Strain Fitness in Vibrio cholerae E7946 ATCC 55056 around CSW01_00165

Experiment: ICP3_phage_411_MOI_rep2

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	ICP3_phage_411_MOI_rep2
30,751	+		CSW01_00160	0.45	+1.5
30,751	+		CSW01_00160	0.45	-3.6
30,751	+		CSW01_00160	0.45	-2.7
30,751	+		CSW01_00160	0.45	+2.0
30,751	+		CSW01_00160	0.45	+1.1
30,751	+		CSW01_00160	0.45	-0.9
30,751	+		CSW01_00160	0.45	-2.0
30,751	+		CSW01_00160	0.45	-3.2
30,751	+		CSW01_00160	0.45	-0.4
30,759	-		CSW01_00160	0.45	+0.6
30,759	-		CSW01_00160	0.45	+0.8
30,759	-		CSW01_00160	0.45	-0.9
30,759	-		CSW01_00160	0.45	+0.1
30,759	-		CSW01_00160	0.45	+0.9
30,759	-		CSW01_00160	0.45	+0.4
30,759	-		CSW01_00160	0.45	+0.8
30,759	-		CSW01_00160	0.45	+1.9
30,759	-		CSW01_00160	0.45	-0.5
30,759	-		CSW01_00160	0.45	-0.9
30,759	-		CSW01_00160	0.45	+1.1
30,759	-		CSW01_00160	0.45	+0.8
30,759	-		CSW01_00160	0.45	+1.8
30,764	-		CSW01_00160	0.46	+0.2
30,820	+		CSW01_00160	0.49	-4.0
30,820	+		CSW01_00160	0.49	+1.5
30,820	+		CSW01_00160	0.49	+0.5
30,828	-		CSW01_00160	0.50	+1.2
30,830	+		CSW01_00160	0.50	+0.2
30,835	+		CSW01_00160	0.50	+0.8
30,911	+		CSW01_00160	0.55	-4.4
30,916	+		CSW01_00160	0.56	-1.5
31,067	-		CSW01_00160	0.65	+1.4
31,133	-		CSW01_00160	0.70	+0.6
31,134	+		CSW01_00160	0.70	+1.1
31,135	+		CSW01_00160	0.70	+0.4
31,179	-		CSW01_00160	0.73	-0.1
31,202	-		CSW01_00160	0.74	-1.4
31,243	-		CSW01_00160	0.77	+1.0
31,243	-		CSW01_00160	0.77	+2.0
31,243	-		CSW01_00160	0.77	-0.1
31,250	+		CSW01_00160	0.77	-2.4
31,298	+		CSW01_00160	0.81	+0.8
31,304	+		CSW01_00160	0.81	+0.5
31,306	-		CSW01_00160	0.81	+0.8
31,306	-		CSW01_00160	0.81	+1.0
31,306	-		CSW01_00160	0.81	-4.9
31,334	+		CSW01_00160	0.83	+1.1
31,348	-		CSW01_00160	0.84	+2.1
31,376	+		CSW01_00160	0.86	-0.6
31,376	+		CSW01_00160	0.86	+0.7
31,376	+		CSW01_00160	0.86	+1.4
31,376	+		CSW01_00160	0.86	-3.2
31,376	+		CSW01_00160	0.86	+0.6
31,384	-		CSW01_00160	0.86	+1.6
31,384	-		CSW01_00160	0.86	+0.7
31,384	-		CSW01_00160	0.86	-2.4
31,388	+		CSW01_00160	0.87	+0.5
31,463	+				-0.2
31,506	-				-0.0
31,506	-				+2.5
31,533	+				+0.6
31,579	-				-0.5
31,587	+				+1.3
31,593	-				+0.8
31,594	+				-2.2
31,594	+				+1.1
31,594	+				-3.0
31,594	+				-0.7
31,595	-				-3.7
31,595	-				-1.2
31,597	-				+0.8
31,602	-				+0.3
31,602	-				+0.1
31,602	-				-2.0
31,602	-				-2.7
31,607	-				+0.3
31,607	-				-1.4
31,617	-				+0.3
31,665	+				+0.8
31,665	+				-2.7
31,673	-				-0.2
31,705	-				-2.8
31,708	+				+1.4
31,712	-				+0.2
31,716	-				+0.6
31,779	-		CSW01_00165	0.11	-0.4
31,786	+		CSW01_00165	0.12	+1.2
31,786	+		CSW01_00165	0.12	-1.5
31,794	-		CSW01_00165	0.13	-5.7
31,805	+		CSW01_00165	0.14	-0.4
31,813	-		CSW01_00165	0.15	-2.0
31,847	-		CSW01_00165	0.19	-0.6
