Strain Fitness in Vibrio cholerae E7946 ATCC 55056 around CSW01_01075

Experiment: ICP3_phage_411_MOI_rep2

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCSW01_01065 and CSW01_01070 are separated by 130 nucleotidesCSW01_01070 and CSW01_01075 overlap by 10 nucleotidesCSW01_01075 and CSW01_01080 overlap by 4 nucleotides CSW01_01065: CSW01_01065 - TonB-dependent siderophore receptor, at 206,434 to 208,590 _01065 CSW01_01070: CSW01_01070 - ABC transporter ATP-binding protein, at 208,721 to 209,506 _01070 CSW01_01075: CSW01_01075 - iron(III) ABC transporter substrate-binding protein, at 209,497 to 210,456 _01075 CSW01_01080: CSW01_01080 - Fe(3+)-hydroxamate ABC transporter permease FhuB, at 210,453 to 212,414 _01080 Position (kb) 209 210 211Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3at 208.557 kb on - strandat 208.561 kb on + strandat 208.566 kb on + strandat 208.567 kb on - strandat 208.567 kb on - strandat 208.569 kb on - strandat 208.571 kb on + strandat 208.571 kb on + strandat 208.571 kb on + strandat 208.571 kb on + strandat 208.571 kb on + strandat 208.571 kb on + strandat 208.571 kb on + strandat 208.574 kb on - strandat 208.579 kb on - strandat 208.608 kb on - strandat 208.608 kb on - strandat 208.631 kb on + strandat 208.797 kb on + strandat 208.798 kb on - strandat 208.804 kb on + strand, within CSW01_01070at 208.852 kb on - strand, within CSW01_01070at 208.862 kb on - strand, within CSW01_01070at 208.946 kb on + strand, within CSW01_01070at 208.985 kb on + strand, within CSW01_01070at 208.985 kb on + strand, within CSW01_01070at 208.992 kb on - strand, within CSW01_01070at 208.994 kb on - strand, within CSW01_01070at 209.037 kb on + strand, within CSW01_01070at 209.044 kb on - strand, within CSW01_01070at 209.136 kb on + strand, within CSW01_01070at 209.279 kb on - strand, within CSW01_01070at 209.311 kb on + strand, within CSW01_01070at 209.321 kb on + strand, within CSW01_01070at 209.326 kb on + strand, within CSW01_01070at 209.334 kb on - strand, within CSW01_01070at 209.334 kb on - strand, within CSW01_01070at 209.334 kb on - strand, within CSW01_01070at 209.349 kb on + strand, within CSW01_01070at 209.349 kb on - strand, within CSW01_01070at 209.358 kb on - strand, within CSW01_01070at 209.428 kb on - strandat 209.428 kb on - strandat 209.485 kb on + strandat 209.600 kb on - strand, within CSW01_01075at 209.600 kb on - strand, within CSW01_01075at 209.639 kb on + strand, within CSW01_01075at 209.639 kb on + strand, within CSW01_01075at 209.650 kb on + strand, within CSW01_01075at 209.658 kb on - strand, within CSW01_01075at 209.668 kb on - strand, within CSW01_01075at 209.668 kb on - strand, within CSW01_01075at 209.673 kb on + strand, within CSW01_01075at 209.673 kb on + strand, within CSW01_01075at 209.673 kb on + strand, within CSW01_01075at 209.681 kb on - strand, within CSW01_01075at 209.681 kb on - strand, within CSW01_01075at 209.681 kb on - strand, within CSW01_01075at 209.683 kb on - strand, within CSW01_01075at 209.685 kb on + strand, within CSW01_01075at 209.704 kb on - strand, within CSW01_01075at 