Strain Fitness in Vibrio cholerae E7946 ATCC 55056 around CSW01_02135

Experiment: ICP3_phage_411_MOI_rep2

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCSW01_02130 and CSW01_02135 overlap by 11 nucleotidesCSW01_02135 and CSW01_02140 are separated by 8 nucleotides CSW01_02130: CSW01_02130 - MSHA biogenesis protein MshN, at 428,956 to 430,125 _02130 CSW01_02135: CSW01_02135 - MSHA biogenesis protein MshE, at 430,115 to 431,842 _02135 CSW01_02140: CSW01_02140 - type II secretion system F family protein, at 431,851 to 433,074 _02140 Position (kb) 430 431 432Strain fitness (log2 ratio) -5 -4 -3 -2 -1 0 1 2 3at 429.118 kb on - strand, within CSW01_02130at 429.128 kb on + strand, within CSW01_02130at 429.129 kb on + strand, within CSW01_02130at 429.155 kb on + strand, within CSW01_02130at 429.155 kb on + strand, within CSW01_02130at 429.157 kb on + strand, within CSW01_02130at 429.165 kb on - strand, within CSW01_02130at 429.207 kb on + strand, within CSW01_02130at 429.270 kb on + strand, within CSW01_02130at 429.351 kb on - strand, within CSW01_02130at 429.351 kb on - strand, within CSW01_02130at 429.361 kb on - strand, within CSW01_02130at 429.407 kb on + strand, within CSW01_02130at 429.407 kb on + strand, within CSW01_02130at 429.414 kb on + strand, within CSW01_02130at 429.415 kb on - strand, within CSW01_02130at 429.430 kb on + strand, within CSW01_02130at 429.430 kb on + strand, within CSW01_02130at 429.430 kb on + strand, within CSW01_02130at 429.457 kb on - strand, within CSW01_02130at 429.464 kb on - strand, within CSW01_02130at 429.478 kb on + strand, within CSW01_02130at 429.478 kb on + strand, within CSW01_02130at 429.478 kb on + strand, within CSW01_02130at 429.478 kb on + strand, within CSW01_02130at 429.478 kb on + strand, within CSW01_02130at 429.485 kb on - strand, within CSW01_02130at 429.486 kb on - strand, within CSW01_02130at 429.486 kb on - strand, within CSW01_02130at 429.486 kb on - strand, within CSW01_02130at 429.486 kb on - strand, within CSW01_02130at 429.510 kb on - strand, within CSW01_02130at 429.512 kb on + strand, within CSW01_02130at 429.520 kb on - strand, within CSW01_02130at 429.535 kb on - strand, within CSW01_02130at 429.541 kb on - strand, within CSW01_02130at 429.556 kb on + strand, within CSW01_02130at 429.607 kb on + strand, within CSW01_02130at 429.630 kb on + strand, within CSW01_02130at 429.630 kb on + strand, within CSW01_02130at 429.630 kb on + strand, within CSW01_02130at 429.630 kb on + strand, within CSW01_02130at 429.630 kb on + strand, within CSW01_02130at 429.630 kb on + strand, within CSW01_02130at 429.630 kb on + strand, within CSW01_02130at 429.638 kb on - strand, within CSW01_02130at 429.638 kb on - strand, within CSW01_02130at 429.638 kb on - strand, within CSW01_02130at 429.699 kb on - strand, within CSW01_02130at 429.715 kb on - strand, within CSW01_02130at 429.749 kb on + strand, within CSW01_02130at 429.749 kb