Experiment: ICP3_phage_411_MOI_rep2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CSW01_01720 and CSW01_01725 are separated by 5 nucleotides CSW01_01725 and CSW01_01730 are separated by 86 nucleotides
CSW01_01720: CSW01_01720 - uroporphyrinogen decarboxylase, at 349,251 to 350,330
_01720
CSW01_01725: CSW01_01725 - TetR family transcriptional regulator, at 350,336 to 351,064
_01725
CSW01_01730: CSW01_01730 - acetyltransferase, at 351,151 to 352,110
_01730
Position (kb) 350
351
352 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3 at 350.384 kb on + strand at 350.384 kb on + strand at 350.384 kb on + strand at 350.392 kb on - strand at 350.477 kb on - strand, within CSW01_01725 at 350.483 kb on + strand, within CSW01_01725 at 350.494 kb on + strand, within CSW01_01725 at 350.506 kb on + strand, within CSW01_01725 at 350.507 kb on - strand, within CSW01_01725 at 350.527 kb on + strand, within CSW01_01725 at 350.596 kb on + strand, within CSW01_01725 at 350.596 kb on + strand, within CSW01_01725 at 350.637 kb on - strand, within CSW01_01725 at 350.649 kb on - strand, within CSW01_01725 at 350.775 kb on + strand, within CSW01_01725 at 350.907 kb on + strand, within CSW01_01725 at 350.946 kb on - strand, within CSW01_01725 at 351.031 kb on + strand at 351.053 kb on + strand at 351.053 kb on + strand at 351.061 kb on - strand at 351.061 kb on - strand at 351.061 kb on - strand at 351.061 kb on - strand at 351.072 kb on - strand at 351.079 kb on - strand at 351.085 kb on + strand at 351.415 kb on + strand, within CSW01_01730 at 351.454 kb on - strand, within CSW01_01730 at 351.523 kb on - strand, within CSW01_01730 at 351.532 kb on + strand, within CSW01_01730 at 351.532 kb on + strand, within CSW01_01730 at 351.540 kb on - strand, within CSW01_01730 at 351.546 kb on + strand, within CSW01_01730 at 351.579 kb on - strand, within CSW01_01730 at 351.598 kb on - strand, within CSW01_01730 at 351.640 kb on - strand, within CSW01_01730 at 351.652 kb on + strand, within CSW01_01730 at 351.713 kb on - strand, within CSW01_01730 at 351.905 kb on - strand, within CSW01_01730 at 351.939 kb on + strand, within CSW01_01730 at 351.939 kb on - strand, within CSW01_01730 at 351.947 kb on - strand, within CSW01_01730 at 351.947 kb on - strand, within CSW01_01730 at 351.947 kb on - strand, within CSW01_01730 at 351.947 kb on - strand, within CSW01_01730 at 351.947 kb on - strand, within CSW01_01730 at 351.947 kb on - strand, within CSW01_01730 at 351.951 kb on + strand, within CSW01_01730 at 351.951 kb on + strand, within CSW01_01730 at 351.959 kb on - strand, within CSW01_01730 at 351.972 kb on - strand, within CSW01_01730 at 351.972 kb on - strand, within CSW01_01730
Per-strain Table
Position Strand Gene LocusTag Fraction ICP3_phage_411_MOI_rep2 remove 350,384 + +0.1 350,384 + +0.8 350,384 + -0.5 350,392 - +1.1 350,477 - CSW01_01725 0.19 +1.5 350,483 + CSW01_01725 0.20 +1.0 350,494 + CSW01_01725 0.22 -2.4 350,506 + CSW01_01725 0.23 +0.2 350,507 - CSW01_01725 0.23 -3.4 350,527 + CSW01_01725 0.26 -3.8 350,596 + CSW01_01725 0.36 -3.0 350,596 + CSW01_01725 0.36 +0.0 350,637 - CSW01_01725 0.41 +2.1 350,649 - CSW01_01725 0.43 -2.8 350,775 + CSW01_01725 0.60 -2.2 350,907 + CSW01_01725 0.78 -3.0 350,946 - CSW01_01725 0.84 -2.1 351,031 + +3.0 351,053 + +0.7 351,053 + -0.8 351,061 - +0.5 351,061 - +0.3 351,061 - +2.6 351,061 - -1.6 351,072 - -4.2 351,079 - -2.7 351,085 + +0.9 351,415 + CSW01_01730 0.28 +0.1 351,454 - CSW01_01730 0.32 -0.2 351,523 - CSW01_01730 0.39 -2.7 351,532 + CSW01_01730 0.40 -2.3 351,532 + CSW01_01730 0.40 -0.9 351,540 - CSW01_01730 0.41 -1.5 351,546 + CSW01_01730 0.41 -3.8 351,579 - CSW01_01730 0.45 -0.6 351,598 - CSW01_01730 0.47 +0.6 351,640 - CSW01_01730 0.51 +0.7 351,652 + CSW01_01730 0.52 +0.5 351,713 - CSW01_01730 0.59 +0.2 351,905 - CSW01_01730 0.79 +0.3 351,939 + CSW01_01730 0.82 -3.6 351,939 - CSW01_01730 0.82 -2.6 351,947 - CSW01_01730 0.83 -3.9 351,947 - CSW01_01730 0.83 +1.0 351,947 - CSW01_01730 0.83 +0.7 351,947 - CSW01_01730 0.83 -2.6 351,947 - CSW01_01730 0.83 -0.3 351,947 - CSW01_01730 0.83 +0.7 351,951 + CSW01_01730 0.83 -0.2 351,951 + CSW01_01730 0.83 -0.8 351,959 - CSW01_01730 0.84 +1.7 351,972 - CSW01_01730 0.86 -1.1 351,972 - CSW01_01730 0.86 -2.2
Or see this region's nucleotide sequence