Experiment: ICP3_phage_411_MOI_rep2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CSW01_02190 and CSW01_02195 overlap by 14 nucleotides CSW01_02195 and CSW01_02200 overlap by 58 nucleotides CSW01_02200 and CSW01_02205 are separated by 25 nucleotides
CSW01_02190: CSW01_02190 - rod shape-determining protein MreC, at 441,996 to 442,886
_02190
CSW01_02195: CSW01_02195 - rod shape-determining protein MreD, at 442,873 to 443,361
_02195
CSW01_02200: CSW01_02200 - septum formation inhibitor Maf, at 443,304 to 443,921
_02200
CSW01_02205: CSW01_02205 - ribonuclease E/G, at 443,947 to 445,416
_02205
Position (kb) 443
444 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3 at 442.868 kb on + strand at 443.400 kb on - strand, within CSW01_02200 at 443.400 kb on - strand, within CSW01_02200 at 443.409 kb on - strand, within CSW01_02200 at 443.520 kb on + strand, within CSW01_02200 at 443.528 kb on - strand, within CSW01_02200 at 443.528 kb on - strand, within CSW01_02200 at 443.535 kb on + strand, within CSW01_02200 at 443.666 kb on - strand, within CSW01_02200 at 443.670 kb on + strand, within CSW01_02200 at 443.678 kb on - strand, within CSW01_02200 at 443.692 kb on - strand, within CSW01_02200 at 443.721 kb on - strand, within CSW01_02200 at 443.733 kb on - strand, within CSW01_02200 at 443.733 kb on - strand, within CSW01_02200 at 443.738 kb on + strand, within CSW01_02200 at 443.740 kb on - strand, within CSW01_02200 at 443.782 kb on + strand, within CSW01_02200 at 443.782 kb on + strand, within CSW01_02200 at 443.782 kb on + strand, within CSW01_02200 at 443.782 kb on + strand, within CSW01_02200 at 443.784 kb on + strand, within CSW01_02200 at 443.790 kb on - strand, within CSW01_02200 at 443.790 kb on - strand, within CSW01_02200 at 443.830 kb on - strand, within CSW01_02200 at 443.888 kb on + strand at 443.946 kb on + strand at 443.951 kb on + strand at 443.951 kb on + strand at 443.954 kb on - strand at 444.084 kb on - strand at 444.194 kb on + strand, within CSW01_02205 at 444.242 kb on - strand, within CSW01_02205 at 444.244 kb on + strand, within CSW01_02205 at 444.244 kb on + strand, within CSW01_02205 at 444.244 kb on + strand, within CSW01_02205 at 444.244 kb on + strand, within CSW01_02205 at 444.252 kb on - strand, within CSW01_02205 at 444.292 kb on - strand, within CSW01_02205 at 444.292 kb on - strand, within CSW01_02205 at 444.358 kb on - strand, within CSW01_02205 at 444.558 kb on + strand, within CSW01_02205 at 444.563 kb on + strand, within CSW01_02205 at 444.563 kb on + strand, within CSW01_02205 at 444.568 kb on + strand, within CSW01_02205 at 444.571 kb on - strand, within CSW01_02205 at 444.571 kb on - strand, within CSW01_02205 at 444.576 kb on - strand, within CSW01_02205 at 444.576 kb on - strand, within CSW01_02205 at 444.669 kb on + strand, within CSW01_02205 at 444.676 kb on + strand, within CSW01_02205 at 444.686 kb on - strand, within CSW01_02205 at 444.713 kb on + strand, within CSW01_02205 at 444.721 kb on - strand, within CSW01_02205 at 444.721 kb on - strand, within CSW01_02205 at 444.834 kb on + strand, within CSW01_02205 at 444.842 kb on - strand, within CSW01_02205
Per-strain Table
Position Strand Gene LocusTag Fraction ICP3_phage_411_MOI_rep2 remove 442,868 + +1.2 443,400 - CSW01_02200 0.16 -0.3 443,400 - CSW01_02200 0.16 -3.5 443,409 - CSW01_02200 0.17 -0.1 443,520 + CSW01_02200 0.35 +0.9 443,528 - CSW01_02200 0.36 +0.2 443,528 - CSW01_02200 0.36 -2.4 443,535 + CSW01_02200 0.37 -1.0 443,666 - CSW01_02200 0.59 -1.4 443,670 + CSW01_02200 0.59 -2.5 443,678 - CSW01_02200 0.61 -3.7 443,692 - CSW01_02200 0.63 +1.1 443,721 - CSW01_02200 0.67 -0.4 443,733 - CSW01_02200 0.69 +0.8 443,733 - CSW01_02200 0.69 -3.0 443,738 + CSW01_02200 0.70 -1.0 443,740 - CSW01_02200 0.71 +1.0 443,782 + CSW01_02200 0.77 +1.5 443,782 + CSW01_02200 0.77 -2.9 443,782 + CSW01_02200 0.77 +0.6 443,782 + CSW01_02200 0.77 -0.7 443,784 + CSW01_02200 0.78 +0.8 443,790 - CSW01_02200 0.79 -3.9 443,790 - CSW01_02200 0.79 -3.6 443,830 - CSW01_02200 0.85 +0.1 443,888 + -2.9 443,946 + +1.1 443,951 + +0.7 443,951 + +0.3 443,954 - +3.3 444,084 - -2.9 444,194 + CSW01_02205 0.17 -2.0 444,242 - CSW01_02205 0.20 -2.2 444,244 + CSW01_02205 0.20 -0.8 444,244 + CSW01_02205 0.20 -0.8 444,244 + CSW01_02205 0.20 -3.5 444,244 + CSW01_02205 0.20 -3.6 444,252 - CSW01_02205 0.21 -3.1 444,292 - CSW01_02205 0.23 -0.9 444,292 - CSW01_02205 0.23 -1.1 444,358 - CSW01_02205 0.28 -2.9 444,558 + CSW01_02205 0.42 -2.9 444,563 + CSW01_02205 0.42 -1.8 444,563 + CSW01_02205 0.42 -1.1 444,568 + CSW01_02205 0.42 +0.3 444,571 - CSW01_02205 0.42 -0.7 444,571 - CSW01_02205 0.42 -0.1 444,576 - CSW01_02205 0.43 -2.7 444,576 - CSW01_02205 0.43 +0.4 444,669 + CSW01_02205 0.49 +1.0 444,676 + CSW01_02205 0.50 -2.3 444,686 - CSW01_02205 0.50 +0.5 444,713 + CSW01_02205 0.52 -1.5 444,721 - CSW01_02205 0.53 -3.0 444,721 - CSW01_02205 0.53 -4.3 444,834 + CSW01_02205 0.60 -1.1 444,842 - CSW01_02205 0.61 -3.0
Or see this region's nucleotide sequence