on + strand, within CSW01_02130at 429.757 kb on - strand, within CSW01_02130at 429.791 kb on - strand, within CSW01_02130at 429.848 kb on - strand, within CSW01_02130at 429.848 kb on - strand, within CSW01_02130at 429.864 kb on - strand, within CSW01_02130at 429.900 kb on - strand, within CSW01_02130at 429.984 kb on - strand, within CSW01_02130at 430.019 kb on + strandat 430.097 kb on + strandat 430.097 kb on + strandat 430.097 kb on + strandat 430.097 kb on + strandat 430.097 kb on + strandat 430.097 kb on + strandat 430.097 kb on + strandat 430.097 kb on + strandat 430.097 kb on + strandat 430.097 kb on + strandat 430.097 kb on + strandat 430.097 kb on + strandat 430.097 kb on + strandat 430.097 kb on + strandat 430.097 kb on + strandat 430.097 kb on + strandat 430.097 kb on + strandat 430.097 kb on + strandat 430.105 kb on - strandat 430.105 kb on - strandat 430.105 kb on - strandat 430.105 kb on - strandat 430.105 kb on - strandat 430.115 kb on - strandat 430.148 kb on - strandat 430.232 kb on + strandat 430.316 kb on + strand, within CSW01_02135at 430.368 kb on - strand, within CSW01_02135at 430.410 kb on + strand, within CSW01_02135at 430.410 kb on + strand, within CSW01_02135at 430.418 kb on - strand, within CSW01_02135at 430.418 kb on - strand, within CSW01_02135at 430.418 kb on - strand, within CSW01_02135at 430.420 kb on + strand, within CSW01_02135at 430.420 kb on + strand, within CSW01_02135at 430.428 kb on - strand, within CSW01_02135at 430.428 kb on - strand, within CSW01_02135at 430.428 kb on - strand, within CSW01_02135at 430.428 kb on - strand, within CSW01_02135at 430.428 kb on - strand, within CSW01_02135at 430.430 kb on - strand, within CSW01_02135at 430.463 kb on + strand, within CSW01_02135at 430.467 kb on + strand, within CSW01_02135at 430.491 kb on + strand, within CSW01_02135at 430.597 kb on + strand, within CSW01_02135at 430.652 kb on - strand, within CSW01_02135at 430.652 kb on - strand, within CSW01_02135at 430.689 kb on - strand, within CSW01_02135at 430.712 kb on + strand, within CSW01_02135at 430.744 kb on - strand, within CSW01_02135at 430.752 kb on - strand, within CSW01_02135at 430.772 kb on - strand, within CSW01_02135at 430.789 kb on - strand, within CSW01_02135at 430.812 kb on + strand, within CSW01_02135at 430.817 kb on + strand, within CSW01_02135at 430.820 kb on - strand, within CSW01_02135at 430.909 kb on - strand, within CSW01_02135at 430.935 kb on - strand, within CSW01_02135at 430.945 kb on - strand, within CSW01_02135at 430.955 kb on - strand, within CSW01_02135at 430.963 kb on - strand, within CSW01_02135at 430.972 kb on + strand, within CSW01_02135at 431.030 kb on - strand, within CSW01_02135at 431.064 kb on + strand, within CSW01_02135at 431.104 kb on - strand, within CSW01_02135at 431.116 kb on - strand, within CSW01_02135at 431.341 kb on - strand, within CSW01_02135at 431.341 kb on - strand, within CSW01_02135at 431.341 kb on - strand, within CSW01_02135at 431.351 kb on + strand, within CSW01_02135at 431.358 kb on + strand, within CSW01_02135at 431.359 kb on - strand, within CSW01_02135at 431.361 kb on - strand, within CSW01_02135at 431.361 kb on - strand, within CSW01_02135at 431.368 kb on - strand, within CSW01_02135at 431.370 kb on + strand, within CSW01_02135at 431.444 kb on - strand, within CSW01_02135at 431.461 kb on + strand, within CSW01_02135at 431.481 kb on + strand, within CSW01_02135at 431.489 kb on - strand, within CSW01_02135at 431.619 kb on + strand, within CSW01_02135at 431.643 kb on + strand, within CSW01_02135at 431.695 kb on + strandat 431.710 kb on + strandat 431.710 kb on + strandat 431.710 kb on + strandat 431.710 kb on + strandat 431.710 kb on + strandat 431.718 kb on - strandat 431.718 kb on - strandat 431.718 kb on - strandat 431.718 kb on - strandat 431.718 kb on - strandat 431.737 kb on + strandat 431.765 kb on + strandat 431.797 kb on + strandat 431.797 kb on + strandat 431.805 kb on - strandat 431.805 kb on - strandat 431.805 kb on - strandat 431.819 kb on - strandat 431.843 kb on + strandat 431.850 kb on - strandat 431.874 kb on + strandat 431.882 kb on - strandat 431.882 kb on - strandat 431.896 kb on + strandat 431.902 kb on + strandat 431.905 kb on - strandat 431.913 kb on + strandat 431.954 kb on - strandat 432.030 kb on + strand, within CSW01_02140at 432.030 kb on - strand, within CSW01_02140at 432.100 kb on - strand, within CSW01_02140at 432.130 kb on + strand, within CSW01_02140at 432.130 kb on + strand, within CSW01_02140at 432.130 kb on + strand, within CSW01_02140at 432.130 kb on + strand, within CSW01_02140at 432.130 kb on + strand, within CSW01_02140at 432.130 kb on + strand, within CSW01_02140at 432.130 kb on + strand, within CSW01_02140at 432.130 kb on + strand, within CSW01_02140at 432.130 kb on + strand, within CSW01_02140at 432.130 kb on + strand, within CSW01_02140at 432.138 kb on - strand, within CSW01_02140at 432.138 kb on - strand, within CSW01_02140at 432.138 kb on - strand, within CSW01_02140at 432.138 kb on - strand, within CSW01_02140at 432.138 kb on - strand, within CSW01_02140at 432.138 kb on - strand, within CSW01_02140at 432.138 kb on - strand, within CSW01_02140at 432.138 kb on - strand, within CSW01_02140at 432.153 kb on + strand, within CSW01_02140at 432.153 kb on + strand, within CSW01_02140at 432.153 kb on + strand, within CSW01_02140at 432.153 kb on + strand, within CSW01_02140at 432.153 kb on + strand, within CSW01_02140at 432.153 kb on + strand, within CSW01_02140at 432.153 kb on + strand, within CSW01_02140at 432.153 kb on + strand, within CSW01_02140at 432.161 kb on - strand, within CSW01_02140at 432.161 kb on - strand, within CSW01_02140at 432.161 kb on - strand, within CSW01_02140at 432.161 kb on - strand, within CSW01_02140at 432.161 kb on - strand, within CSW01_02140at 432.161 kb on - strand, within CSW01_02140at 432.161 kb