Strain Fitness in Acidovorax sp. GW101-3H11 around Ac3H11_3046

Experiment: L-Leucine (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAc3H11_3044 and Ac3H11_3045 overlap by 4 nucleotidesAc3H11_3045 and Ac3H11_3046 overlap by 1 nucleotidesAc3H11_3046 and Ac3H11_3047 are separated by 59 nucleotidesAc3H11_3047 and Ac3H11_3048 overlap by 4 nucleotides Ac3H11_3044 - RNA binding methyltransferase FtsJ like, at 71,122 to 72,120 _3044 Ac3H11_3045 - 5,10-methylenetetrahydrofolate reductase (EC 1.5.1.20), at 72,117 to 72,968 _3045 Ac3H11_3046 - Rare lipoprotein A precursor, at 72,968 to 73,540 _3046 Ac3H11_3047 - Protein involved in catabolism of external DNA, at 73,600 to 74,424 _3047 Ac3H11_3048 - hypothetical protein, at 74,421 to 74,819 _3048 Position (kb) 72 73 74Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 71.986 kb on + strand, within Ac3H11_3044at 71.986 kb on + strand, within Ac3H11_3044at 71.986 kb on + strand, within Ac3H11_3044at 71.986 kb on + strand, within Ac3H11_3044at 71.986 kb on + strand, within Ac3H11_3044at 71.986 kb on + strand, within Ac3H11_3044at 71.986 kb on + strand, within Ac3H11_3044at 71.986 kb on + strand, within Ac3H11_3044at 71.987 kb on - strand, within Ac3H11_3044at 71.987 kb on - strand, within Ac3H11_3044at 71.987 kb on - strand, within Ac3H11_3044at 71.987 kb on - strand, within Ac3H11_3044at 71.987 kb on - strand, within Ac3H11_3044at 71.987 kb on - strand, within Ac3H11_3044at 71.987 kb on - strand, within Ac3H11_3044at 72.209 kb on - strand, within Ac3H11_3045at 72.225 kb on + strand, within Ac3H11_3045at 72.225 kb on + strand, within Ac3H11_3045at 72.225 kb on + strand, within Ac3H11_3045at 72.225 kb on + strandat 72.225 kb on + strand, within Ac3H11_3045at 72.225 kb on + strand, within Ac3H11_3045at 72.225 kb on + strand, within Ac3H11_3045at 72.225 kb on + strand, within Ac3H11_3045at 72.225 kb on + strand, within Ac3H11_3045at 72.225 kb on + strand, within Ac3H11_3045at 72.225 kb on + strand, within Ac3H11_3045at 72.225 kb on + strand, within Ac3H11_3045at 72.225 kb on + strand, within Ac3H11_3045at 72.225 kb on + strand, within Ac3H11_3045at 72.225 kb on + strand, within Ac3H11_3045at 72.225 kb on + strand, within Ac3H11_3045at 72.226 kb on - strand, within Ac3H11_3045at 72.226 kb on - strand, within Ac3H11_3045at 72.226 kb on - strand, within Ac3H11_3045at 72.226 kb on - strand, within Ac3H11_3045at 72.226 kb on - strand, within Ac3H11_3045at 72.226 kb on - strand, within Ac3H11_3045at 72.226 kb on - strand, within Ac3H11_3045at 72.226 kb on - strand, within Ac3H11_3045at 72.226 kb on - strand, within Ac3H11_3045at 72.226 kb on - strand, within Ac3H11_3045at 72.226 kb on - strand, within Ac3H11_3045at 72.226 kb on - strand, within Ac3H11_3045at 72.226 kb on - strand, within Ac3H11_3045at 72.226 kb on - strand, within Ac3H11_3045at 72.226 kb on - strand, within Ac3H11_3045at 72.226 kb on - strand, within Ac3H11_3045at 72.226 kb on - strand, within Ac3H11_3045at 72.226 kb on - strand, within Ac3H11_3045at 72.226 kb on - strand, within Ac3H11_3045at 72.226 kb on - strand, within Ac3H11_3045at 72.226 kb on - strand, within Ac3H11_3045at 72.226 kb on - strand, within Ac3H11_3045at 72.226 kb on - strand, within Ac3H11_3045at 72.258 kb on + strand, within Ac3H11_3045at 72.258 kb on + strand, within Ac3H11_3045at 72.258 kb on + strand, within Ac3H11_3045at 72.258 kb on + strand, within Ac3H11_3045at 72.258 kb on + strand, within Ac3H11_3045at 72.258 