Strain Fitness in Vibrio cholerae E7946 ATCC 55056 around CSW01_00620

Experiment: ICP3_phage_411_MOI_rep2

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCSW01_00610 and CSW01_00615 are separated by 176 nucleotidesCSW01_00615 and CSW01_00620 are separated by 15 nucleotidesCSW01_00620 and CSW01_00625 are separated by 105 nucleotidesCSW01_00625 and CSW01_00630 overlap by 24 nucleotidesCSW01_00630 and CSW01_00635 are separated by 32 nucleotides CSW01_00610: CSW01_00610 - hydroxymethylbilane synthase, at 114,762 to 115,715 _00610 CSW01_00615: CSW01_00615 - hypothetical protein, at 115,892 to 116,038 _00615 CSW01_00620: CSW01_00620 - class I adenylate cyclase, at 116,054 to 118,585 _00620 CSW01_00625: CSW01_00625 - iron donor protein CyaY, at 118,691 to 119,005 _00625 CSW01_00630: CSW01_00630 - lipopeptide, at 118,982 to 119,197 _00630 CSW01_00635: CSW01_00635 - diaminopimelate decarboxylase, at 119,230 to 120,483 _00635 Position (kb) 116 117 118 119Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3at 115.712 kb on - strandat 115.794 kb on + strandat 115.897 kb on - strandat 115.935 kb on + strand, within CSW01_00615at 115.943 kb on - strand, within CSW01_00615at 116.059 kb on + strandat 116.067 kb on - strandat 117.293 kb on - strand, within CSW01_00620at 117.356 kb on - strand, within CSW01_00620at 117.364 kb on - strand, within CSW01_00620at 117.412 kb on + strand, within CSW01_00620at 117.412 kb on + strand, within CSW01_00620at 117.417 kb on + strand, within CSW01_00620at 117.417 kb on + strand, within CSW01_00620at 117.420 kb on - strand, within CSW01_00620at 117.420 kb on - strand, within CSW01_00620at 117.425 kb on - strand, within CSW01_00620at 117.558 kb on - strand, within CSW01_00620at 117.584 kb on - strand, within CSW01_00620at 117.613 kb on + strand, within CSW01_00620at 117.626 kb on - strand, within CSW01_00620at 117.693 kb on - strand, within CSW01_00620at 117.699 kb on + strand, within CSW01_00620at 117.812 kb on + strand, within CSW01_00620at 117.812 kb on + strand, within CSW01_00620at 117.869 kb on + strand, within CSW01_00620at 118.059 kb on - strand, within CSW01_00620at 118.091 kb on + strand, within CSW01_00620at 118.096 kb on + strand, within CSW01_00620at 118.096 kb on + strand, within CSW01_00620at 118.096 kb on + strand, within CSW01_00620at 118.104 kb on - strand, within CSW01_00620at 118.119 kb on - strand, within CSW01_00620at 118.156 kb on - strand, within CSW01_00620at 118.201 kb on + strand, within CSW01_00620at 118.209 kb on - strand, within CSW01_00620at 118.209 kb on - strand, within CSW01_00620at 118.283 kb on + strand, within CSW01_00620at 118.283 kb on + strand, within CSW01_00620at 118.380 kb on - strandat 118.500 kb on + strandat 118.508 kb on - strandat 118.526 kb on + strandat 118.545 kb on + strandat 118.548 kb on - strandat 118.558 kb on - strandat 118.629 kb on + strandat 118.697 kb on - strandat 118.708 kb on + strandat 118.734 kb on + strand, within CSW01_00625at 118.742 kb on - strand, within CSW01_00625at 118.742 kb on - strand, within CSW01_00625at 119.153 kb on + strand, within CSW01_00630at 119.155 kb on + strand, within CSW01_00630at 119.155 kb on + strand, within CSW01_00630at 119.155 kb on + strand, within CSW01_00630at 119.155 kb on + strand, within CSW01_00630at 119.155 kb on + strand, within CSW01_00630at 119.155 kb on + strand, within CSW01_00630at 119.155 kb on + strand, within CSW01_00630at 119.155 kb on + strand, within CSW01_00630at 119.163 kb on - strand, within CSW01_00630at 119.163 kb on - strand, within CSW01_00630at 119.163 kb on - strand, within CSW01_00630at 119.163 kb on - strand, within CSW01_00630at 119.163 kb on - strand, within CSW01_00630at 119.163 kb on - strand, within CSW01_00630at 119.163 kb on - strand, within CSW01_00630at 119.206 kb on + strandat 119.232 kb on + strandat 119.262 kb on + strandat 119.262 kb on + strandat 119.262 kb on + strandat 119.262 kb on + strandat 119.262 kb on + strandat 119.262 kb on + strandat 119.262 kb on + strandat 119.262 kb on + strandat 119.262 kb on + strandat 119.262 kb on + strandat 119.262 kb on + strandat 119.262 kb on + strandat 119.262 kb on + strandat 119.262 kb on + strandat 119.262 kb on + strandat 119.270 kb on - strandat 119.270 kb on - strandat 119.270 kb on - strandat 119.270 kb on - strandat 119.270 kb on - strandat 119.270 kb on - strandat 119.270 kb on - strandat 119.270 kb on - strandat 119.270 kb on - strandat 119.270 kb on - strandat 119.270 kb on - strandat 119.270 kb on - strandat 119.270 kb on - strandat 119.309 kb on + strandat 119.341 kb on + strandat 119.349 kb on + strandat 119.349 kb on - strandat 119.431 kb on + strand, within CSW01_00635at 119.455 kb on + strand, within CSW01_00635at 119.469 kb on - strand, within CSW01_00635at 119.510 kb on + strand, within CSW01_00635at 119.527 kb on + strand, within CSW01_00635at 119.534 kb on + strand, within CSW01_00635at 119.535 kb on - strand, within CSW01_00635

