Strain Fitness in Vibrio cholerae E7946 ATCC 55056 around CSW01_00235

Experiment: ICP3_phage_411_MOI_rep2

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCSW01_00230 and CSW01_00235 are separated by 17 nucleotidesCSW01_00235 and CSW01_00240 are separated by 91 nucleotides CSW01_00230: CSW01_00230 - methionyl-tRNA formyltransferase, at 43,334 to 44,281 _00230 CSW01_00235: CSW01_00235 - peptide deformylase, at 44,299 to 44,808 _00235 CSW01_00240: CSW01_00240 - LysM peptidoglycan-binding domain-containing protein, at 44,900 to 46,075 _00240 Position (kb) 44 45Strain fitness (log2 ratio) -5 -4 -3 -2 -1 0 1 2 3at 43.319 kb on + strandat 43.319 kb on + strandat 43.319 kb on + strandat 43.362 kb on - strandat 44.295 kb on - strandat 44.420 kb on - strand, within CSW01_00235at 44.449 kb on - strand, within CSW01_00235at 44.463 kb on - strand, within CSW01_00235at 44.463 kb on - strand, within CSW01_00235at 44.463 kb on - strand, within CSW01_00235at 44.463 kb on - strand, within CSW01_00235at 44.463 kb on - strand, within CSW01_00235at 44.498 kb on - strand, within CSW01_00235at 44.513 kb on - strand, within CSW01_00235at 44.515 kb on - strand, within CSW01_00235at 44.547 kb on - strand, within CSW01_00235at 44.585 kb on - strand, within CSW01_00235at 44.770 kb on - strandat 44.828 kb on - strandat 44.828 kb on - strandat 44.828 kb on - strandat 44.828 kb on - strandat 44.828 kb on - strandat 44.839 kb on - strandat 44.849 kb on - strandat 44.886 kb on - strandat 44.944 kb on + strandat 44.962 kb on - strandat 44.986 kb on + strandat 44.988 kb on + strandat 45.001 kb on - strandat 45.003 kb on + strandat 45.003 kb on + strandat 45.003 kb on + strandat 45.003 kb on + strandat 45.006 kb on - strandat 45.006 kb on - strandat 45.006 kb on - strandat 45.010 kb on + strandat 45.011 kb on - strandat 45.011 kb on - strandat 45.016 kb on - strandat 45.018 kb on - strand, within CSW01_00240at 45.061 kb on + strand, within CSW01_00240at 45.061 kb on - strand, within CSW01_00240at 45.063 kb on + strand, within CSW01_00240at 45.063 kb on + strand, within CSW01_00240at 45.063 kb on + strand, within CSW01_00240at 45.063 kb on + strand, within CSW01_00240at 45.063 kb on + strand, within CSW01_00240at 45.069 kb on - strand, within CSW01_00240at 45.073 kb on + strand, within CSW01_00240at 45.073 kb on + strand, within CSW01_00240at 45.081 kb on - strand, within CSW01_00240at 45.087 kb on - strand, within CSW01_00240at 45.087 kb on - strand, within CSW01_00240at 45.110 kb on + strand, within CSW01_00240at 45.120 kb on + strand, within CSW01_00240at 45.120 kb on + strand, within CSW01_00240at 45.120 kb on + strand, within CSW01_00240at 45.120 kb on + strand, within CSW01_00240at 45.120 kb on + strand, within CSW01_00240at 45.120 kb on + strand, within CSW01_00240at 45.120 kb on + strand, within CSW01_00240at 45.127 kb on + strand, within CSW01_00240at 45.128 kb on - strand, within CSW01_00240at 45.128 kb on - strand, within CSW01_00240at 45.128 kb on - strand, within CSW01_00240at 45.128 kb on - strand, within CSW01_00240at 45.128 kb on - strand, within CSW01_00240at 45.128 kb on - strand, within CSW01_00240at 45.128 kb on - strand, within CSW01_00240at 45.128 kb on - strand, within CSW01_00240at 45.128 kb on - strand, within CSW01_00240at 45.128 kb on - strand, within CSW01_00240at 45.128 