Experiment: ICP3_phage_411_MOI_rep2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CSW01_00800 and CSW01_00805 overlap by 35 nucleotides CSW01_00805 and CSW01_00810 are separated by 550 nucleotides
CSW01_00800: CSW01_00800 - glutamate racemase, at 149,279 to 150,076
_00800
CSW01_00805: CSW01_00805 - RNA-binding protein, at 150,042 to 150,500
_00805
CSW01_00810: CSW01_00810 - 16S ribosomal RNA, at 151,051 to 152,600
_00810
Position (kb) 150
151 Strain fitness (log2 ratio) -5
-4
-3
-2
-1
0
1
2
3 at 149.223 kb on + strand at 150.071 kb on + strand at 150.095 kb on + strand, within CSW01_00805 at 150.095 kb on + strand, within CSW01_00805 at 150.095 kb on + strand, within CSW01_00805 at 150.095 kb on + strand, within CSW01_00805 at 150.103 kb on - strand, within CSW01_00805 at 150.103 kb on - strand, within CSW01_00805 at 150.103 kb on - strand, within CSW01_00805 at 150.103 kb on - strand, within CSW01_00805 at 150.153 kb on - strand, within CSW01_00805 at 150.184 kb on - strand, within CSW01_00805 at 150.189 kb on + strand, within CSW01_00805 at 150.189 kb on + strand, within CSW01_00805 at 150.197 kb on - strand, within CSW01_00805 at 150.197 kb on - strand, within CSW01_00805 at 150.226 kb on + strand, within CSW01_00805 at 150.226 kb on + strand, within CSW01_00805 at 150.255 kb on - strand, within CSW01_00805 at 150.327 kb on - strand, within CSW01_00805 at 150.383 kb on - strand, within CSW01_00805 at 150.393 kb on - strand, within CSW01_00805 at 150.420 kb on + strand, within CSW01_00805 at 150.480 kb on - strand at 150.549 kb on - strand at 150.609 kb on + strand at 150.734 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction ICP3_phage_411_MOI_rep2 remove 149,223 + +3.2 150,071 + -1.8 150,095 + CSW01_00805 0.12 +2.1 150,095 + CSW01_00805 0.12 -3.3 150,095 + CSW01_00805 0.12 -1.4 150,095 + CSW01_00805 0.12 +2.1 150,103 - CSW01_00805 0.13 -2.5 150,103 - CSW01_00805 0.13 -0.8 150,103 - CSW01_00805 0.13 -0.6 150,103 - CSW01_00805 0.13 -0.7 150,153 - CSW01_00805 0.24 +0.2 150,184 - CSW01_00805 0.31 -3.1 150,189 + CSW01_00805 0.32 -0.1 150,189 + CSW01_00805 0.32 -0.0 150,197 - CSW01_00805 0.34 +0.9 150,197 - CSW01_00805 0.34 -0.6 150,226 + CSW01_00805 0.40 +1.3 150,226 + CSW01_00805 0.40 +1.6 150,255 - CSW01_00805 0.46 +0.9 150,327 - CSW01_00805 0.62 +1.7 150,383 - CSW01_00805 0.74 -0.6 150,393 - CSW01_00805 0.76 +0.5 150,420 + CSW01_00805 0.82 +0.5 150,480 - -3.7 150,549 - +1.5 150,609 + +0.9 150,734 + -5.1
Or see this region's nucleotide sequence