Strain Fitness in Vibrio cholerae E7946 ATCC 55056 around CSW01_00420

Experiment: ICP3_phage_411_MOI_rep2

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCSW01_00405 and CSW01_00410 are separated by 56 nucleotidesCSW01_00410 and CSW01_00415 are separated by 45 nucleotidesCSW01_00415 and CSW01_00420 are separated by 23 nucleotidesCSW01_00420 and CSW01_00425 are separated by 75 nucleotidesCSW01_00425 and CSW01_00430 are separated by 132 nucleotides CSW01_00405: CSW01_00405 - EamA family transporter, at 75,267 to 76,154 _00405 CSW01_00410: CSW01_00410 - universal stress protein UspA, at 76,211 to 76,636 _00410 CSW01_00415: CSW01_00415 - hypothetical protein, at 76,682 to 76,777 _00415 CSW01_00420: CSW01_00420 - ferritin, at 76,801 to 77,328 _00420 CSW01_00425: CSW01_00425 - universal stress protein B, at 77,404 to 77,727 _00425 CSW01_00430: CSW01_00430 - NAD(P)/FAD-dependent oxidoreductase, at 77,860 to 79,056 _00430 Position (kb) 76 77 78Strain fitness (log2 ratio) -5 -4 -3 -2 -1 0 1 2 3at 75.888 kb on + strand, within CSW01_00405at 75.888 kb on + strand, within CSW01_00405at 75.888 kb on + strand, within CSW01_00405at 75.888 kb on + strand, within CSW01_00405at 75.888 kb on + strand, within CSW01_00405at 75.894 kb on + strand, within CSW01_00405at 75.896 kb on - strand, within CSW01_00405at 75.896 kb on - strand, within CSW01_00405at 75.904 kb on + strand, within CSW01_00405at 75.937 kb on + strand, within CSW01_00405at 75.951 kb on + strand, within CSW01_00405at 75.953 kb on + strand, within CSW01_00405at 75.996 kb on + strand, within CSW01_00405at 75.996 kb on + strand, within CSW01_00405at 76.004 kb on - strand, within CSW01_00405at 76.004 kb on - strand, within CSW01_00405at 76.004 kb on - strand, within CSW01_00405at 76.004 kb on - strand, within CSW01_00405at 76.037 kb on - strand, within CSW01_00405at 76.046 kb on - strand, within CSW01_00405at 76.085 kb on - strandat 76.099 kb on - strandat 76.099 kb on - strandat 76.128 kb on - strandat 76.147 kb on - strandat 76.151 kb on + strandat 76.151 kb on + strandat 76.151 kb on + strandat 76.172 kb on + strandat 76.187 kb on + strandat 76.261 kb on - strand, within CSW01_00410at 76.261 kb on - strand, within CSW01_00410at 76.267 kb on + strand, within CSW01_00410at 76.272 kb on + strand, within CSW01_00410at 76.275 kb on - strand, within CSW01_00410at 76.275 kb on - strand, within CSW01_00410at 76.316 kb on - strand, within CSW01_00410at 76.344 kb on + strand, within CSW01_00410at 76.362 kb on - strand, within CSW01_00410at 76.385 kb on + strand, within CSW01_00410at 76.410 kb on - strand, within CSW01_00410at 76.491 kb on + strand, within CSW01_00410at 76.491 kb on + strand, within CSW01_00410at 76.494 kb on + strand, within CSW01_00410at 76.496 kb on + strand, within CSW01_00410at 76.499 kb on - strand, within CSW01_00410at 76.499 kb on - strand, within CSW01_00410at 76.501 kb on + strand, within CSW01_00410at 76.501 kb on + strand, within CSW01_00410at 76.501 kb on + strand, within CSW01_00410at 76.502 kb on - strand, within CSW01_00410at 76.502 kb on - strand, within CSW01_00410at 76.502 kb on - strand, within CSW01_00410at 76.506 