209.704 kb on - strand, within CSW01_01075at 209.753 kb on + strand, within CSW01_01075at 209.753 kb on + strand, within CSW01_01075at 209.753 kb on + strand, within CSW01_01075at 209.753 kb on + strand, within CSW01_01075at 209.753 kb on + strand, within CSW01_01075at 209.753 kb on + strand, within CSW01_01075at 209.758 kb on + strand, within CSW01_01075at 209.758 kb on + strand, within CSW01_01075at 209.772 kb on + strand, within CSW01_01075at 209.782 kb on + strand, within CSW01_01075at 209.806 kb on - strand, within CSW01_01075at 209.806 kb on - strand, within CSW01_01075at 209.884 kb on + strand, within CSW01_01075at 209.885 kb on + strand, within CSW01_01075at 209.885 kb on + strand, within CSW01_01075at 209.885 kb on + strand, within CSW01_01075at 209.885 kb on + strand, within CSW01_01075at 209.885 kb on + strand, within CSW01_01075at 209.885 kb on + strand, within CSW01_01075at 209.885 kb on + strand, within CSW01_01075at 209.885 kb on + strand, within CSW01_01075at 209.893 kb on - strand, within CSW01_01075at 209.893 kb on - strand, within CSW01_01075at 209.893 kb on - strand, within CSW01_01075at 209.893 kb on - strand, within CSW01_01075at 209.893 kb on - strand, within CSW01_01075at 209.893 kb on - strand, within CSW01_01075at 209.893 kb on - strand, within CSW01_01075at 209.893 kb on - strand, within CSW01_01075at 209.934 kb on + strand, within CSW01_01075at 209.934 kb on + strand, within CSW01_01075at 209.942 kb on - strand, within CSW01_01075at 209.942 kb on - strand, within CSW01_01075at 209.942 kb on - strand, within CSW01_01075at 209.944 kb on + strand, within CSW01_01075at 209.964 kb on + strand, within CSW01_01075at 209.972 kb on - strand, within CSW01_01075at 210.045 kb on + strand, within CSW01_01075at 210.053 kb on - strand, within CSW01_01075at 210.053 kb on - strand, within CSW01_01075at 210.053 kb on - strand, within CSW01_01075at 210.053 kb on - strand, within CSW01_01075at 210.055 kb on + strand, within CSW01_01075at 210.078 kb on + strand, within CSW01_01075at 210.078 kb on + strand, within CSW01_01075at 210.078 kb on + strand, within CSW01_01075at 210.086 kb on - strand, within CSW01_01075at 210.086 kb on - strand, within CSW01_01075at 210.086 kb on - strand, within CSW01_01075at 210.124 kb on + strand, within CSW01_01075at 210.132 kb on - strand, within CSW01_01075at 210.132 kb on - strand, within CSW01_01075at 210.161 kb on + strand, within CSW01_01075at 210.161 kb on + strand, within CSW01_01075at 210.162 kb on + strand, within CSW01_01075at 210.169 kb on - strand, within CSW01_01075at 210.169 kb on - strand, within CSW01_01075at 210.171 kb on + strand, within CSW01_01075at 210.195 kb on - strand, within CSW01_01075at 210.218 kb on - strand, within CSW01_01075at 210.218 kb on - strand, within CSW01_01075at 210.220 kb on + strand, within CSW01_01075at 210.248 kb on + strand, within CSW01_01075at 210.260 kb on + strand, within CSW01_01075at 210.321 kb on - strand, within CSW01_01075at 210.342 kb on + strand, within CSW01_01075at 210.351 kb on + strand, within CSW01_01075at 210.370 kb on + strandat 210.370 kb on + strandat 210.370 kb on + strandat 210.370 kb on + strandat 210.378 kb on - strandat 210.384 kb on - strandat 210.399 kb on + strandat 210.455 kb on - strandat 210.498 kb on - strandat 210.529 kb on + strandat 210.529 kb on + strandat 210.537 kb on - strandat 210.537 kb on - strandat 210.537 kb on - strandat 210.576 kb on + strandat 210.593 kb on + strandat 210.612 kb on + strandat 210.612 kb on + strandat 210.612 kb on + strandat 210.612 kb on + strandat 210.612 kb on + strandat 210.612 kb on + strandat 210.612 kb on + strandat 210.612 kb on + strandat 210.620 kb on - strandat 210.620 kb on - strandat 210.620 kb on - strandat 210.620 kb on - strandat 210.620 kb on - strandat 210.620 kb on - strandat 210.620 kb on - strandat 210.620 kb on - strandat 210.620 kb on - strandat 210.620 kb on - strandat 210.620 kb on - strandat 210.627 kb on - strandat 210.630 kb on - strandat 210.649 kb on - strandat 210.651 kb on + strand, within CSW01_01080at 210.687 kb on + strand, within CSW01_01080at 210.687 kb on + strand, within CSW01_01080at 210.703 kb on + strand, within CSW01_01080at 210.708 kb on + strand, within CSW01_01080at 210.809 kb on + strand, within CSW01_01080at 210.809 kb on + strand, within CSW01_01080at 210.817 kb on - strand, within CSW01_01080at 210.817 kb on - strand, within CSW01_01080at 210.826 kb on + strand, within CSW01_01080at 210.834 kb on - strand, within CSW01_01080at 210.893 kb on - strand, within CSW01_01080at 210.905 kb on - strand, within CSW01_01080at 210.905 kb on - strand, within CSW01_01080at 210.937 kb on - strand, within CSW01_01080at 210.939 kb on - strand, within CSW01_01080at 210.939 kb on - strand, within CSW01_01080at 210.962 kb on + strand, within CSW01_01080at 210.966 kb on + strand, within CSW01_01080at 211.003 kb on + strand, within CSW01_01080at 211.038 kb on + strand, within CSW01_01080at 211.046 kb on - strand, within CSW01_01080at 211.046 kb on - strand, within CSW01_01080at 211.103 kb on - strand, within CSW01_01080at 211.172 kb on + strand, within CSW01_01080at 211.179 kb on + strand, within CSW01_01080at 211.179 kb on + strand, within CSW01_01080at 211.187 kb on - strand, within CSW01_01080at 211.197 kb on - strand, within CSW01_01080at 211.200 kb on - strand, within CSW01_01080at 211.245 kb on - strand, within CSW01_01080at 211.271 kb on + strand, within CSW01_01080at 211.274 kb on + strand, within CSW01_01080at 211.274 kb on + strand, within CSW01_01080at 211.279 kb on + strand, within CSW01_01080at 211.282 kb on - strand, within CSW01_01080at 211.287 kb on - strand, within CSW01_01080at 211.289 kb on + strand, within CSW01_01080at 211.297 kb on + strand, within CSW01_01080at 211.327 kb on + strand, within CSW01_01080at 211.327 kb on + strand, within CSW01_01080at 211.332 kb on + strand, within CSW01_01080at 211.335 kb on - strand, within CSW01_01080at 211.364 kb on - strand, within CSW01_01080at 211.398 kb on + strand, within CSW01_01080at 211.403 kb on + strand, within CSW01_01080at 211.408 kb on + strand, within CSW01_01080at 211.411 kb on - strand, within CSW01_01080at 211.416 kb on - strand, within CSW01_01080at 211.447 kb on + strand, within CSW01_01080