kb on - strand, within CSW01_00240at 45.128 kb on - strand, within CSW01_00240at 45.128 kb on - strand, within CSW01_00240at 45.128 kb on - strand, within CSW01_00240at 45.128 kb on - strand, within CSW01_00240at 45.128 kb on - strand, within CSW01_00240at 45.128 kb on - strand, within CSW01_00240at 45.128 kb on - strand, within CSW01_00240at 45.128 kb on - strand, within CSW01_00240at 45.128 kb on - strand, within CSW01_00240at 45.128 kb on - strand, within CSW01_00240at 45.128 kb on - strand, within CSW01_00240at 45.132 kb on + strand, within CSW01_00240at 45.132 kb on + strand, within CSW01_00240at 45.132 kb on + strand, within CSW01_00240at 45.132 kb on + strand, within CSW01_00240at 45.140 kb on - strand, within CSW01_00240at 45.140 kb on - strand, within CSW01_00240at 45.140 kb on - strand, within CSW01_00240at 45.205 kb on + strand, within CSW01_00240at 45.205 kb on + strand, within CSW01_00240at 45.213 kb on - strand, within CSW01_00240at 45.213 kb on - strand, within CSW01_00240at 45.213 kb on - strand, within CSW01_00240at 45.224 kb on + strand, within CSW01_00240at 45.224 kb on + strand, within CSW01_00240at 45.224 kb on + strand, within CSW01_00240at 45.224 kb on + strand, within CSW01_00240at 45.224 kb on + strand, within CSW01_00240at 45.234 kb on + strand, within CSW01_00240at 45.234 kb on + strand, within CSW01_00240at 45.242 kb on - strand, within CSW01_00240at 45.242 kb on - strand, within CSW01_00240at 45.242 kb on - strand, within CSW01_00240at 45.242 kb on - strand, within CSW01_00240at 45.242 kb on - strand, within CSW01_00240at 45.288 kb on - strand, within CSW01_00240at 45.290 kb on + strand, within CSW01_00240at 45.297 kb on - strand, within CSW01_00240at 45.307 kb on - strand, within CSW01_00240at 45.307 kb on - strand, within CSW01_00240at 45.307 kb on - strand, within CSW01_00240at 45.314 kb on + strand, within CSW01_00240at 45.317 kb on - strand, within CSW01_00240at 45.367 kb on - strand, within CSW01_00240at 45.373 kb on - strand, within CSW01_00240at 45.389 kb on + strand, within CSW01_00240at 45.392 kb on - strand, within CSW01_00240at 45.414 kb on + strand, within CSW01_00240at 45.432 kb on - strand, within CSW01_00240at 45.437 kb on + strand, within CSW01_00240at 45.437 kb on + strand, within CSW01_00240at 45.437 kb on + strand, within CSW01_00240at 45.445 kb on - strand, within CSW01_00240at 45.445 kb on - strand, within CSW01_00240at 45.445 kb on - strand, within CSW01_00240at 45.445 kb on - strand, within CSW01_00240at 45.448 kb on - strand, within CSW01_00240at 45.482 kb on - strand, within CSW01_00240at 45.482 kb on - strand, within CSW01_00240at 45.482 kb on - strand, within CSW01_00240at 45.482 kb on - strand, within CSW01_00240at 45.482 kb on - strand, within CSW01_00240at 45.482 kb on - strand, within CSW01_00240at 45.482 kb on - strand, within CSW01_00240at 45.484 kb on + strand, within CSW01_00240at 45.484 kb on + strand, within CSW01_00240at 45.484 kb on + strand, within CSW01_00240at 45.484 kb on + strand, within CSW01_00240at 45.492 kb on - strand, within CSW01_00240at 45.517 kb on + strand, within CSW01_00240at 45.566 kb on + strand, within CSW01_00240at 45.567 kb on + strand, within CSW01_00240at 45.567 kb on - strand, within CSW01_00240at 45.574 kb on - strand, within CSW01_00240at 45.579 kb on - strand, within