kb on + strand, within CSW01_00410at 76.509 kb on - strand, within CSW01_00410at 76.509 kb on - strand, within CSW01_00410at 76.511 kb on + strand, within CSW01_00410at 76.519 kb on - strand, within CSW01_00410at 76.519 kb on - strand, within CSW01_00410at 76.523 kb on - strand, within CSW01_00410at 76.559 kb on - strand, within CSW01_00410at 76.592 kb on - strand, within CSW01_00410at 76.600 kb on - strandat 76.603 kb on + strandat 76.659 kb on + strandat 76.659 kb on + strandat 76.659 kb on + strandat 76.659 kb on + strandat 76.659 kb on + strandat 76.659 kb on + strandat 76.667 kb on - strandat 76.669 kb on + strandat 76.669 kb on + strandat 76.669 kb on + strandat 76.669 kb on + strandat 76.669 kb on + strandat 76.674 kb on + strandat 76.674 kb on + strandat 76.674 kb on + strandat 76.674 kb on + strandat 76.677 kb on - strandat 76.677 kb on - strandat 76.677 kb on - strandat 76.680 kb on - strandat 76.682 kb on - strandat 76.682 kb on - strandat 76.682 kb on - strandat 76.724 kb on + strand, within CSW01_00415at 76.724 kb on + strand, within CSW01_00415at 76.756 kb on + strand, within CSW01_00415at 76.897 kb on + strand, within CSW01_00420at 76.923 kb on - strand, within CSW01_00420at 76.931 kb on - strand, within CSW01_00420at 76.976 kb on - strand, within CSW01_00420at 77.006 kb on + strand, within CSW01_00420at 77.049 kb on + strand, within CSW01_00420at 77.129 kb on + strand, within CSW01_00420at 77.130 kb on - strand, within CSW01_00420at 77.137 kb on - strand, within CSW01_00420at 77.146 kb on + strand, within CSW01_00420at 77.171 kb on + strand, within CSW01_00420at 77.179 kb on - strand, within CSW01_00420at 77.179 kb on - strand, within CSW01_00420at 77.179 kb on - strand, within CSW01_00420at 77.181 kb on + strand, within CSW01_00420at 77.181 kb on + strand, within CSW01_00420at 77.189 kb on - strand, within CSW01_00420at 77.219 kb on + strand, within CSW01_00420at 77.219 kb on + strand, within CSW01_00420at 77.219 kb on + strand, within CSW01_00420at 77.219 kb on + strand, within CSW01_00420at 77.219 kb on + strand, within CSW01_00420at 77.219 kb on + strand, within CSW01_00420at 77.219 kb on + strand, within CSW01_00420at 77.219 kb on + strand, within CSW01_00420at 77.219 kb on + strand, within CSW01_00420at 77.227 kb on - strand, within CSW01_00420at 77.227 kb on - strand, within CSW01_00420at 77.227 kb on - strand, within CSW01_00420at 77.387 kb on - strandat 77.395 kb on - strandat 77.429 kb on - strandat 77.474 kb on - strand, within CSW01_00425at 77.515 kb on - strand, within CSW01_00425at 77.546 kb on + strand, within CSW01_00425at 77.565 kb on - strand, within CSW01_00425at 77.565 kb on - strand, within CSW01_00425at 77.606 kb on + strand, within CSW01_00425at 77.614 kb on - strand, within CSW01_00425at 77.657 kb on + strand, within CSW01_00425at 77.657 kb on - strand, within CSW01_00425at 77.695 kb on + strandat 77.697 kb on - strandat 77.703 kb on - strandat 77.703 kb on - strandat 77.781 kb on - strandat 77.816 kb on + strandat 77.823 kb on + strandat 77.824 kb on - strandat 77.824 kb on - strandat 77.866 kb on + strandat 77.879 kb on - strandat 77.914 kb on + strandat 77.914 kb on + strandat 77.914 kb on + strandat 77.927 kb on - strandat 77.932 kb on - strandat 77.932 kb on - strandat 77.954 kb on + strandat 78.067 kb on + strand, within CSW01_00430at 78.145 kb on + strand, within CSW01_00430at 78.146 kb on + strand, within CSW01_00430at 78.146 kb on + strand, within CSW01_00430at 78.146 kb on + strand, within CSW01_00430at 78.146 kb on + strand, within CSW01_00430at 78.146 kb on + strand, within CSW01_00430at 78.154 kb on - strand, within CSW01_00430at 78.154 kb on - strand, within CSW01_00430at 78.154 kb on - strand, within CSW01_00430at 78.154 kb on - strand, within CSW01_00430at 78.182 kb on - strand, within CSW01_00430at 78.182 kb on - strand, within CSW01_00430at 78.208 kb on + strand, within CSW01_00430at 78.221 kb on + strand, within CSW01_00430at 78.228 kb on - strand, within CSW01_00430at 78.231 kb on + strand, within CSW01_00430at 78.232 kb on - strand, within CSW01_00430at 78.259 kb on - strand, within CSW01_00430at 78.269 kb on + strand, within CSW01_00430at 78.273 kb on + strand, within CSW01_00430at 78.277 kb on - strand, within CSW01_00430at 78.279 kb on - strand, within CSW01_00430at 78.281 kb on - strand, within CSW01_00430at 78.290 kb on + strand, within CSW01_00430at 78.290 kb on + strand, within CSW01_00430at 78.290 kb on + strand, within CSW01_00430at 78.298 kb on - strand, within CSW01_00430at 78.298 kb on - strand, within CSW01_00430at 78.298 kb on - strand, within CSW01_00430

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Per-strain Table

Position Strand Gene LocusTag Fraction ICP3_phage_411_MOI_rep2
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75,888 + CSW01_00405 0.70 -0.2
75,888 + CSW01_00405 0.70 +1.2
75,888 + CSW01_00405 0.70 -3.6
75,888 + CSW01_00405 0.70 -0.7
75,888 + CSW01_00405 0.70 +0.3
75,894 + CSW01_00405 0.71 -1.1
75,896 - CSW01_00405 0.71 +1.2
75,896 - CSW01_00405 0.71 -0.4
75,904 + CSW01_00405 0.72 +1.3
75,937 + CSW01_00405 0.75 -0.7
75,951 + CSW01_00405 0.77 -3.0
75,953 + CSW01_00405 0.77 +0.2
75,996 + CSW01_00405 0.82 -4.2
75,996 + CSW01_00405 0.82 +1.2
76,004 - CSW01_00405 0.83 -2.8
76,004 - CSW01_00405 0.83 +0.1
76,004 - CSW01_00405 0.83 +0.2
76,004 - CSW01_00405 0.83 -3.7
76,037 - CSW01_00405 0.87 +0.4
76,046 - CSW01_00405 0.88 -2.6
76,085 - -1.6
76,099 - -0.4
76,099 - +0.9
76,128 - +1.2
76,147 - +0.8
76,151 + -4.2
76,151 + -1.7
76,151 + -0.3
76,172 + +1.9
76,187 + -3.6
76,261 - CSW01_00410 0.12 +1.1
76,261 - CSW01_00410 0.12 +0.6
76,267 + CSW01_00410 0.13 -1.5
76,272 + CSW01_00410 0.14 -3.2
76,275 - CSW01_00410 0.15 +0.6
76,275 - CSW01_00410 0.15 -1.5
76,316 - CSW01_00410 0.25 -0.4
76,344 + CSW01_00410 0.31 +0.0
76,362 - CSW01_00410 0.35 -0.5
76,385 + CSW01_00410 0.41 -0.3
76,410 - CSW01_00410 0.47 +0.5
76,491 + CSW01_00410 0.66 -4.8
76,491 + CSW01_00410 0.66 -1.5
76,494 + CSW01_00410 0.66 +1.2
76,496 + CSW01_00410 0.67 +1.6
76,499 - CSW01_00410 0.68 +0.9
76,499 - CSW01_00410 0.68 -0.9
76,501 + CSW01_00410 0.68 +0.5
76,501 + CSW01_00410 0.68 +0.4
76,501 + CSW01_00410 0.68 -1.2
76,502 - CSW01_00410 0.68 +0.4
76,502 - CSW01_00410 0.68 -0.9
76,502 - CSW01_00410 0.68 +1.0
76,506 + CSW01_00410 0.69 +1.1