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Per-strain Table

Position Strand Gene LocusTag Fraction ICP3_phage_411_MOI_rep2
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208,557 - +1.3
208,561 + +1.7
208,566 + +3.2
208,567 - +1.2
208,567 - -1.0
208,569 - -0.6
208,571 + +1.1
208,571 + -0.9
208,571 + +1.0
208,571 + +0.8
208,571 + +0.6
208,571 + +0.5
208,571 + +0.2
208,574 - +0.8
208,579 - -2.4
208,608 - -1.2
208,608 - +1.3
208,631 + +0.4
208,797 + -1.7
208,798 - +1.3
208,804 + CSW01_01070 0.11 +0.7
208,852 - CSW01_01070 0.17 +1.2
208,862 - CSW01_01070 0.18 -0.6
208,946 + CSW01_01070 0.29 -3.1
208,985 + CSW01_01070 0.34 +1.3
208,985 + CSW01_01070 0.34 -3.2
208,992 - CSW01_01070 0.34 -3.7
208,994 - CSW01_01070 0.35 +0.2
209,037 + CSW01_01070 0.40 +0.3
209,044 - CSW01_01070 0.41 +1.1
209,136 + CSW01_01070 0.53 +0.5
209,279 - CSW01_01070 0.71 -0.9
209,311 + CSW01_01070 0.75 -0.6
209,321 + CSW01_01070 0.76 -0.7
209,326 + CSW01_01070 0.77 -0.6
209,334 - CSW01_01070 0.78 -1.6
209,334 - CSW01_01070 0.78 -1.5
209,334 - CSW01_01070 0.78 +1.0
209,349 + CSW01_01070 0.80 -3.7
209,349 - CSW01_01070 0.80 +1.6
209,358 - CSW01_01070 0.81 -1.9
209,428 - +0.0
209,428 - -1.3
209,485 + -3.0
209,600 - CSW01_01075 0.11 -0.6
209,600 - CSW01_01075 0.11 +0.0
209,639 + CSW01_01075 0.15 +0.9
209,639 + CSW01_01075 0.15 +0.9
209,650 + CSW01_01075 0.16 +0.6
209,658 - CSW01_01075 0.17 +0.5
209,668 - CSW01_01075 0.18 +0.0
209,668 - CSW01_01075 0.18 +0.0
209,673 + CSW01_01075 0.18 -2.8
209,673 + CSW01_01075 0.18 -1.2
209,673 + CSW01_01075 0.18 -1.3
209,681 - CSW01_01075 0.19 -0.5
209,681 - CSW01_01075 0.19 +0.5
209,681 - CSW01_01075 0.19 +1.4
209,683 - CSW01_01075 0.19 +0.9
209,685 + CSW01_01075 0.20 -2.6
209,704 - CSW01_01075 0.22 +1.3
209,704 - CSW01_01075 0.22 +0.7
209,753 + CSW01_01075 0.27 +0.3
209,753 + CSW01_01075 0.27 +0.4
209,753 + CSW01_01075 0.27 -0.6
209,753 + CSW01_01075 0.27 -0.2
209,753 + CSW01_01075 0.27 +0.7
209,753 + CSW01_01075 0.27 -0.2
209,758 + CSW01_01075 0.27 -1.6
209,758 + CSW01_01075 0.27 +0.0
209,772 + CSW01_01075 0.29 +0.1
209,782 + CSW01_01075 0.30 -0.1
209,806 - CSW01_01075 0.32 -0.7
209,806 - CSW01_01075 0.32 +0.8
209,884 + CSW01_01075 0.40 -0.4
209,885 + CSW01_01075 0.40 -3.4
209,885 + CSW01_01075 0.40 -2.4
209,885 + CSW01_01075 0.40 +0.9
209,885 + CSW01_01075 0.40 -1.1
209,885 + CSW01_01075 0.40 +1.9
209,885 + CSW01_01075 0.40 -0.1
209,885 + CSW01_01075 0.40 +1.5
209,885 + CSW01_01075 0.40 -3.3
209,893 - CSW01_01075 0.41 -0.8
209,893 - CSW01_01075 0.41 +1.9
209,893 - CSW01_01075 0.41 -0.6
209,893 - CSW01_01075 0.41 -1.0
209,893 - CSW01_01075 0.41 +0.5
209,893 - CSW01_01075 0.41 -3.0
209,893 - CSW01_01075 0.41 -0.9
209,893 - CSW01_01075 0.41 -1.9
209,934 + CSW01_01075 0.46 -0.6
209,934 + CSW01_01075 0.46 -0.4
209,942 - CSW01_01075 0.46 +1.3
209,942 - CSW01_01075 0.46 -1.0
209,942 - CSW01_01075 0.46 +1.0
209,944 + CSW01_01075 0.47 +0.7
209,964 + CSW01_01075 0.49 -1.4
209,972 - CSW01_01075 0.49 +0.3
210,045 + CSW01_01075 0.57 -1.8
210,053 - CSW01_01075 0.58 -1.6
