Experiment: ICP3_phage_411_MOI_rep2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CSW01_00065 and CSW01_00070 are separated by 20 nucleotides CSW01_00070 and CSW01_00075 are separated by 355 nucleotides CSW01_00075 and CSW01_00080 are separated by 9 nucleotides
CSW01_00065: CSW01_00065 - DNA replication and repair protein RecF, at 9,991 to 11,082
_00065
CSW01_00070: CSW01_00070 - DNA gyrase subunit B, at 11,103 to 13,520
_00070
CSW01_00075: CSW01_00075 - transcription elongation factor GreAB, at 13,876 to 14,367
_00075
CSW01_00080: CSW01_00080 - hypothetical protein, at 14,377 to 14,493
_00080
Position (kb) 11
12
13
14 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2 at 10.184 kb on + strand, within CSW01_00065 at 10.184 kb on + strand, within CSW01_00065 at 10.184 kb on + strand, within CSW01_00065 at 10.192 kb on - strand, within CSW01_00065 at 10.277 kb on + strand, within CSW01_00065 at 10.285 kb on - strand, within CSW01_00065 at 10.287 kb on + strand, within CSW01_00065 at 10.295 kb on - strand, within CSW01_00065 at 10.343 kb on - strand, within CSW01_00065 at 10.366 kb on - strand, within CSW01_00065 at 10.367 kb on + strand, within CSW01_00065 at 10.367 kb on + strand, within CSW01_00065 at 10.375 kb on - strand, within CSW01_00065 at 10.380 kb on + strand, within CSW01_00065 at 10.396 kb on - strand, within CSW01_00065 at 10.414 kb on - strand, within CSW01_00065 at 10.433 kb on - strand, within CSW01_00065 at 10.433 kb on - strand, within CSW01_00065 at 10.433 kb on - strand, within CSW01_00065 at 10.433 kb on - strand, within CSW01_00065 at 10.433 kb on - strand, within CSW01_00065 at 10.475 kb on + strand, within CSW01_00065 at 10.485 kb on + strand, within CSW01_00065 at 10.493 kb on - strand, within CSW01_00065 at 10.493 kb on - strand, within CSW01_00065 at 10.493 kb on - strand, within CSW01_00065 at 10.493 kb on - strand, within CSW01_00065 at 10.497 kb on + strand, within CSW01_00065 at 10.497 kb on + strand, within CSW01_00065 at 10.505 kb on - strand, within CSW01_00065 at 10.505 kb on - strand, within CSW01_00065 at 10.512 kb on + strand, within CSW01_00065 at 10.612 kb on + strand, within CSW01_00065 at 10.628 kb on - strand, within CSW01_00065 at 10.737 kb on + strand, within CSW01_00065 at 10.737 kb on + strand, within CSW01_00065 at 10.738 kb on + strand, within CSW01_00065 at 10.822 kb on + strand, within CSW01_00065 at 10.866 kb on + strand, within CSW01_00065 at 10.983 kb on + strand at 11.007 kb on + strand at 11.024 kb on + strand at 11.063 kb on + strand at 11.078 kb on + strand at 11.094 kb on + strand at 13.627 kb on - strand at 13.688 kb on + strand at 13.892 kb on + strand at 14.055 kb on + strand, within CSW01_00075 at 14.096 kb on + strand, within CSW01_00075 at 14.096 kb on + strand, within CSW01_00075 at 14.096 kb on + strand, within CSW01_00075 at 14.104 kb on - strand, within CSW01_00075 at 14.104 kb on - strand, within CSW01_00075 at 14.108 kb on + strand, within CSW01_00075 at 14.110 kb on - strand, within CSW01_00075 at 14.114 kb on + strand, within CSW01_00075 at 14.120 kb on + strand, within CSW01_00075 at 14.166 kb on - strand, within CSW01_00075 at 14.166 kb on - strand, within CSW01_00075 at 14.188 kb on + strand, within CSW01_00075 at 14.188 kb on + strand, within CSW01_00075 at 14.188 kb on + strand, within CSW01_00075 at 14.188 kb on + strand, within CSW01_00075 at 14.188 kb on + strand, within CSW01_00075 at 14.188 kb on + strand, within CSW01_00075 at 14.188 kb on + strand, within CSW01_00075 at 