76,509 - CSW01_00410 0.70 +0.4
76,509 - CSW01_00410 0.70 -1.3
76,511 + CSW01_00410 0.70 +0.8
76,519 - CSW01_00410 0.72 -0.6
76,519 - CSW01_00410 0.72 +0.2
76,523 - CSW01_00410 0.73 -2.4
76,559 - CSW01_00410 0.82 -4.9
76,592 - CSW01_00410 0.89 -1.3
76,600 - -3.0
76,603 + -0.2
76,659 + +1.0
76,659 + -1.0
76,659 + +0.4
76,659 + +1.0
76,659 + -1.7
76,659 + -0.7
76,667 - -0.3
76,669 + +1.0
76,669 + +1.1
76,669 + +0.0
76,669 + +0.3
76,669 + -0.9
76,674 + -0.3
76,674 + -3.4
76,674 + -0.6
76,674 + +0.2
76,677 - +1.4
76,677 - +0.9
76,677 - -0.2
76,680 - +0.4
76,682 - +0.8
76,682 - -2.8
76,682 - -2.8
76,724 + CSW01_00415 0.44 +0.2
76,724 + CSW01_00415 0.44 -1.3
76,756 + CSW01_00415 0.77 +0.5
76,897 + CSW01_00420 0.18 +1.5
76,923 - CSW01_00420 0.23 -2.0
76,931 - CSW01_00420 0.25 -2.8
76,976 - CSW01_00420 0.33 -0.4
77,006 + CSW01_00420 0.39 -0.6
77,049 + CSW01_00420 0.47 +1.3
77,129 + CSW01_00420 0.62 +1.3
77,130 - CSW01_00420 0.62 +0.2
77,137 - CSW01_00420 0.64 -3.2
77,146 + CSW01_00420 0.65 -0.0
77,171 + CSW01_00420 0.70 +1.2
77,179 - CSW01_00420 0.72 -1.6
77,179 - CSW01_00420 0.72 -0.6
77,179 - CSW01_00420 0.72 -0.3
77,181 + CSW01_00420 0.72 -3.5
77,181 + CSW01_00420 0.72 -0.4
77,189 - CSW01_00420 0.73 +0.1
77,219 + CSW01_00420 0.79 -1.1
77,219 + CSW01_00420 0.79 +1.7
77,219 + CSW01_00420 0.79 -3.3
77,219 + CSW01_00420 0.79 -2.7
77,219 + CSW01_00420 0.79 +1.7
77,219 + CSW01_00420 0.79 +0.4
77,219 + CSW01_00420 0.79 +0.1
77,219 + CSW01_00420 0.79 -1.3
77,219 + CSW01_00420 0.79 -3.2
77,227 - CSW01_00420 0.81 -1.4
77,227 - CSW01_00420 0.81 -0.7
77,227 - CSW01_00420 0.81 -0.8
77,387 - -0.2
77,395 - -0.8
77,429 - -1.4
77,474 - CSW01_00425 0.22 -0.6
77,515 - CSW01_00425 0.34 -5.0
77,546 + CSW01_00425 0.44 -0.4
77,565 - CSW01_00425 0.50 +3.0
77,565 - CSW01_00425 0.50 +0.0
77,606 + CSW01_00425 0.62 +0.4
77,614 - CSW01_00425 0.65 -0.7
77,657 + CSW01_00425 0.78 -4.0
77,657 - CSW01_00425 0.78 +0.3
77,695 + +0.2
77,697 - -0.7
77,703 - -3.8
77,703 - -3.0
77,781 - -3.7
77,816 + -1.3
77,823 + -2.8
77,824 - -1.5
77,824 - +0.7
77,866 + +1.0
77,879 - +1.9
77,914 + +0.6
77,914 + +0.3
77,914 + +0.7
77,927 - -0.3
77,932 - -2.7
77,932 - +1.0
77,954 + -2.9
78,067 + CSW01_00430 0.17 +0.6
78,145 + CSW01_00430 0.24 -2.4
78,146 + CSW01_00430 0.24 -4.0
78,146 + CSW01_00430 0.24 -0.8
78,146 + CSW01_00430 0.24 +0.9
78,146 + CSW01_00430 0.24 +0.0
78,146 + CSW01_00430 0.24 -1.9
78,154 - CSW01_00430 0.25 -4.5
78,154 - CSW01_00430 0.25 -1.9
78,154 - CSW01_00430 0.25 -0.4
78,154 - CSW01_00430 0.25 +0.7
78,182 - CSW01_00430 0.27 +0.1
78,182 - CSW01_00430 0.27 +0.3
78,208 + CSW01_00430 0.29 -0.1
78,221 + CSW01_00430 0.30 -1.6
78,228 - CSW01_00430 0.31 -2.0
78,231 + CSW01_00430 0.31 -4.4
78,232 - CSW01_00430 0.31 -0.9
78,259 - CSW01_00430 0.33 -3.1
78,269 + CSW01_00430 0.34 -0.8
78,273 + CSW01_00430 0.35 -2.4
78,277 - CSW01_00430 0.35 +1.3
78,279 - CSW01_00430 0.35 +0.8
78,281 - CSW01_00430 0.35 +1.2
78,290 + CSW01_00430 0.36 +0.2
78,290 + CSW01_00430 0.36 -3.6
78,290 + CSW01_00430 0.36 +0.9
78,298 - CSW01_00430 0.37 -4.6
78,298 - CSW01_00430 0.37 -0.3
78,298 - CSW01_00430 0.37 -0.4

Or see this region's nucleotide sequence