - CSW01_02225 0.22 +1.5
451,966 + CSW01_02225 0.23 -0.2
451,966 + CSW01_02225 0.23 +0.6
452,006 - CSW01_02225 0.27 -0.6
452,040 + CSW01_02225 0.29 +0.6
452,048 - CSW01_02225 0.30 +3.3
452,151 - CSW01_02225 0.38 +0.0
452,153 + CSW01_02225 0.39 -0.7
452,161 - CSW01_02225 0.39 +1.5
452,200 - CSW01_02225 0.42 +1.1
452,236 - CSW01_02225 0.45 +1.0
452,249 + CSW01_02225 0.46 +0.9
452,261 + CSW01_02225 0.47 -1.5
452,286 - CSW01_02225 0.49 -2.5
452,399 + CSW01_02225 0.59 +0.6
452,408 + CSW01_02225 0.59 -1.9
452,436 - CSW01_02225 0.62 -0.1
452,547 + CSW01_02225 0.71 +1.0
452,547 + CSW01_02225 0.71 -1.3
452,580 + CSW01_02225 0.73 -0.5
452,580 + CSW01_02225 0.73 +0.4
452,580 + CSW01_02225 0.73 +0.7
452,588 - CSW01_02225 0.74 -1.7
452,611 + CSW01_02225 0.76 +0.9
452,630 + CSW01_02225 0.78 +0.3
452,658 + CSW01_02225 0.80 -4.0
452,712 + CSW01_02225 0.84 -2.7
452,712 - CSW01_02225 0.84 +1.2
452,714 + CSW01_02225 0.84 -2.3
452,720 - CSW01_02225 0.85 -1.6
452,799 + -0.6
452,799 + -0.0
452,868 + +1.5
452,877 + +2.1
452,885 - -2.9
452,889 + +1.4
452,941 - -2.4
452,957 + +1.1
452,957 + +1.2
452,957 + -1.6
452,957 + -1.8
452,965 - +1.0
452,965 - -3.5
453,003 + -2.2
453,022 - -0.0
453,022 - +0.3
453,022 - +0.5
453,022 - +0.6
453,035 + -2.8
453,095 - -0.7
453,284 + +1.3
453,284 + -0.4
453,284 + +1.2
453,284 + +0.2
453,284 + +2.0
453,292 - -3.2
453,292 - -3.5
453,292 - -0.1
453,349 - +0.2
453,358 + +1.2
453,366 - -1.9
453,453 - +1.0
453,453 - -0.7
453,467 - +0.4
453,507 + +0.9
453,531 - +1.1
453,542 - +0.9
453,627 + +0.4
453,635 - -0.0
453,635 - -0.6
453,635 - -0.3
453,635 - -3.3
453,703 + CSW01_02230 0.17 -1.9
453,711 - CSW01_02230 0.19 -1.4
453,714 + CSW01_02230 0.20 -0.8
453,878 + CSW01_02230 0.58 -1.6
453,878 + CSW01_02230 0.58 -1.9
453,886 - CSW01_02230 0.60 -2.8
453,886 - CSW01_02230 0.60 -3.6
453,886 - CSW01_02230 0.60 -1.6

Or see this region's nucleotide sequence