Strain Fitness in Acidovorax sp. GW101-3H11 around Ac3H11_3445

Experiment: L-Leucine (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAc3H11_3444 and Ac3H11_3445 are separated by 303 nucleotidesAc3H11_3445 and Ac3H11_3446 are separated by 146 nucleotides Ac3H11_3444 - Ribonuclease BN (EC 3.1.-.-), at 126,497 to 127,495 _3444 Ac3H11_3445 - 3-oxoacyl-[acyl-carrier protein] reductase (EC 1.1.1.100), at 127,799 to 128,572 _3445 Ac3H11_3446 - Long-chain-fatty-acid--CoA ligase (EC 6.2.1.3), at 128,719 to 130,410 _3446 Position (kb) 127 128 129Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 126.999 kb on + strand, within Ac3H11_3444at 126.999 kb on + strand, within Ac3H11_3444at 126.999 kb on + strand, within Ac3H11_3444at 126.999 kb on + strand, within Ac3H11_3444at 126.999 kb on + strand, within Ac3H11_3444at 126.999 kb on + strand, within Ac3H11_3444at 127.000 kb on - strand, within Ac3H11_3444at 127.000 kb on - strand, within Ac3H11_3444at 127.000 kb on - strand, within Ac3H11_3444at 127.000 kb on - strand, within Ac3H11_3444at 127.000 kb on - strand, within Ac3H11_3444at 127.000 kb on - strand, within Ac3H11_3444at 127.000 kb on - strand, within Ac3H11_3444at 127.000 kb on - strand, within Ac3H11_3444at 127.000 kb on - strand, within Ac3H11_3444at 127.063 kb on - strand, within Ac3H11_3444at 127.063 kb on - strand, within Ac3H11_3444at 127.063 kb on - strand, within Ac3H11_3444at 127.270 kb on - strand, within Ac3H11_3444at 127.270 kb on - strand, within Ac3H11_3444at 127.342 kb on - strand, within Ac3H11_3444at 127.507 kb on + strandat 127.507 kb on + strandat 127.508 kb on - strandat 127.624 kb on - strandat 127.644 kb on + strandat 127.644 kb on + strandat 127.644 kb on + strandat 127.645 kb on - strandat 127.645 kb on - strandat 127.645 kb on - strandat 127.645 kb on - strandat 127.645 kb on - strandat 128.117 kb on + strand, within Ac3H11_3445at 128.288 kb on + strand, within Ac3H11_3445at 128.288 kb on + strand, within Ac3H11_3445at 128.288 kb on + strand, within Ac3H11_3445at 128.289 kb on - strand, within Ac3H11_3445at 128.289 kb on - strand, within Ac3H11_3445at 128.289 kb on - strand, within Ac3H11_3445at 128.289 kb on - strand, within Ac3H11_3445at 128.351 kb on + strand, within Ac3H11_3445at 128.352 kb on - strand, within Ac3H11_3445at 128.848 kb on + strandat 128.849 kb on - strandat 128.849 kb on - strandat 128.953 kb on + strand, within Ac3H11_3446at 128.953 kb on + strand, within Ac3H11_3446at 128.953 kb on + strand, within Ac3H11_3446at 128.954 kb on - strand, within Ac3H11_3446at 128.954 kb on - strand, within Ac3H11_3446at 128.954 kb on - strand, within Ac3H11_3446at 128.954 kb on - strand, within Ac3H11_3446at 129.061 kb on + strand, within Ac3H11_3446at 129.061 kb on + strand, within Ac3H11_3446at 129.061 kb on + strand, within Ac3H11_3446at 129.061 kb on + strand, within Ac3H11_3446at 129.061 kb on + strand, within Ac3H11_3446at 129.062 kb on - strand, within Ac3H11_3446at 129.062 kb on - strand, within Ac3H11_3446at 129.062 kb on - strand, within Ac3H11_3446at 129.181 kb on + strand, within Ac3H11_3446at 129.181 kb on + strand, within Ac3H11_3446at 129.182 kb on - strand, within Ac3H11_3446at 129.182 kb on - strand, within Ac3H11_3446at 129.190 kb on + strand, within Ac3H11_3446at 129.191 kb on - strand, within Ac3H11_3446at 129.191 kb on - strand, within Ac3H11_3446at 129.316 kb on - strand, within Ac3H11_3446at 129.350 kb on - strand, within Ac3H11_3446at 129.461 kb on - strand, within Ac3H11_3446