on - strand, within CSW01_02140at 432.161 kb on - strand, within CSW01_02140at 432.161 kb on - strand, within CSW01_02140at 432.161 kb on - strand, within CSW01_02140at 432.161 kb on - strand, within CSW01_02140at 432.161 kb on - strand, within CSW01_02140at 432.173 kb on - strand, within CSW01_02140at 432.179 kb on + strand, within CSW01_02140at 432.179 kb on + strand, within CSW01_02140at 432.179 kb on + strand, within CSW01_02140at 432.179 kb on + strand, within CSW01_02140at 432.179 kb on + strand, within CSW01_02140at 432.187 kb on - strand, within CSW01_02140at 432.187 kb on - strand, within CSW01_02140at 432.187 kb on - strand, within CSW01_02140at 432.215 kb on - strand, within CSW01_02140at 432.328 kb on + strand, within CSW01_02140at 432.420 kb on + strand, within CSW01_02140at 432.428 kb on - strand, within CSW01_02140at 432.469 kb on + strand, within CSW01_02140at 432.469 kb on + strand, within CSW01_02140at 432.469 kb on + strand, within CSW01_02140at 432.477 kb on - strand, within CSW01_02140at 432.477 kb on - strand, within CSW01_02140at 432.477 kb on - strand, within CSW01_02140at 432.477 kb on - strand, within CSW01_02140at 432.477 kb on - strand, within CSW01_02140at 432.477 kb on - strand, within CSW01_02140at 432.477 kb on - strand, within CSW01_02140at 432.477 kb on - strand, within CSW01_02140at 432.530 kb on - strand, within CSW01_02140at 432.530 kb on - strand, within CSW01_02140at 432.530 kb on - strand, within CSW01_02140at 432.553 kb on + strand, within CSW01_02140at 432.573 kb on + strand, within CSW01_02140at 432.579 kb on + strand, within CSW01_02140at 432.587 kb on - strand, within CSW01_02140at 432.637 kb on + strand, within CSW01_02140

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Per-strain Table

Position Strand Gene LocusTag Fraction ICP3_phage_411_MOI_rep2
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429,118 - CSW01_02130 0.14 +2.7
429,128 + CSW01_02130 0.15 -0.7
429,129 + CSW01_02130 0.15 -3.5
429,155 + CSW01_02130 0.17 -4.5
429,155 + CSW01_02130 0.17 -2.4
429,157 + CSW01_02130 0.17 +0.0
429,165 - CSW01_02130 0.18 -2.2
429,207 + CSW01_02130 0.21 +1.2
429,270 + CSW01_02130 0.27 -1.1
429,351 - CSW01_02130 0.34 -3.4
429,351 - CSW01_02130 0.34 -0.5
429,361 - CSW01_02130 0.35 +0.9
429,407 + CSW01_02130 0.39 -0.0
429,407 + CSW01_02130 0.39 +1.6
429,414 + CSW01_02130 0.39 +0.3
429,415 - CSW01_02130 0.39 -0.9
429,430 + CSW01_02130 0.41 +0.2
429,430 + CSW01_02130 0.41 -0.6
429,430 + CSW01_02130 0.41 +0.5
429,457 - CSW01_02130 0.43 -4.7
429,464 - CSW01_02130 0.43 -0.2
429,478 + CSW01_02130 0.45 +1.6
429,478 + CSW01_02130 0.45 -3.5
429,478 + CSW01_02130 0.45 -2.3
429,478 + CSW01_02130 0.45 +1.9
429,478 + CSW01_02130 0.45 -0.6
429,485 - CSW01_02130 0.45 +0.1
429,486 - CSW01_02130 0.45 -0.2
429,486 - CSW01_02130 0.45 -0.8
429,486 - CSW01_02130 0.45 -3.3
429,486 - CSW01_02130 0.45 +0.4
429,510 - CSW01_02130 0.47 +1.0
429,512 + CSW01_02130 0.48 +0.4