14.196 kb on - strand, within CSW01_00075 at 14.196 kb on - strand, within CSW01_00075 at 14.196 kb on - strand, within CSW01_00075 at 14.196 kb on - strand, within CSW01_00075 at 14.196 kb on - strand, within CSW01_00075 at 14.197 kb on + strand, within CSW01_00075 at 14.225 kb on - strand, within CSW01_00075 at 14.225 kb on - strand, within CSW01_00075 at 14.254 kb on + strand, within CSW01_00075 at 14.254 kb on + strand, within CSW01_00075 at 14.254 kb on + strand, within CSW01_00075 at 14.254 kb on + strand, within CSW01_00075 at 14.254 kb on + strand, within CSW01_00075 at 14.289 kb on - strand, within CSW01_00075 at 14.312 kb on + strand, within CSW01_00075 at 14.317 kb on + strand, within CSW01_00075 at 14.330 kb on - strand at 14.451 kb on + strand, within CSW01_00080 at 14.456 kb on + strand, within CSW01_00080 at 14.457 kb on - strand, within CSW01_00080
Per-strain Table
Position Strand Gene LocusTag Fraction ICP3_phage_411_MOI_rep2 remove 10,184 + CSW01_00065 0.18 +0.5 10,184 + CSW01_00065 0.18 -1.9 10,184 + CSW01_00065 0.18 -4.3 10,192 - CSW01_00065 0.18 -4.3 10,277 + CSW01_00065 0.26 -0.2 10,285 - CSW01_00065 0.27 +0.6 10,287 + CSW01_00065 0.27 -3.2 10,295 - CSW01_00065 0.28 -2.0 10,343 - CSW01_00065 0.32 +0.4 10,366 - CSW01_00065 0.34 -3.5 10,367 + CSW01_00065 0.34 -4.2 10,367 + CSW01_00065 0.34 +2.1 10,375 - CSW01_00065 0.35 -4.6 10,380 + CSW01_00065 0.36 -3.3 10,396 - CSW01_00065 0.37 -1.7 10,414 - CSW01_00065 0.39 -1.6 10,433 - CSW01_00065 0.40 -2.5 10,433 - CSW01_00065 0.40 -0.6 10,433 - CSW01_00065 0.40 -2.9 10,433 - CSW01_00065 0.40 -1.2 10,433 - CSW01_00065 0.40 -2.9 10,475 + CSW01_00065 0.44 +2.4 10,485 + CSW01_00065 0.45 +0.0 10,493 - CSW01_00065 0.46 -4.6 10,493 - CSW01_00065 0.46 -1.9 10,493 - CSW01_00065 0.46 -0.6 10,493 - CSW01_00065 0.46 -3.0 10,497 + CSW01_00065 0.46 +0.4 10,497 + CSW01_00065 0.46 -2.6 10,505 - CSW01_00065 0.47 +1.4 10,505 - CSW01_00065 0.47 -2.2 10,512 + CSW01_00065 0.48 -1.6 10,612 + CSW01_00065 0.57 -1.9 10,628 - CSW01_00065 0.58 -1.3 10,737 + CSW01_00065 0.68 -2.2 10,737 + CSW01_00065 0.68 -3.8 10,738 + CSW01_00065 0.68 -2.2 10,822 + CSW01_00065 0.76 -2.5 10,866 + CSW01_00065 0.80 +0.2 10,983 + -0.8 11,007 + +0.1 11,024 + +1.1 11,063 + -1.6 11,078 + -0.6 11,094 + -3.5 13,627 - -0.5 13,688 + +1.5 13,892 + +1.2 14,055 + CSW01_00075 0.36 +0.0 14,096 + CSW01_00075 0.45 +1.5 14,096 + CSW01_00075 0.45 +2.4 14,096 + CSW01_00075 0.45 -1.6 14,104 - CSW01_00075 0.46 +0.7 14,104 - CSW01_00075 0.46 -1.1 14,108 + CSW01_00075 0.47 +1.0 14,110 - CSW01_00075 0.48 -3.9 14,114 + CSW01_00075 0.48 -0.2 14,120 + CSW01_00075 0.50 +1.9 14,166 - CSW01_00075 0.59 -1.3 14,166 - CSW01_00075 0.59 +0.6 14,188 + CSW01_00075 0.63 +0.4 14,188 + CSW01_00075 0.63 -4.4 14,188 + CSW01_00075 0.63 -3.8 14,188 + CSW01_00075 0.63 +0.5 14,188 + CSW01_00075 0.63 -0.2 14,188 + CSW01_00075 0.63 +1.6 14,188 + CSW01_00075 0.63 -0.3 14,196 - CSW01_00075 0.65 -4.1 14,196 - CSW01_00075 0.65 -0.9 14,196 - CSW01_00075 0.65 -0.2 14,196 - CSW01_00075 0.65 +0.3 14,196 - CSW01_00075 0.65 +2.2 14,197 + CSW01_00075 0.65 +0.5 14,225 - CSW01_00075 0.71 -0.6 14,225 - CSW01_00075 0.71 +1.8 14,254 + CSW01_00075 0.77 +1.0 14,254 + CSW01_00075 0.77 -0.1 14,254 + CSW01_00075 0.77 +1.3 14,254 + CSW01_00075 0.77 -2.9 14,254 + CSW01_00075 0.77 +0.4 14,289 - CSW01_00075 0.84 -1.7 14,312 + CSW01_00075 0.89 -0.9 14,317 + CSW01_00075 0.90 -3.9 14,330 - +1.2 14,451 + CSW01_00080 0.63 -0.9 14,456 + CSW01_00080 0.68 +0.7 14,457 - CSW01_00080 0.68 +0.0
Or see this region's nucleotide sequence