Strain Fitness in Vibrio cholerae E7946 ATCC 55056 around CSW01_01055

Experiment: ICP3_phage_411_MOI_rep2

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCSW01_01045 and CSW01_01050 overlap by 8 nucleotidesCSW01_01050 and CSW01_01055 are separated by 155 nucleotidesCSW01_01055 and CSW01_01060 are separated by 35 nucleotides CSW01_01045: CSW01_01045 - DNA helicase RecQ, at 201,831 to 203,666 _01045 CSW01_01050: CSW01_01050 - DUF3630 domain-containing protein, at 203,659 to 203,958 _01050 CSW01_01055: CSW01_01055 - hypothetical protein, at 204,114 to 204,491 _01055 CSW01_01060: CSW01_01060 - ABC transporter ATP-binding protein, at 204,527 to 206,362 _01060 Position (kb) 204 205Strain fitness (log2 ratio) -5 -4 -3 -2 -1 0 1 2 3 4at 203.145 kb on + strand, within CSW01_01045at 203.159 kb on - strand, within CSW01_01045at 203.161 kb on - strand, within CSW01_01045at 203.209 kb on + strand, within CSW01_01045at 203.285 kb on - strand, within CSW01_01045at 203.285 kb on - strand, within CSW01_01045at 203.308 kb on - strand, within CSW01_01045at 203.345 kb on - strand, within CSW01_01045at 203.379 kb on + strand, within CSW01_01045at 203.459 kb on + strand, within CSW01_01045at 203.476 kb on - strand, within CSW01_01045at 203.493 kb on + strandat 203.534 kb on - strandat 203.558 kb on - strandat 203.582 kb on + strandat 203.587 kb on + strandat 203.587 kb on + strandat 203.587 kb on + strandat 203.587 kb on + strandat 203.587 kb on + strandat 203.587 kb on + strandat 203.587 kb on + strandat 203.587 kb on + strandat 203.590 kb on - strandat 203.595 kb on - strandat 203.595 kb on - strandat 203.595 kb on - strandat 203.595 kb on - strandat 203.595 kb on - strandat 203.667 kb on + strandat 203.758 kb on + strand, within CSW01_01050at 203.804 kb on + strand, within CSW01_01050at 203.809 kb on + strand, within CSW01_01050at 203.809 kb on + strand, within CSW01_01050at 203.809 kb on + strand, within CSW01_01050at 203.817 kb on - strand, within CSW01_01050at 203.817 kb on - strand, within CSW01_01050at 203.817 kb on - strand, within CSW01_01050at 203.817 kb on - strand, within CSW01_01050at 203.817 kb on - strand, within CSW01_01050at 203.817 kb on - strand, within CSW01_01050at 203.819 kb on - strand, within CSW01_01050at 203.819 kb on - strand, within CSW01_01050at 203.894 kb on + strand, within CSW01_01050at 203.900 kb on + strand, within CSW01_01050at 203.900 kb on + strand, within CSW01_01050at 203.905 kb on + strand, within CSW01_01050at 203.905 kb on + strand, within CSW01_01050at 203.905 kb on + strand, within CSW01_01050at 203.905 kb on + strand, within CSW01_01050at 203.905 kb on + strand, within CSW01_01050at 203.913 kb on - strand, within CSW01_01050at 203.913 kb on - strand, within CSW01_01050at 203.952 kb on + strandat 203.973 kb on + strandat 203.976 kb on - strandat 203.976 kb on - strandat 204.001 kb on - strandat 204.033 kb on + strandat 204.041 kb on + strandat 204.041 kb on - strandat 204.041 kb on - strandat 204.081 kb on + strandat 204.087 kb on - strandat 204.104 kb on + strandat 204.132 kb on + strandat 204.216 kb on + strand, within CSW01_01055at 204.228 kb on + strand, within CSW01_01055at 204.233 kb on + strand, within