Experiment: ICP3_phage_411_MOI_rep2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CSW01_00180 and CSW01_00185 are separated by 291 nucleotides CSW01_00185 and CSW01_00190 overlap by 55 nucleotides CSW01_00190 and CSW01_00195 are separated by 108 nucleotides CSW01_00195 and CSW01_00200 are separated by 233 nucleotides
CSW01_00180: CSW01_00180 - cytochrome c oxidase accessory protein CcoG, at 34,311 to 35,735
_00180
CSW01_00185: CSW01_00185 - hypothetical protein, at 36,027 to 36,206
_00185
CSW01_00190: CSW01_00190 - DUF1040 domain-containing protein, at 36,152 to 36,418
_00190
CSW01_00195: CSW01_00195 - hypothetical protein, at 36,527 to 36,694
_00195
CSW01_00200: CSW01_00200 - sporulation control protein Spo0M, at 36,928 to 37,770
_00200
Position (kb) 36
37 Strain fitness (log2 ratio) -5
-4
-3
-2
-1
0
1 at 35.162 kb on + strand, within CSW01_00180 at 35.244 kb on + strand, within CSW01_00180 at 35.245 kb on - strand, within CSW01_00180 at 35.245 kb on - strand, within CSW01_00180 at 35.245 kb on - strand, within CSW01_00180 at 35.245 kb on - strand, within CSW01_00180 at 35.280 kb on + strand, within CSW01_00180 at 35.367 kb on + strand, within CSW01_00180 at 35.367 kb on + strand, within CSW01_00180 at 35.367 kb on + strand, within CSW01_00180 at 35.367 kb on + strand, within CSW01_00180 at 35.387 kb on + strand, within CSW01_00180 at 35.409 kb on + strand, within CSW01_00180 at 35.414 kb on + strand, within CSW01_00180 at 35.459 kb on - strand, within CSW01_00180 at 35.459 kb on - strand, within CSW01_00180 at 35.459 kb on - strand, within CSW01_00180 at 35.460 kb on - strand, within CSW01_00180 at 35.469 kb on + strand, within CSW01_00180 at 35.528 kb on - strand, within CSW01_00180 at 35.570 kb on + strand, within CSW01_00180 at 35.592 kb on - strand, within CSW01_00180 at 35.653 kb on - strand at 35.661 kb on + strand at 35.669 kb on - strand at 35.677 kb on - strand at 35.679 kb on - strand at 35.683 kb on + strand at 35.727 kb on - strand at 35.727 kb on - strand at 35.739 kb on - strand at 35.812 kb on - strand at 35.858 kb on - strand at 35.892 kb on - strand at 35.935 kb on - strand at 35.935 kb on - strand at 35.980 kb on + strand at 35.980 kb on + strand at 35.980 kb on + strand at 35.988 kb on - strand at 35.988 kb on - strand at 35.990 kb on + strand at 35.996 kb on + strand at 35.996 kb on + strand at 35.996 kb on + strand at 35.996 kb on + strand at 36.004 kb on - strand at 36.005 kb on - strand at 36.019 kb on - strand at 36.227 kb on - strand, within CSW01_00190 at 36.245 kb on + strand, within CSW01_00190 at 36.245 kb on + strand, within CSW01_00190 at 36.261 kb on - strand, within CSW01_00190 at 36.289 kb on - strand, within CSW01_00190 at 36.306 kb on - strand, within CSW01_00190 at 36.308 kb on - strand, within CSW01_00190 at 36.343 kb on - strand, within CSW01_00190 at 36.383 kb on - strand, within CSW01_00190 at 36.383 kb on - strand, within CSW01_00190 at 36.472 kb on + strand at 36.472 kb on + strand at 36.477 kb on + strand at 36.542 kb on - strand at 36.576 kb on + strand, within CSW01_00195 at 36.659 kb on - strand, within CSW01_00195 at 36.659 kb on - strand, within CSW01_00195 at 36.659 kb on - strand, within CSW01_00195 at 36.701 kb on + strand at 36.704 kb on - strand at 36.721 kb on - strand at 36.721 kb on - strand at 36.721 kb on - strand at 36.764 kb on + strand at 36.772 kb on - strand at 36.772 kb on - strand at 36.823 kb on + strand at 36.862 kb on - strand at 36.931 kb on + strand at 36.937 kb on + strand at 36.937 kb on + strand at 36.937 kb on + strand at 36.937 kb on + strand at 36.937 