CSW01_00240at 45.616 kb on - strand, within CSW01_00240at 45.630 kb on + strand, within CSW01_00240at 45.630 kb on + strand, within CSW01_00240at 45.630 kb on + strand, within CSW01_00240at 45.630 kb on + strand, within CSW01_00240at 45.630 kb on + strand, within CSW01_00240at 45.630 kb on + strand, within CSW01_00240at 45.630 kb on + strand, within CSW01_00240at 45.638 kb on - strand, within CSW01_00240at 45.638 kb on - strand, within CSW01_00240at 45.638 kb on - strand, within CSW01_00240at 45.638 kb on - strand, within CSW01_00240at 45.649 kb on + strand, within CSW01_00240at 45.697 kb on + strand, within CSW01_00240at 45.716 kb on - strand, within CSW01_00240at 45.739 kb on - strand, within CSW01_00240at 45.763 kb on - strand, within CSW01_00240at 45.779 kb on + strand, within CSW01_00240at 45.779 kb on + strand, within CSW01_00240at 45.779 kb on + strand, within CSW01_00240at 45.779 kb on + strand, within CSW01_00240at 45.779 kb on + strand, within CSW01_00240at 45.784 kb on + strand, within CSW01_00240at 45.787 kb on - strand, within CSW01_00240at 45.787 kb on - strand, within CSW01_00240at 45.787 kb on - strand, within CSW01_00240at 45.792 kb on + strand, within CSW01_00240at 45.793 kb on + strand, within CSW01_00240at 45.802 kb on + strand, within CSW01_00240at 45.802 kb on + strand, within CSW01_00240

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Per-strain Table

Position Strand Gene LocusTag Fraction ICP3_phage_411_MOI_rep2
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43,319 + +0.4
43,319 + +0.2
43,319 + +0.3
43,362 - -2.2
44,295 - -3.5
44,420 - CSW01_00235 0.24 -0.2
44,449 - CSW01_00235 0.29 +1.0
44,463 - CSW01_00235 0.32 -2.7
44,463 - CSW01_00235 0.32 -0.7
44,463 - CSW01_00235 0.32 +0.0
44,463 - CSW01_00235 0.32 +1.1
44,463 - CSW01_00235 0.32 -2.6
44,498 - CSW01_00235 0.39 +0.2
44,513 - CSW01_00235 0.42 -1.9
44,515 - CSW01_00235 0.42 -1.9
44,547 - CSW01_00235 0.49 -0.4
44,585 - CSW01_00235 0.56 -1.0
44,770 - +3.3
44,828 - -2.7
44,828 - +0.7
44,828 - -1.6
44,828 - -4.9
44,828 - -0.9
44,839 - -2.6
44,849 - +1.4
44,886 - -3.2
44,944 + -2.2
44,962 - -0.1
44,986 + -0.2
44,988 + -4.8
45,001 - -3.1
45,003 + -0.5
45,003 + +0.2
45,003 + +1.7
45,003 + -0.8
45,006 - -4.4
45,006 - -0.3
45,006 - +0.8
45,010 + -3.3
45,011 - +3.2
45,011 - +1.0
45,016 - +0.4
45,018 - CSW01_00240 0.10 -0.6
45,061 + CSW01_00240 0.14 -3.4
45,061 - CSW01_00240 0.14 -0.5
45,063 + CSW01_00240 0.14 +0.6
45,063 + CSW01_00240 0.14 +1.3
45,063 + CSW01_00240 0.14 -0.4
45,063 + CSW01_00240 0.14 +0.9
45,063 + CSW01_00240 0.14 +0.5
45,069 - CSW01_00240 0.14 -4.7
45,073 + CSW01_00240 0.15 -1.3
45,073 + CSW01_00240 0.15 -2.8
45,081 - CSW01_00240 0.15 -4.0
45,087 - CSW01_00240 0.16 -0.5
45,087 - CSW01_00240 0.16 -1.1
45,110 + CSW01_00240 0.18 -0.2
45,120 + CSW01_00240 0.19 +0.4
45,120 + CSW01_00240 0.19 -3.2
45,120 + CSW01_00240 0.19 +0.2
45,120 + CSW01_00240 0.19 -1.2
45,120 + CSW01_00240 0.19 +0.3
45,120 + CSW01_00240 0.19 -2.5
45,120 + CSW01_00240 0.19 -3.7
45,127 + CSW01_00240 0.19 -0.8
45,128 - CSW01_00240 0.19 +1.5
45,128 - CSW01_00240 0.19 +0.8
45,128 - CSW01_00240 0.19 +0.5
45,128 - CSW01_00240 0.19 -1.4
45,128 - CSW01_00240 0.19 +0.6
45,128 - CSW01_00240 0.19 -3.1
45,128 - CSW01_00240 0.19 +0.5
45,128 - CSW01_00240 0.19 +1.4
45,128 - CSW01_00240 0.19 +0.7
45,128 - CSW01_00240 0.19 +0.8