CSW01_01055at 204.279 kb on + strand, within CSW01_01055at 204.279 kb on + strand, within CSW01_01055at 204.279 kb on + strand, within CSW01_01055at 204.279 kb on + strand, within CSW01_01055at 204.298 kb on - strand, within CSW01_01055at 204.316 kb on + strand, within CSW01_01055at 204.316 kb on + strand, within CSW01_01055at 204.316 kb on + strand, within CSW01_01055at 204.316 kb on + strand, within CSW01_01055at 204.316 kb on + strand, within CSW01_01055at 204.316 kb on + strand, within CSW01_01055at 204.316 kb on + strand, within CSW01_01055at 204.316 kb on + strand, within CSW01_01055at 204.316 kb on + strand, within CSW01_01055at 204.316 kb on + strand, within CSW01_01055at 204.316 kb on + strand, within CSW01_01055at 204.316 kb on + strand, within CSW01_01055at 204.324 kb on - strand, within CSW01_01055at 204.324 kb on - strand, within CSW01_01055at 204.324 kb on - strand, within CSW01_01055at 204.324 kb on - strand, within CSW01_01055at 204.324 kb on - strand, within CSW01_01055at 204.324 kb on - strand, within CSW01_01055at 204.324 kb on - strand, within CSW01_01055at 204.324 kb on - strand, within CSW01_01055at 204.324 kb on - strand, within CSW01_01055at 204.324 kb on - strand, within CSW01_01055at 204.324 kb on - strand, within CSW01_01055at 204.326 kb on + strand, within CSW01_01055at 204.326 kb on + strand, within CSW01_01055at 204.326 kb on + strand, within CSW01_01055at 204.326 kb on + strand, within CSW01_01055at 204.334 kb on - strand, within CSW01_01055at 204.360 kb on + strand, within CSW01_01055at 204.360 kb on + strand, within CSW01_01055at 204.368 kb on - strand, within CSW01_01055at 204.368 kb on - strand, within CSW01_01055at 204.381 kb on + strand, within CSW01_01055at 204.447 kb on - strand, within CSW01_01055at 204.463 kb on - strandat 204.472 kb on + strandat 204.507 kb on + strandat 204.515 kb on - strandat 204.515 kb on - strandat 204.515 kb on - strandat 204.515 kb on - strandat 204.515 kb on - strandat 204.559 kb on - strandat 204.561 kb on + strandat 204.569 kb on - strandat 204.599 kb on + strandat 204.599 kb on + strandat 204.599 kb on + strandat 204.599 kb on + strandat 204.599 kb on + strandat 204.607 kb on - strandat 204.748 kb on + strand, within CSW01_01060at 204.778 kb on - strand, within CSW01_01060at 204.788 kb on - strand, within CSW01_01060at 204.790 kb on - strand, within CSW01_01060at 204.827 kb on + strand, within CSW01_01060at 204.827 kb on + strand, within CSW01_01060at 204.827 kb on + strand, within CSW01_01060at 204.828 kb on - strand, within CSW01_01060at 204.835 kb on - strand, within CSW01_01060at 204.850 kb on + strand, within CSW01_01060at 204.850 kb on + strand, within CSW01_01060at 204.850 kb on + strand, within CSW01_01060at 204.850 kb on + strand, within CSW01_01060at 204.850 kb on + strand, within CSW01_01060at 204.858 kb on - strand, within CSW01_01060at 204.858 kb on - strand, within CSW01_01060at 204.858 kb on - strand, within CSW01_01060at 204.877 kb on + strand, within CSW01_01060at 204.878 kb on + strand, within CSW01_01060at 204.878 kb on + strand, within CSW01_01060at 204.878 kb on + strand, within CSW01_01060at 204.886 kb on - strand, within CSW01_01060at 204.886 kb on - strand, within CSW01_01060at 204.886 kb on - strand, within CSW01_01060at 204.893 kb on + strand, within CSW01_01060at 204.901 kb on - strand, within CSW01_01060at 204.935 kb on + strand, within CSW01_01060at 204.980 kb on - strand, within CSW01_01060at 204.980 kb on - strand, within CSW01_01060at 205.008 kb on + strand, within CSW01_01060at 205.021 kb on - strand, within CSW01_01060at 205.063 kb on + strand, within CSW01_01060at 205.078 kb on + strand, within CSW01_01060at 205.093 kb on - strand, within CSW01_01060at 205.098 kb on + strand, within CSW01_01060at 205.106 kb on - strand, within CSW01_01060at 205.112 kb on + strand, within CSW01_01060at 205.140 kb on + strand, within CSW01_01060at 205.165 kb on + strand, within CSW01_01060at 205.165 kb on + strand, within CSW01_01060at 205.165 kb on + strand, within CSW01_01060at 205.254 kb on + strand, within CSW01_01060at 205.269 kb on + strand, within CSW01_01060at 205.277 kb on - strand, within CSW01_01060at 205.277 kb on - strand, within CSW01_01060at 205.351 kb on - strand, within CSW01_01060at 205.352 kb on - strand, within CSW01_01060at 205.355 kb on + strand, within CSW01_01060at 205.373 kb on - strand, within CSW01_01060at 205.382 kb on - strand, within CSW01_01060at 205.467 kb on - strand, within CSW01_01060at 205.482 kb on + strand, within CSW01_01060

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Per-strain Table

Position Strand Gene LocusTag Fraction ICP3_phage_411_MOI_rep2
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203,145 + CSW01_01045 0.72 -1.9
203,159 - CSW01_01045 0.72 -3.1
203,161 - CSW01_01045 0.72 -3.5
203,209 + CSW01_01045 0.75 +1.4
203,285 - CSW01_01045 0.79 +0.8
203,285 - CSW01_01045 0.79 -3.2
203,308 - CSW01_01045 0.80 -0.5
203,345 - CSW01_01045 0.82 -1.7
203,379 + CSW01_01045 0.84 +0.4
203,459 + CSW01_01045 0.89 -3.8
203,476 - CSW01_01045 0.90 -0.2
203,493 + +1.0
203,534 - +0.8
203,558 - -2.1
203,582 + +1.2
203,587 + -2.1
203,587 + -5.1
203,587 + +0.7
203,587 + -0.5
203,587 + -0.1
203,587 + -1.5
203,587 + +1.2
203,587 + +0.3
203,590 - +1.1
203,595 - -2.5
203,595 - -5.0
203,595 - -0.3
203,595 - +0.6
203,595 - -0.2
203,667 + +1.0
203,758 + CSW01_01050 0.33 +1.0
203,804 + CSW01_01050 0.48 -1.1
203,809 + CSW01_01050 0.50 +0.6
203,809 + CSW01_01050 0.50 +0.1
203,809 + CSW01_01050 0.50 -3.0
203,817 - CSW01_01050 0.53 +1.0
203,817 - CSW01_01050 0.53 +0.7
203,817 - CSW01_01050 0.53 -0.5
203,817 - CSW01_01050 0.53 -3.5
203,817 - CSW01_01050 0.53 +0.3
203,817 - CSW01_01050 0.53 -1.5
203,819 - CSW01_01050 0.53 +0.6
203,819 - CSW01_01050 0.53 +1.9
203,894 + CSW01_01050 0.78 -1.6
203,900 + CSW01_01050 0.80 +0.9
203,900 + CSW01_01050 0.80 -2.3
203,905 + CSW01_01050 0.82 -4.5
203,905 + CSW01_01050 0.82 -0.9
203,905 + CSW01_01050 0.82 +1.5
203,905 + CSW01_01050 0.82 +0.1
203,905 + CSW01_01050 0.82 -4.1
203,913 - CSW01_01050 0.85 +0.5
203,913 - CSW01_01050 0.85 +0.4
203,952 + -2.1
203,973 + +1.1
203,976 - +0.6
203,976 - -3.4
204,001 - -3.7
204,033 + -0.1
204,041 + +0.6
204,041 - -2.9
204,041 - +0.6
204,081 + -1.6
204,087 - +0.1
204,104 + -0.4
204,132 + -0.4
204,216 + CSW01_01055 0.27 -0.6
204,228 + CSW01_01055 0.30 +0.8
204,233 + CSW01_01055 0.31 -3.8
