Strain Fitness in Vibrio cholerae E7946 ATCC 55056 around CSW01_01560

Experiment: ICP3_phage_411_MOI_rep2

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCSW01_01555 and CSW01_01560 are separated by 111 nucleotidesCSW01_01560 and CSW01_01565 are separated by 197 nucleotides CSW01_01555: CSW01_01555 - ATP-dependent RNA helicase RhlB, at 315,084 to 316,400 _01555 CSW01_01560: CSW01_01560 - thioredoxin TrxA, at 316,512 to 316,838 _01560 CSW01_01565: CSW01_01565 - transcription termination factor Rho, at 317,036 to 318,295 _01565 Position (kb) 316 317Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 315.535 kb on + strand, within CSW01_01555at 315.538 kb on + strand, within CSW01_01555at 315.585 kb on + strand, within CSW01_01555at 315.588 kb on - strand, within CSW01_01555at 315.588 kb on - strand, within CSW01_01555at 315.642 kb on - strand, within CSW01_01555at 315.655 kb on + strand, within CSW01_01555at 315.655 kb on + strand, within CSW01_01555at 315.688 kb on + strand, within CSW01_01555at 315.688 kb on + strand, within CSW01_01555at 315.688 kb on + strand, within CSW01_01555at 315.696 kb on - strand, within CSW01_01555at 315.696 kb on - strand, within CSW01_01555at 315.696 kb on - strand, within CSW01_01555at 315.733 kb on + strand, within CSW01_01555at 315.741 kb on - strand, within CSW01_01555at 315.741 kb on - strand, within CSW01_01555at 315.741 kb on - strand, within CSW01_01555at 315.741 kb on - strand, within CSW01_01555at 315.757 kb on + strand, within CSW01_01555at 315.790 kb on + strand, within CSW01_01555at 315.790 kb on + strand, within CSW01_01555at 315.790 kb on + strand, within CSW01_01555at 315.790 kb on + strand, within CSW01_01555at 315.790 kb on + strand, within CSW01_01555at 315.790 kb on + strand, within CSW01_01555at 315.790 kb on + strand, within CSW01_01555at 315.792 kb on + strand, within CSW01_01555at 315.798 kb on - strand, within CSW01_01555at 315.798 kb on - strand, within CSW01_01555at 315.798 kb on - strand, within CSW01_01555at 315.798 kb on - strand, within CSW01_01555at 315.798 kb on - strand, within CSW01_01555at 315.798 kb on - strand, within CSW01_01555at 315.798 kb on - strand, within CSW01_01555at 315.798 kb on - strand, within CSW01_01555at 315.798 kb on - strand, within CSW01_01555at 315.798 kb on - strand, within CSW01_01555at 315.798 kb on - strand, within CSW01_01555at 315.800 kb on + strand, within CSW01_01555at 315.805 kb on + strand, within CSW01_01555at 315.805 kb on + strand, within CSW01_01555at 315.805 kb on + strand, within CSW01_01555at 315.919 kb on + strand, within CSW01_01555at 315.919 kb on + strand, within CSW01_01555at 315.927 kb on - strand, within CSW01_01555at 315.927 kb on - strand, within CSW01_01555at 316.055 kb on - strand, within CSW01_01555at 316.055 kb on - strand, within CSW01_01555at 316.055 kb on - strand, within CSW01_01555at 316.055 kb on - strand, within CSW01_01555at 316.064 kb on + strand, within CSW01_01555at 316.064 kb on + strand, within CSW01_01555at 316.072 kb on - strand, within CSW01_01555at 316.172 kb on - strand, within CSW01_01555at 316.172 kb on - strand, within CSW01_01555at 316.172 kb on - strand, within CSW01_01555at 316.245 kb on - strand, within