45,128 - CSW01_00240 0.19 +0.4
45,128 - CSW01_00240 0.19 -0.7
45,128 - CSW01_00240 0.19 +0.6
45,128 - CSW01_00240 0.19 +0.1
45,128 - CSW01_00240 0.19 +0.9
45,128 - CSW01_00240 0.19 -0.7
45,128 - CSW01_00240 0.19 -1.6
45,128 - CSW01_00240 0.19 +1.0
45,128 - CSW01_00240 0.19 -4.4
45,128 - CSW01_00240 0.19 -2.7
45,128 - CSW01_00240 0.19 -0.5
45,128 - CSW01_00240 0.19 -1.7
45,132 + CSW01_00240 0.20 -0.4
45,132 + CSW01_00240 0.20 +1.3
45,132 + CSW01_00240 0.20 +0.6
45,132 + CSW01_00240 0.20 +1.2
45,140 - CSW01_00240 0.20 +0.6
45,140 - CSW01_00240 0.20 -3.4
45,140 - CSW01_00240 0.20 -2.0
45,205 + CSW01_00240 0.26 +0.5
45,205 + CSW01_00240 0.26 -1.5
45,213 - CSW01_00240 0.27 +0.0
45,213 - CSW01_00240 0.27 -3.4
45,213 - CSW01_00240 0.27 -5.1
45,224 + CSW01_00240 0.28 +0.2
45,224 + CSW01_00240 0.28 +0.9
45,224 + CSW01_00240 0.28 -0.1
45,224 + CSW01_00240 0.28 -4.5
45,224 + CSW01_00240 0.28 -0.8
45,234 + CSW01_00240 0.28 -0.4
45,234 + CSW01_00240 0.28 -2.7
45,242 - CSW01_00240 0.29 +0.8
45,242 - CSW01_00240 0.29 +0.6
45,242 - CSW01_00240 0.29 -1.1
45,242 - CSW01_00240 0.29 +1.8
45,242 - CSW01_00240 0.29 -1.2
45,288 - CSW01_00240 0.33 +0.1
45,290 + CSW01_00240 0.33 -3.5
45,297 - CSW01_00240 0.34 +1.9
45,307 - CSW01_00240 0.35 -0.2
45,307 - CSW01_00240 0.35 +1.1
45,307 - CSW01_00240 0.35 -1.3
45,314 + CSW01_00240 0.35 +1.9
45,317 - CSW01_00240 0.35 -0.4
45,367 - CSW01_00240 0.40 -3.4
45,373 - CSW01_00240 0.40 +0.6
45,389 + CSW01_00240 0.42 -0.4
45,392 - CSW01_00240 0.42 -2.9
45,414 + CSW01_00240 0.44 +1.7
45,432 - CSW01_00240 0.45 -0.1
45,437 + CSW01_00240 0.46 -1.5
45,437 + CSW01_00240 0.46 +1.0
45,437 + CSW01_00240 0.46 -0.2
45,445 - CSW01_00240 0.46 -2.6
45,445 - CSW01_00240 0.46 +2.3
45,445 - CSW01_00240 0.46 +0.9
45,445 - CSW01_00240 0.46 +0.1
45,448 - CSW01_00240 0.47 -0.9
45,482 - CSW01_00240 0.49 -0.5
45,482 - CSW01_00240 0.49 -3.7
45,482 - CSW01_00240 0.49 +0.2
45,482 - CSW01_00240 0.49 -0.6
45,482 - CSW01_00240 0.49 +0.1
45,482 - CSW01_00240 0.49 -0.8
45,482 - CSW01_00240 0.49 -3.0
45,484 + CSW01_00240 0.50 +1.3
45,484 + CSW01_00240 0.50 -1.7
45,484 + CSW01_00240 0.50 +1.2
45,484 + CSW01_00240 0.50 -0.9
45,492 - CSW01_00240 0.50 +0.0
45,517 + CSW01_00240 0.52 +1.2
45,566 + CSW01_00240 0.57 +0.7
45,567 + CSW01_00240 0.57 -3.9
45,567 - CSW01_00240 0.57 -1.9
45,574 - CSW01_00240 0.57 +0.8
45,579 - CSW01_00240 0.58 +0.5
45,616 - CSW01_00240 0.61 -0.9
45,630 + CSW01_00240 0.62 -4.3
45,630 + CSW01_00240 0.62 +0.1
45,630 + CSW01_00240 0.62 -0.1
45,630 + CSW01_00240 0.62 -1.2
45,630 + CSW01_00240 0.62 -2.4
45,630 + CSW01_00240 0.62 +1.0
45,630 + CSW01_00240 0.62 -2.5
45,638 - CSW01_00240 0.63 +0.2
45,638 - CSW01_00240 0.63 -0.0
45,638 - CSW01_00240 0.63 -1.0
45,638 - CSW01_00240 0.63 -3.7
45,649 + CSW01_00240 0.64 -3.1
45,697 + CSW01_00240 0.68 +1.4
45,716 - CSW01_00240 0.69 +1.2
45,739 - CSW01_00240 0.71 -2.6
45,763 - CSW01_00240 0.73 +1.1
45,779 + CSW01_00240 0.75 +0.6
45,779 + CSW01_00240 0.75 -0.6
45,779 + CSW01_00240 0.75 +1.0
45,779 + CSW01_00240 0.75 +2.9
45,779 + CSW01_00240 0.75 -2.3
45,784 + CSW01_00240 0.75 -1.0
45,787 - CSW01_00240 0.75 +2.4
45,787 - CSW01_00240 0.75 -2.2
45,787 - CSW01_00240 0.75 -2.7
45,792 + CSW01_00240 0.76 -0.8
45,793 + CSW01_00240 0.76 -3.3
45,802 + CSW01_00240 0.77 -3.7
45,802 + CSW01_00240 0.77 +0.7

Or see this region's nucleotide sequence