204,279 + CSW01_01055 0.44 -0.0
204,279 + CSW01_01055 0.44 +1.0
204,279 + CSW01_01055 0.44 -1.7
204,279 + CSW01_01055 0.44 -2.6
204,298 - CSW01_01055 0.49 -1.0
204,316 + CSW01_01055 0.53 -0.8
204,316 + CSW01_01055 0.53 -5.2
204,316 + CSW01_01055 0.53 +0.0
204,316 + CSW01_01055 0.53 +2.0
204,316 + CSW01_01055 0.53 -2.5
204,316 + CSW01_01055 0.53 +0.8
204,316 + CSW01_01055 0.53 -0.4
204,316 + CSW01_01055 0.53 +0.4
204,316 + CSW01_01055 0.53 -0.1
204,316 + CSW01_01055 0.53 -2.7
204,316 + CSW01_01055 0.53 -0.9
204,316 + CSW01_01055 0.53 -0.3
204,324 - CSW01_01055 0.56 -2.0
204,324 - CSW01_01055 0.56 -2.0
204,324 - CSW01_01055 0.56 -0.9
204,324 - CSW01_01055 0.56 -1.3
204,324 - CSW01_01055 0.56 -0.6
204,324 - CSW01_01055 0.56 +0.9
204,324 - CSW01_01055 0.56 -1.6
204,324 - CSW01_01055 0.56 -0.6
204,324 - CSW01_01055 0.56 -3.6
204,324 - CSW01_01055 0.56 -1.4
204,324 - CSW01_01055 0.56 +1.5
204,326 + CSW01_01055 0.56 +1.2
204,326 + CSW01_01055 0.56 +0.6
204,326 + CSW01_01055 0.56 -0.3
204,326 + CSW01_01055 0.56 +0.4
204,334 - CSW01_01055 0.58 -0.4
204,360 + CSW01_01055 0.65 -2.0
204,360 + CSW01_01055 0.65 -0.5
204,368 - CSW01_01055 0.67 +0.8
204,368 - CSW01_01055 0.67 -2.6
204,381 + CSW01_01055 0.71 -3.4
204,447 - CSW01_01055 0.88 -3.8
204,463 - -0.5
204,472 + +1.9
204,507 + -0.4
204,515 - -1.1
204,515 - -3.9
204,515 - +1.1
204,515 - +1.1
204,515 - +0.9
204,559 - +2.2
204,561 + +0.4
204,569 - +1.6
204,599 + +0.9
204,599 + -1.6
204,599 + +0.5
204,599 + +0.0
204,599 + +0.7
204,607 - +0.9
204,748 + CSW01_01060 0.12 -0.8
204,778 - CSW01_01060 0.14 -0.4
204,788 - CSW01_01060 0.14 +0.9
204,790 - CSW01_01060 0.14 -5.2
204,827 + CSW01_01060 0.16 +1.6
204,827 + CSW01_01060 0.16 +0.6
204,827 + CSW01_01060 0.16 -1.9
204,828 - CSW01_01060 0.16 -1.4
204,835 - CSW01_01060 0.17 +4.1
204,850 + CSW01_01060 0.18 +0.3
204,850 + CSW01_01060 0.18 -0.3
204,850 + CSW01_01060 0.18 +0.1
204,850 + CSW01_01060 0.18 -1.3
204,850 + CSW01_01060 0.18 +1.3
204,858 - CSW01_01060 0.18 -2.4
204,858 - CSW01_01060 0.18 +1.0
204,858 - CSW01_01060 0.18 -0.0
204,877 + CSW01_01060 0.19 -2.3
204,878 + CSW01_01060 0.19 -3.6
204,878 + CSW01_01060 0.19 +0.9
204,878 + CSW01_01060 0.19 +0.9
204,886 - CSW01_01060 0.20 -1.7
204,886 - CSW01_01060 0.20 +0.6
204,886 - CSW01_01060 0.20 -2.1
204,893 + CSW01_01060 0.20 +0.3
204,901 - CSW01_01060 0.20 -1.4
204,935 + CSW01_01060 0.22 +0.6
204,980 - CSW01_01060 0.25 -0.3
204,980 - CSW01_01060 0.25 -0.0
205,008 + CSW01_01060 0.26 -3.1
205,021 - CSW01_01060 0.27 +0.1
205,063 + CSW01_01060 0.29 -1.6
205,078 + CSW01_01060 0.30 -3.0
205,093 - CSW01_01060 0.31 -0.1
205,098 + CSW01_01060 0.31 -0.2
205,106 - CSW01_01060 0.32 -2.1
205,112 + CSW01_01060 0.32 -0.0
205,140 + CSW01_01060 0.33 -1.4
205,165 + CSW01_01060 0.35 +1.9
205,165 + CSW01_01060 0.35 -1.9
205,165 + CSW01_01060 0.35 -4.0
205,254 + CSW01_01060 0.40 +1.8
205,269 + CSW01_01060 0.40 -0.1
205,277 - CSW01_01060 0.41 +0.7
205,277 - CSW01_01060 0.41 +0.3
205,351 - CSW01_01060 0.45 +0.3
205,352 - CSW01_01060 0.45 +2.3
205,355 + CSW01_01060 0.45 -3.1
205,373 - CSW01_01060 0.46 +1.4
205,382 - CSW01_01060 0.47 +1.2
205,467 - CSW01_01060 0.51 -3.6
205,482 + CSW01_01060 0.52 -0.2

Or see this region's nucleotide sequence