kb on + strand at 36.937 kb on + strand at 36.938 kb on + strand at 36.938 kb on + strand at 36.940 kb on - strand at 36.945 kb on - strand at 36.946 kb on - strand at 36.946 kb on - strand at 37.000 kb on - strand at 37.047 kb on - strand, within CSW01_00200 at 37.056 kb on + strand, within CSW01_00200 at 37.056 kb on + strand, within CSW01_00200 at 37.064 kb on - strand, within CSW01_00200 at 37.111 kb on - strand, within CSW01_00200 at 37.218 kb on + strand, within CSW01_00200 at 37.219 kb on + strand, within CSW01_00200 at 37.219 kb on + strand, within CSW01_00200 at 37.219 kb on + strand, within CSW01_00200 at 37.221 kb on - strand, within CSW01_00200 at 37.227 kb on - strand, within CSW01_00200 at 37.234 kb on - strand, within CSW01_00200 at 37.305 kb on + strand, within CSW01_00200 at 37.319 kb on - strand, within CSW01_00200 at 37.319 kb on - strand, within CSW01_00200 at 37.398 kb on + strand, within CSW01_00200 at 37.398 kb on - strand, within CSW01_00200 at 37.412 kb on + strand, within CSW01_00200
Per-strain Table
Position Strand Gene LocusTag Fraction ICP3_phage_411_MOI_rep2 remove 35,162 + CSW01_00180 0.60 -1.4 35,244 + CSW01_00180 0.65 -0.2 35,245 - CSW01_00180 0.66 +0.8 35,245 - CSW01_00180 0.66 +1.3 35,245 - CSW01_00180 0.66 -3.8 35,245 - CSW01_00180 0.66 -1.2 35,280 + CSW01_00180 0.68 -1.5 35,367 + CSW01_00180 0.74 -3.5 35,367 + CSW01_00180 0.74 +0.8 35,367 + CSW01_00180 0.74 -2.4 35,367 + CSW01_00180 0.74 -1.2 35,387 + CSW01_00180 0.76 -1.2 35,409 + CSW01_00180 0.77 -3.9 35,414 + CSW01_00180 0.77 -1.9 35,459 - CSW01_00180 0.81 +1.3 35,459 - CSW01_00180 0.81 -1.0 35,459 - CSW01_00180 0.81 +0.4 35,460 - CSW01_00180 0.81 -0.9 35,469 + CSW01_00180 0.81 -2.7 35,528 - CSW01_00180 0.85 -1.0 35,570 + CSW01_00180 0.88 +0.9 35,592 - CSW01_00180 0.90 -0.7 35,653 - -1.6 35,661 + -3.5 35,669 - -3.5 35,677 - -2.7 35,679 - -4.0 35,683 + -3.9 35,727 - +0.1 35,727 - -0.2 35,739 - -3.7 35,812 - -0.3 35,858 - -1.8 35,892 - -3.6 35,935 - -4.1 35,935 - -0.8 35,980 + +0.7 35,980 + +0.1 35,980 + +0.6 35,988 - +0.2 35,988 - +0.1 35,990 + -1.4 35,996 + -4.1 35,996 + -3.2 35,996 + -3.3 35,996 + +0.3 36,004 - -0.9 36,005 - -0.1 36,019 - -1.7 36,227 - CSW01_00190 0.28 -2.0 36,245 + CSW01_00190 0.35 -3.8 36,245 + CSW01_00190 0.35 -1.2 36,261 - CSW01_00190 0.41 -3.8 36,289 - CSW01_00190 0.51 +0.7 36,306 - CSW01_00190 0.58 -0.3 36,308 - CSW01_00190 0.58 -0.9 36,343 - CSW01_00190 0.72 -3.5 36,383 - CSW01_00190 0.87 -2.3 36,383 - CSW01_00190 0.87 -1.9 36,472 + +0.1 36,472 + -4.1 36,477 + -0.7 36,542 - -3.3 36,576 + CSW01_00195 0.29 -1.1 36,659 - CSW01_00195 0.79 +0.0 36,659 - CSW01_00195 0.79 -0.1 36,659 - CSW01_00195 0.79 +0.4 36,701 + +1.0 36,704 - -2.4 36,721 - +0.1 36,721 - +0.4 36,721 - +1.0 36,764 + +0.7 36,772 - -4.8 36,772 - -2.7 36,823 + -2.7 36,862 - -0.1 36,931 + +0.3 36,937 + -0.0 36,937 + -3.3 36,937 + -1.9 36,937 + +1.1 36,937 + -0.3 36,937 + +1.3 36,938 + -5.0 36,938 + +0.2 36,940 - -1.2 36,945 - +0.8 36,946 - +1.4 36,946 - +0.5 37,000 - -0.5 37,047 - CSW01_00200 0.14 +0.6 37,056 + CSW01_00200 0.15 -0.2 37,056 + CSW01_00200 0.15 -2.6 37,064 - CSW01_00200 0.16 -1.1 37,111 - CSW01_00200 0.22 +0.5 37,218 + CSW01_00200 0.34 +1.2 37,219 + CSW01_00200 0.35 -1.5 37,219 + CSW01_00200 0.35 +0.4 37,219 + CSW01_00200 0.35 +1.0 37,221 - CSW01_00200 0.35 +0.2 37,227 - CSW01_00200 0.35 -0.1 37,234 - CSW01_00200 0.36 -0.2 37,305 + CSW01_00200 0.45 -2.8 37,319 - CSW01_00200 0.46 -0.7 37,319 - CSW01_00200 0.46 -3.0 37,398 + CSW01_00200 0.56 -1.7 37,398 - CSW01_00200 0.56 +1.0 37,412 + CSW01_00200 0.57 +0.4
Or see this region's nucleotide sequence