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Per-strain Table

Position Strand Gene LocusTag Fraction ICP3_phage_411_MOI_rep2
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115,712 - -0.5
115,794 + +1.1
115,897 - +0.5
115,935 + CSW01_00615 0.29 -1.1
115,943 - CSW01_00615 0.35 -0.4
116,059 + -1.9
116,067 - -1.7
117,293 - CSW01_00620 0.49 -1.9
117,356 - CSW01_00620 0.51 -1.6
117,364 - CSW01_00620 0.52 -1.4
117,412 + CSW01_00620 0.54 +2.0
117,412 + CSW01_00620 0.54 +2.6
117,417 + CSW01_00620 0.54 -2.7
117,417 + CSW01_00620 0.54 +0.4
117,420 - CSW01_00620 0.54 +1.9
117,420 - CSW01_00620 0.54 +1.1
117,425 - CSW01_00620 0.54 +1.7
117,558 - CSW01_00620 0.59 -2.5
117,584 - CSW01_00620 0.60 -1.6
117,613 + CSW01_00620 0.62 +1.6
117,626 - CSW01_00620 0.62 +2.9
117,693 - CSW01_00620 0.65 +1.2
117,699 + CSW01_00620 0.65 +2.3
117,812 + CSW01_00620 0.69 -0.9
117,812 + CSW01_00620 0.69 -3.0
117,869 + CSW01_00620 0.72 +3.2
118,059 - CSW01_00620 0.79 -1.4
118,091 + CSW01_00620 0.80 +1.5
118,096 + CSW01_00620 0.81 -3.1
118,096 + CSW01_00620 0.81 +1.8
118,096 + CSW01_00620 0.81 +0.7
118,104 - CSW01_00620 0.81 +1.9
118,119 - CSW01_00620 0.82 -1.0
118,156 - CSW01_00620 0.83 +0.2
118,201 + CSW01_00620 0.85 -1.4
118,209 - CSW01_00620 0.85 -1.4
118,209 - CSW01_00620 0.85 -2.0
118,283 + CSW01_00620 0.88 +0.7
118,283 + CSW01_00620 0.88 +1.3
118,380 - +0.6
118,500 + -2.2
118,508 - -2.3
118,526 + -2.4
118,545 + +0.0
118,548 - +1.3
118,558 - +2.6
118,629 + -3.8
118,697 - +0.2
118,708 + +0.4
118,734 + CSW01_00625 0.14 -2.4
118,742 - CSW01_00625 0.16 -1.2
118,742 - CSW01_00625 0.16 -0.9
119,153 + CSW01_00630 0.79 +0.2
119,155 + CSW01_00630 0.80 -0.8
119,155 + CSW01_00630 0.80 -0.9
119,155 + CSW01_00630 0.80 +0.1
119,155 + CSW01_00630 0.80 -3.4
119,155 + CSW01_00630 0.80 -0.7
119,155 + CSW01_00630 0.80 +1.2
119,155 + CSW01_00630 0.80 +1.0
119,155 + CSW01_00630 0.80 -1.3
119,163 - CSW01_00630 0.84 -3.0
119,163 - CSW01_00630 0.84 +0.5
119,163 - CSW01_00630 0.84 -0.2
119,163 - CSW01_00630 0.84 +0.9
119,163 - CSW01_00630 0.84 -1.5
119,163 - CSW01_00630 0.84 -3.1
119,163 - CSW01_00630 0.84 +0.4
119,206 + -1.9
119,232 + +1.9
119,262 + -2.6
119,262 + -1.4
119,262 + -0.2
119,262 + +1.6
119,262 + +1.0
119,262 + +0.1
119,262 + -3.0
119,262 + -3.5
119,262 + +1.1
119,262 + -0.0
119,262 + +1.0
119,262 + -0.4
119,262 + -0.4
119,262 + +0.2
119,262 + +0.0
119,270 - +0.3
119,270 - -1.4
119,270 - +0.1
119,270 - -0.6
119,270 - +3.4
119,270 - -0.9
119,270 - +0.6
119,270 - +1.2
119,270 - +1.2
119,270 - +0.8
119,270 - -1.6
119,270 - +1.5
119,270 - +0.7
119,309 + +1.5
119,341 + -2.3
119,349 + -0.5
119,349 - -3.2
119,431 + CSW01_00635 0.16 +0.9
119,455 + CSW01_00635 0.18 +0.9
119,469 - CSW01_00635 0.19 -3.3
119,510 + CSW01_00635 0.22 +0.5
119,527 + CSW01_00635 0.24 +0.0
119,534 + CSW01_00635 0.24 -0.2
119,535 - CSW01_00635 0.24 -1.0

Or see this region's nucleotide sequence