31,847	-		CSW01_00165	0.19	-3.9
31,858	+		CSW01_00165	0.20	-2.6
31,908	+		CSW01_00165	0.26	-0.9
31,916	-		CSW01_00165	0.26	-1.1
31,916	-		CSW01_00165	0.26	-1.2
31,925	-		CSW01_00165	0.27	-0.2
31,986	-		CSW01_00165	0.34	+1.9
32,007	-		CSW01_00165	0.37	-2.7
32,057	+		CSW01_00165	0.42	+0.9
32,075	-		CSW01_00165	0.44	+0.3
32,080	-		CSW01_00165	0.45	-0.4
32,117	-		CSW01_00165	0.49	-1.9
32,122	-		CSW01_00165	0.50	+2.8
32,186	+		CSW01_00165	0.57	-2.4
32,186	+		CSW01_00165	0.57	-1.4
32,186	+		CSW01_00165	0.57	-1.1
32,194	-		CSW01_00165	0.58	-1.9
32,206	-		CSW01_00165	0.59	+0.6
32,206	-		CSW01_00165	0.59	-3.2
32,206	-		CSW01_00165	0.59	-1.0
32,206	-		CSW01_00165	0.59	-0.2
32,222	+		CSW01_00165	0.61	+0.9
32,245	+		CSW01_00165	0.64	+0.8
32,286	-		CSW01_00165	0.68	+1.0
32,324	-		CSW01_00165	0.73	-2.0
32,348	+		CSW01_00165	0.75	+0.6
32,358	+		CSW01_00165	0.76	+1.3
32,375	-		CSW01_00165	0.78	+1.2
32,400	+		CSW01_00165	0.81	-0.2
32,400	+		CSW01_00165	0.81	-0.2
32,400	+		CSW01_00165	0.81	-0.9
32,400	+		CSW01_00165	0.81	-0.1
32,400	+		CSW01_00165	0.81	+0.6
32,400	+		CSW01_00165	0.81	+0.5
32,408	-		CSW01_00165	0.82	-0.4
32,408	-		CSW01_00165	0.82	+0.7
32,408	-		CSW01_00165	0.82	+0.2
32,408	-		CSW01_00165	0.82	-1.1
32,408	-		CSW01_00165	0.82	-3.4
32,408	-		CSW01_00165	0.82	+0.8
32,408	-		CSW01_00165	0.82	-0.5
32,417	+		CSW01_00165	0.83	+3.7
32,452	+		CSW01_00165	0.87	-0.6
32,480	-				-0.9
32,490	-				-0.4
32,509	+				-2.8
32,514	+				-3.5
32,514	+				-0.8
32,522	-				+0.8
32,531	+				-1.5
32,531	+				+0.9
32,532	-				-2.5
32,532	-				+1.7
32,592	-				-4.5
32,637	+				-0.8
32,702	+				-3.0
32,815	+		CSW01_00170	0.28	-4.9
32,894	+		CSW01_00170	0.41	-4.4
32,894	+		CSW01_00170	0.41	-1.7
32,894	+		CSW01_00170	0.41	-4.3
32,904	+		CSW01_00170	0.43	+0.7
32,906	+		CSW01_00170	0.43	-1.4
32,906	+		CSW01_00170	0.43	-4.1
32,906	+		CSW01_00170	0.43	-4.2
32,906	+		CSW01_00170	0.43	-2.8
32,906	+		CSW01_00170	0.43	-0.2
32,907	-		CSW01_00170	0.44	-2.0
32,914	-		CSW01_00170	0.45	-2.8
33,006	-		CSW01_00170	0.60	-1.6
33,078	+		CSW01_00170	0.72	-3.7
33,086	+		CSW01_00170	0.73	-2.8
33,086	+		CSW01_00170	0.73	-4.1
33,086	-		CSW01_00170	0.73	+0.1
33,086	-		CSW01_00170	0.73	+0.1
33,086	-		CSW01_00170	0.73	-4.4
33,094	-		CSW01_00170	0.75	-3.6
33,098	+		CSW01_00170	0.75	+0.5
33,145	-		CSW01_00170	0.83	-2.9
33,189	-				-2.7
33,196	+				+1.1
33,204	-				-2.0
33,211	+				+0.8
33,218	+				-1.5
33,218	+				-4.0
33,219	-				-4.1
33,269	+				-1.4
33,275	+				+0.2
33,317	+				-4.8
33,330	+				+0.6
33,330	-				+1.6
33,405	-		CSW01_00175	0.13	-0.0
33,433	+		CSW01_00175	0.16	+1.1
33,433	+		CSW01_00175	0.16	-4.0
33,433	+		CSW01_00175	0.16	+2.7
33,433	+		CSW01_00175	0.16	+0.7
33,488	-		CSW01_00175	0.21	+0.3
33,501	+		CSW01_00175	0.23	-3.0