429,520 - CSW01_02130 0.48 -1.2
429,535 - CSW01_02130 0.49 -1.9
429,541 - CSW01_02130 0.50 -1.5
429,556 + CSW01_02130 0.51 -1.5
429,607 + CSW01_02130 0.56 -3.9
429,630 + CSW01_02130 0.58 -0.7
429,630 + CSW01_02130 0.58 +0.1
429,630 + CSW01_02130 0.58 -0.2
429,630 + CSW01_02130 0.58 +1.5
429,630 + CSW01_02130 0.58 +0.4
429,630 + CSW01_02130 0.58 +1.9
429,630 + CSW01_02130 0.58 +0.3
429,638 - CSW01_02130 0.58 -2.0
429,638 - CSW01_02130 0.58 -4.5
429,638 - CSW01_02130 0.58 -0.5
429,699 - CSW01_02130 0.64 -0.3
429,715 - CSW01_02130 0.65 -2.5
429,749 + CSW01_02130 0.68 +1.1
429,749 + CSW01_02130 0.68 -3.6
429,757 - CSW01_02130 0.68 +3.4
429,791 - CSW01_02130 0.71 +1.3
429,848 - CSW01_02130 0.76 +1.5
429,848 - CSW01_02130 0.76 -1.5
429,864 - CSW01_02130 0.78 -3.3
429,900 - CSW01_02130 0.81 -0.3
429,984 - CSW01_02130 0.88 -0.1
430,019 + -1.4
430,097 + -0.1
430,097 + -0.4
430,097 + +1.0
430,097 + -0.2
430,097 + -1.3
430,097 + +0.1
430,097 + +0.5
430,097 + -3.6
430,097 + +1.0
430,097 + +0.2
430,097 + +0.5
430,097 + +1.5
430,097 + -0.4
430,097 + +0.3
430,097 + -1.5
430,097 + +0.2
430,097 + -2.6
430,097 + +0.5
430,105 - +0.2
430,105 - -2.1
430,105 - +0.7
430,105 - -3.5
430,105 - +0.7
430,115 - +0.0
430,148 - -4.1
430,232 + -0.7
430,316 + CSW01_02135 0.12 -1.1
430,368 - CSW01_02135 0.15 -0.1
430,410 + CSW01_02135 0.17 -0.0
430,410 + CSW01_02135 0.17 +1.0
430,418 - CSW01_02135 0.18 +0.3
430,418 - CSW01_02135 0.18 +0.4
430,418 - CSW01_02135 0.18 -0.3
430,420 + CSW01_02135 0.18 +0.5
430,420 + CSW01_02135 0.18 -4.2
430,428 - CSW01_02135 0.18 +1.1
430,428 - CSW01_02135 0.18 +2.0
430,428 - CSW01_02135 0.18 -3.1
430,428 - CSW01_02135 0.18 +0.1
430,428 - CSW01_02135 0.18 -1.6
430,430 - CSW01_02135 0.18 -3.5
430,463 + CSW01_02135 0.20 +0.2
430,467 + CSW01_02135 0.20 -3.5
430,491 + CSW01_02135 0.22 -1.4
430,597 + CSW01_02135 0.28 -1.1
430,652 - CSW01_02135 0.31 -1.1
430,652 - CSW01_02135 0.31 +0.7
430,689 - CSW01_02135 0.33 -0.4
430,712 + CSW01_02135 0.35 +0.1
430,744 - CSW01_02135 0.36 +0.4
430,752 - CSW01_02135 0.37 -0.1
430,772 - CSW01_02135 0.38 +0.4
430,789 - CSW01_02135 0.39 -1.9
430,812 + CSW01_02135 0.40 -0.2
430,817 + CSW01_02135 0.41 -3.4
430,820 - CSW01_02135 0.41 -3.0
430,909 - CSW01_02135 0.46 -2.6
430,935 - CSW01_02135 0.47 -1.0
430,945 - CSW01_02135 0.48 -1.0
430,955 - CSW01_02135 0.49 -5.0
430,963 - CSW01_02135 0.49 -0.1
430,972 + CSW01_02135 0.50 -4.4
431,030 - CSW01_02135 0.53 +1.3
431,064 + CSW01_02135 0.55 -2.9
431,104 - CSW01_02135 0.57 -0.1
431,116 - CSW01_02135 0.58 +0.8
431,341 - CSW01_02135 0.71 -1.0
431,341 - CSW01_02135 0.71 -1.0
431,341 - CSW01_02135 0.71 -2.9
431,351 + CSW01_02135 0.72 +1.7
431,358 + CSW01_02135 0.72 -1.4
431,359 - CSW01_02135 0.72 +0.1
431,361 - CSW01_02135 0.72 -0.2
431,361 - CSW01_02135 0.72 -3.2
431,368 - CSW01_02135 0.73 -0.1
431,370 + CSW01_02135 0.73 -0.4
431,444 - CSW01_02135 0.77 -2.9
431,461 + CSW01_02135 0.78 -0.4