CSW01_01555at 316.247 kb on + strand, within CSW01_01555at 316.255 kb on - strand, within CSW01_01555at 316.257 kb on + strand, within CSW01_01555at 316.265 kb on - strand, within CSW01_01555at 316.267 kb on - strand, within CSW01_01555at 316.269 kb on + strandat 316.274 kb on + strandat 316.296 kb on + strandat 316.377 kb on - strandat 316.379 kb on - strandat 316.379 kb on - strandat 316.379 kb on - strandat 316.475 kb on + strandat 316.475 kb on + strandat 316.483 kb on - strandat 316.610 kb on - strand, within CSW01_01560at 316.832 kb on + strandat 316.840 kb on - strandat 316.840 kb on - strandat 316.840 kb on - strandat 316.855 kb on + strandat 316.855 kb on + strandat 316.856 kb on - strandat 316.952 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction ICP3_phage_411_MOI_rep2
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315,535 + CSW01_01555 0.34 -3.7
315,538 + CSW01_01555 0.34 +0.4
315,585 + CSW01_01555 0.38 -4.0
315,588 - CSW01_01555 0.38 -2.5
315,588 - CSW01_01555 0.38 -1.0
315,642 - CSW01_01555 0.42 -2.5
315,655 + CSW01_01555 0.43 +0.8
315,655 + CSW01_01555 0.43 -2.4
315,688 + CSW01_01555 0.46 +0.8
315,688 + CSW01_01555 0.46 -4.5
315,688 + CSW01_01555 0.46 -2.2
315,696 - CSW01_01555 0.46 -0.7
315,696 - CSW01_01555 0.46 -0.1
315,696 - CSW01_01555 0.46 -3.2
315,733 + CSW01_01555 0.49 +1.3
315,741 - CSW01_01555 0.50 -2.6
315,741 - CSW01_01555 0.50 -2.7
315,741 - CSW01_01555 0.50 -1.7
315,741 - CSW01_01555 0.50 -0.1
315,757 + CSW01_01555 0.51 -0.4
315,790 + CSW01_01555 0.54 -1.1
315,790 + CSW01_01555 0.54 -0.3
315,790 + CSW01_01555 0.54 -0.3
315,790 + CSW01_01555 0.54 -1.5
315,790 + CSW01_01555 0.54 -3.1
315,790 + CSW01_01555 0.54 +1.9
315,790 + CSW01_01555 0.54 -2.0
315,792 + CSW01_01555 0.54 -0.7
315,798 - CSW01_01555 0.54 -0.7
315,798 - CSW01_01555 0.54 -2.4
315,798 - CSW01_01555 0.54 -1.2
315,798 - CSW01_01555 0.54 -4.0
315,798 - CSW01_01555 0.54 -4.2
315,798 - CSW01_01555 0.54 -2.9
315,798 - CSW01_01555 0.54 +0.4
315,798 - CSW01_01555 0.54 -1.1
315,798 - CSW01_01555 0.54 -0.2
315,798 - CSW01_01555 0.54 -1.0
315,798 - CSW01_01555 0.54 -1.3
315,800 + CSW01_01555 0.54 -1.2
315,805 + CSW01_01555 0.55 -2.1
315,805 + CSW01_01555 0.55 -3.7
315,805 + CSW01_01555 0.55 -2.1
315,919 + CSW01_01555 0.63 -0.8
315,919 + CSW01_01555 0.63 -0.5
315,927 - CSW01_01555 0.64 -1.3
315,927 - CSW01_01555 0.64 -2.6
316,055 - CSW01_01555 0.74 -1.4
316,055 - CSW01_01555 0.74 +0.5
316,055 - CSW01_01555 0.74 -3.7
316,055 - CSW01_01555 0.74 -2.4
316,064 + CSW01_01555 0.74 -1.3
316,064 + CSW01_01555 0.74 -3.2
316,072 - CSW01_01555 0.75 +0.8
316,172 - CSW01_01555 0.83 +1.5
316,172 - CSW01_01555 0.83 +0.7
316,172 - CSW01_01555 0.83 -1.2
316,245 - CSW01_01555 0.88 -3.5
316,247 + CSW01_01555 0.88 -0.2
316,255 - CSW01_01555 0.89 -4.2
316,257 + CSW01_01555 0.89 -3.1
316,265 - CSW01_01555 0.90 +1.9
316,267 - CSW01_01555 0.90 -2.6
316,269 + -2.0
316,274 + -0.4
316,296 + -1.0
316,377 - -3.1
316,379 - +0.5
316,379 - -2.8
316,379 - -1.6
316,475 + -0.3
316,475 + +1.6
316,483 - +1.5
316,610 - CSW01_01560 0.30 +0.6
316,832 + +0.6
316,840 - -0.7
316,840 - -1.1
316,840 - -0.6
316,855 + -0.4
316,855 + -0.2
316,856 - +1.0
316,952 + +1.2

Or see this region's nucleotide sequence