210,053 - CSW01_01075 0.58 +1.6
210,053 - CSW01_01075 0.58 -0.4
210,053 - CSW01_01075 0.58 +0.6
210,055 + CSW01_01075 0.58 +2.5
210,078 + CSW01_01075 0.61 +2.4
210,078 + CSW01_01075 0.61 +0.5
210,078 + CSW01_01075 0.61 +1.7
210,086 - CSW01_01075 0.61 -1.7
210,086 - CSW01_01075 0.61 -0.3
210,086 - CSW01_01075 0.61 -2.2
210,124 + CSW01_01075 0.65 -3.3
210,132 - CSW01_01075 0.66 +0.8
210,132 - CSW01_01075 0.66 -0.3
210,161 + CSW01_01075 0.69 -3.1
210,161 + CSW01_01075 0.69 -4.6
210,162 + CSW01_01075 0.69 -1.7
210,169 - CSW01_01075 0.70 -2.8
210,169 - CSW01_01075 0.70 +0.6
210,171 + CSW01_01075 0.70 -0.2
210,195 - CSW01_01075 0.73 +1.5
210,218 - CSW01_01075 0.75 +0.8
210,218 - CSW01_01075 0.75 -2.6
210,220 + CSW01_01075 0.75 -0.8
210,248 + CSW01_01075 0.78 +0.9
210,260 + CSW01_01075 0.79 -0.9
210,321 - CSW01_01075 0.86 -3.5
210,342 + CSW01_01075 0.88 +0.1
210,351 + CSW01_01075 0.89 +0.6
210,370 + +0.6
210,370 + +0.5
210,370 + +1.1
210,370 + -0.9
210,378 - -2.8
210,384 - +0.5
210,399 + +0.4
210,455 - -1.2
210,498 - -1.4
210,529 + -2.6
210,529 + -1.0
210,537 - -0.0
210,537 - +0.1
210,537 - -4.1
210,576 + -0.6
210,593 + -1.3
210,612 + +1.9
210,612 + +0.6
210,612 + -0.5
210,612 + +1.6
210,612 + -1.9
210,612 + +1.0
210,612 + +0.8
210,612 + +0.3
210,620 - +1.3
210,620 - +0.2
210,620 - -0.5
210,620 - +0.7
210,620 - -2.6
210,620 - +0.7
210,620 - +0.7
210,620 - -2.8
210,620 - +0.7
210,620 - -0.6
210,620 - -0.9
210,627 - +0.7
210,630 - +1.2
210,649 - +1.5
210,651 + CSW01_01080 0.10 +0.5
210,687 + CSW01_01080 0.12 +0.3
210,687 + CSW01_01080 0.12 -2.9
210,703 + CSW01_01080 0.13 -2.0
210,708 + CSW01_01080 0.13 -0.4
210,809 + CSW01_01080 0.18 +1.0
210,809 + CSW01_01080 0.18 -3.4
210,817 - CSW01_01080 0.19 +0.9
210,817 - CSW01_01080 0.19 +1.7
210,826 + CSW01_01080 0.19 +1.0
210,834 - CSW01_01080 0.19 +2.2
210,893 - CSW01_01080 0.22 -0.5
210,905 - CSW01_01080 0.23 +1.1
210,905 - CSW01_01080 0.23 -3.8
210,937 - CSW01_01080 0.25 +0.8
210,939 - CSW01_01080 0.25 -3.9
210,939 - CSW01_01080 0.25 +0.1
210,962 + CSW01_01080 0.26 +0.6
210,966 + CSW01_01080 0.26 +1.2
211,003 + CSW01_01080 0.28 -3.8
211,038 + CSW01_01080 0.30 -0.7
211,046 - CSW01_01080 0.30 -0.6
211,046 - CSW01_01080 0.30 -3.6
211,103 - CSW01_01080 0.33 -2.4
211,172 + CSW01_01080 0.37 +0.9
211,179 + CSW01_01080 0.37 -0.2
211,179 + CSW01_01080 0.37 +0.8
211,187 - CSW01_01080 0.37 -0.6
211,197 - CSW01_01080 0.38 -1.4
211,200 - CSW01_01080 0.38 +0.8
211,245 - CSW01_01080 0.40 +0.5
211,271 + CSW01_01080 0.42 +0.5
211,274 + CSW01_01080 0.42 +1.1
211,274 + CSW01_01080 0.42 +0.9
211,279 + CSW01_01080 0.42 -2.0
211,282 - CSW01_01080 0.42 -3.4
211,287 - CSW01_01080 0.43 +0.2
211,289 + CSW01_01080 0.43 +0.3
211,297 + CSW01_01080 0.43 +0.2
211,327 + CSW01_01080 0.45 +1.0
211,327 + CSW01_01080 0.45 -3.3
211,332 + CSW01_01080 0.45 -1.4
211,335 - CSW01_01080 0.45 -1.0
211,364 - CSW01_01080 0.46 +0.2
211,398 + CSW01_01080 0.48 -2.5
211,403 + CSW01_01080 0.48 -4.1
211,408 + CSW01_01080 0.49 -2.5
211,411 - CSW01_01080 0.49 -1.2
211,416 - CSW01_01080 0.49 +1.0
211,447 + CSW01_01080 0.51 -0.7

Or see this region's nucleotide sequence