431,481 + CSW01_02135 0.79 +2.1
431,489 - CSW01_02135 0.80 -0.8
431,619 + CSW01_02135 0.87 -2.1
431,643 + CSW01_02135 0.88 -0.8
431,695 + -0.3
431,710 + -1.1
431,710 + -1.8
431,710 + -3.3
431,710 + -1.2
431,710 + +1.1
431,718 - +2.1
431,718 - +0.8
431,718 - -0.3
431,718 - -1.2
431,718 - -1.6
431,737 + -3.1
431,765 + -2.9
431,797 + +2.4
431,797 + +0.5
431,805 - +0.3
431,805 - -3.7
431,805 - -3.5
431,819 - +0.6
431,843 + -1.8
431,850 - +0.5
431,874 + -0.3
431,882 - -1.4
431,882 - -3.3
431,896 + +0.0
431,902 + -1.0
431,905 - -0.6
431,913 + -3.9
431,954 - -2.9
432,030 + CSW01_02140 0.15 +0.3
432,030 - CSW01_02140 0.15 +0.6
432,100 - CSW01_02140 0.20 +0.7
432,130 + CSW01_02140 0.23 -3.2
432,130 + CSW01_02140 0.23 -2.2
432,130 + CSW01_02140 0.23 -1.6
432,130 + CSW01_02140 0.23 -0.8
432,130 + CSW01_02140 0.23 -0.9
432,130 + CSW01_02140 0.23 -0.7
432,130 + CSW01_02140 0.23 -1.5
432,130 + CSW01_02140 0.23 +0.4
432,130 + CSW01_02140 0.23 +0.2
432,130 + CSW01_02140 0.23 -1.8
432,138 - CSW01_02140 0.23 +0.2
432,138 - CSW01_02140 0.23 -1.1
432,138 - CSW01_02140 0.23 -3.4
432,138 - CSW01_02140 0.23 +1.9
432,138 - CSW01_02140 0.23 +0.7
432,138 - CSW01_02140 0.23 -3.0
432,138 - CSW01_02140 0.23 -0.2
432,138 - CSW01_02140 0.23 +0.2
432,153 + CSW01_02140 0.25 -0.2
432,153 + CSW01_02140 0.25 -0.1
432,153 + CSW01_02140 0.25 +0.3
432,153 + CSW01_02140 0.25 +2.1
432,153 + CSW01_02140 0.25 +0.9
432,153 + CSW01_02140 0.25 -0.6
432,153 + CSW01_02140 0.25 -0.3
432,153 + CSW01_02140 0.25 +0.7
432,161 - CSW01_02140 0.25 +0.1
432,161 - CSW01_02140 0.25 -3.5
432,161 - CSW01_02140 0.25 -0.8
432,161 - CSW01_02140 0.25 -0.6
432,161 - CSW01_02140 0.25 -0.8
432,161 - CSW01_02140 0.25 -1.5
432,161 - CSW01_02140 0.25 -1.3
432,161 - CSW01_02140 0.25 +1.2
432,161 - CSW01_02140 0.25 -0.7
432,161 - CSW01_02140 0.25 -3.7
432,161 - CSW01_02140 0.25 -3.4
432,161 - CSW01_02140 0.25 +2.1
432,173 - CSW01_02140 0.26 -3.1
432,179 + CSW01_02140 0.27 +0.3
432,179 + CSW01_02140 0.27 -3.5
432,179 + CSW01_02140 0.27 -3.8
432,179 + CSW01_02140 0.27 +0.6
432,179 + CSW01_02140 0.27 -3.8
432,187 - CSW01_02140 0.27 -4.1
432,187 - CSW01_02140 0.27 -0.2
432,187 - CSW01_02140 0.27 -1.3
432,215 - CSW01_02140 0.30 +1.6
432,328 + CSW01_02140 0.39 -3.1
432,420 + CSW01_02140 0.46 -0.7
432,428 - CSW01_02140 0.47 -0.3
432,469 + CSW01_02140 0.50 -0.5
432,469 + CSW01_02140 0.50 -0.7
432,469 + CSW01_02140 0.50 +0.7
432,477 - CSW01_02140 0.51 -1.4
432,477 - CSW01_02140 0.51 -2.1
432,477 - CSW01_02140 0.51 +0.5
432,477 - CSW01_02140 0.51 -0.8
432,477 - CSW01_02140 0.51 +1.6
432,477 - CSW01_02140 0.51 -1.8
432,477 - CSW01_02140 0.51 -3.1
432,477 - CSW01_02140 0.51 +0.2
432,530 - CSW01_02140 0.55 +0.5
432,530 - CSW01_02140 0.55 -0.1
432,530 - CSW01_02140 0.55 -1.0
432,553 + CSW01_02140 0.57 -0.9
432,573 + CSW01_02140 0.59 -0.8
432,579 + CSW01_02140 0.59 -2.9
432,587 - CSW01_02140 0.60 -0.5
432,637 + CSW01_02140 0.64 +0.9

Or see this region's nucleotide sequence