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Leucine (N)
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126,999 + Ac3H11_3444 0.50 -0.2
126,999 + Ac3H11_3444 0.50 -0.3
126,999 + Ac3H11_3444 0.50 -0.6
126,999 + Ac3H11_3444 0.50 -1.3
126,999 + Ac3H11_3444 0.50 +0.5
126,999 + Ac3H11_3444 0.50 +0.0
127,000 - Ac3H11_3444 0.50 +0.8
127,000 - Ac3H11_3444 0.50 +0.4
127,000 - Ac3H11_3444 0.50 +0.6
127,000 - Ac3H11_3444 0.50 -0.3
127,000 - Ac3H11_3444 0.50 +2.0
127,000 - Ac3H11_3444 0.50 -0.6
127,000 - Ac3H11_3444 0.50 +0.3
127,000 - Ac3H11_3444 0.50 -1.3
127,000 - Ac3H11_3444 0.50 +0.2
127,063 - Ac3H11_3444 0.57 +0.6
127,063 - Ac3H11_3444 0.57 +0.5
127,063 - Ac3H11_3444 0.57 -0.0
127,270 - Ac3H11_3444 0.77 -0.7
127,270 - Ac3H11_3444 0.77 +0.0
127,342 - Ac3H11_3444 0.85 +1.5
127,507 + +1.5
127,507 + -1.0
127,508 - +0.2
127,624 - +0.9
127,644 + +0.4
127,644 + +0.7
127,644 + +2.5
127,645 - -0.0
127,645 - -0.1
127,645 - +0.6
127,645 - -0.3
127,645 - +2.3
128,117 + Ac3H11_3445 0.41 -0.5
128,288 + Ac3H11_3445 0.63 +0.3
128,288 + Ac3H11_3445 0.63 +1.1
128,288 + Ac3H11_3445 0.63 +1.4
128,289 - Ac3H11_3445 0.63 +1.5
128,289 - Ac3H11_3445 0.63 +0.6
128,289 - Ac3H11_3445 0.63 +1.4
128,289 - Ac3H11_3445 0.63 +0.7
128,351 + Ac3H11_3445 0.71 +0.1
128,352 - Ac3H11_3445 0.71 +0.5
128,848 + +0.3
128,849 - -0.3
128,849 - -0.6
128,953 + Ac3H11_3446 0.14 -0.4
128,953 + Ac3H11_3446 0.14 -0.7
128,953 + Ac3H11_3446 0.14 -0.9
128,954 - Ac3H11_3446 0.14 +0.4
128,954 - Ac3H11_3446 0.14 +0.4
128,954 - Ac3H11_3446 0.14 -2.8
128,954 - Ac3H11_3446 0.14 +2.5
129,061 + Ac3H11_3446 0.20 -1.2
129,061 + Ac3H11_3446 0.20 -0.9
129,061 + Ac3H11_3446 0.20 +0.1
129,061 + Ac3H11_3446 0.20 +0.9
129,061 + Ac3H11_3446 0.20 +0.6
129,062 - Ac3H11_3446 0.20 -0.4
129,062 - Ac3H11_3446 0.20 +1.1
129,062 - Ac3H11_3446 0.20 -0.1
129,181 + Ac3H11_3446 0.27 -2.1
129,181 + Ac3H11_3446 0.27 -0.3
129,182 - Ac3H11_3446 0.27 +0.3
129,182 - Ac3H11_3446 0.27 -1.3
129,190 + Ac3H11_3446 0.28 -0.7
129,191 - Ac3H11_3446 0.28 -1.0
129,191 - Ac3H11_3446 0.28 -0.1
129,316 - Ac3H11_3446 0.35 -1.1
129,350 - Ac3H11_3446 0.37 +0.8
129,461 - Ac3H11_3446 0.44 -1.3

Or see this region's nucleotide sequence