kb on + strand, within Ac3H11_3045at 72.258 kb on + strand, within Ac3H11_3045at 72.258 kb on + strand, within Ac3H11_3045at 72.258 kb on + strand, within Ac3H11_3045at 72.258 kb on + strand, within Ac3H11_3045at 72.259 kb on - strand, within Ac3H11_3045at 72.259 kb on - strand, within Ac3H11_3045at 72.259 kb on - strand, within Ac3H11_3045at 72.543 kb on + strand, within Ac3H11_3045at 72.544 kb on - strand, within Ac3H11_3045at 72.594 kb on + strand, within Ac3H11_3045at 72.594 kb on + strand, within Ac3H11_3045at 72.594 kb on + strand, within Ac3H11_3045at 72.594 kb on + strand, within Ac3H11_3045at 72.594 kb on + strand, within Ac3H11_3045at 72.594 kb on + strand, within Ac3H11_3045at 72.594 kb on + strand, within Ac3H11_3045at 72.594 kb on + strand, within Ac3H11_3045at 72.594 kb on + strand, within Ac3H11_3045at 72.594 kb on + strand, within Ac3H11_3045at 72.595 kb on - strand, within Ac3H11_3045at 72.595 kb on - strand, within Ac3H11_3045at 72.595 kb on - strand, within Ac3H11_3045at 72.595 kb on - strand, within Ac3H11_3045at 72.595 kb on - strand, within Ac3H11_3045at 72.595 kb on - strand, within Ac3H11_3045at 72.595 kb on - strand, within Ac3H11_3045at 72.595 kb on - strand, within Ac3H11_3045at 72.595 kb on - strand, within Ac3H11_3045at 72.640 kb on - strand, within Ac3H11_3045at 72.640 kb on - strand, within Ac3H11_3045at 72.645 kb on + strand, within Ac3H11_3045at 72.645 kb on + strand, within Ac3H11_3045at 72.645 kb on + strand, within Ac3H11_3045at 72.646 kb on - strand, within Ac3H11_3045at 72.646 kb on - strand, within Ac3H11_3045at 72.646 kb on - strand, within Ac3H11_3045at 72.646 kb on - strand, within Ac3H11_3045at 72.912 kb on + strandat 72.912 kb on + strandat 72.912 kb on + strandat 72.912 kb on + strandat 72.912 kb on + strandat 72.912 kb on + strandat 72.912 kb on + strandat 72.912 kb on + strandat 72.913 kb on - strandat 72.913 kb on - strandat 72.913 kb on - strandat 72.913 kb on - strandat 72.913 kb on - strandat 72.913 kb on - strandat 72.913 kb on - strandat 72.913 kb on - strandat 73.550 kb on + strandat 73.551 kb on - strandat 73.697 kb on + strand, within Ac3H11_3047at 73.697 kb on + strand, within Ac3H11_3047at 73.698 kb on - strand, within Ac3H11_3047at 73.898 kb on + strand, within Ac3H11_3047at 73.899 kb on - strand, within Ac3H11_3047at 73.899 kb on - strand, within Ac3H11_3047at 73.899 kb on - strand, within Ac3H11_3047at 73.899 kb on - strand, within Ac3H11_3047at 73.899 kb on - strand, within Ac3H11_3047at 73.899 kb on - strand, within Ac3H11_3047at 73.899 kb on - strand, within Ac3H11_3047at 73.956 kb on - strand, within Ac3H11_3047at 74.205 kb on + strand, within Ac3H11_3047at 74.205 kb on + strand, within Ac3H11_3047at 74.205 kb on + strand, within Ac3H11_3047at 74.205 kb on + strand, within Ac3H11_3047at 74.240 kb on + strand, within Ac3H11_3047at 74.240 kb on + strand, within Ac3H11_3047at 74.240 kb on + strand, within Ac3H11_3047at 74.240 kb on + strand, within Ac3H11_3047at 74.240 kb on + strand, within Ac3H11_3047at 74.240 kb on + strand, within Ac3H11_3047at 74.240 kb on + strand, within Ac3H11_3047at 74.240 kb on + strand, within Ac3H11_3047at 74.240 kb on + strand, within Ac3H11_3047at 74.240 kb on + strand, within Ac3H11_3047at 74.240 kb on + strand, within Ac3H11_3047at 74.240 kb on + strand, within Ac3H11_3047at 74.240 kb on + strand, within Ac3H11_3047at 74.240 kb on + strand, within Ac3H11_3047at 74.240 kb on + strand, within Ac3H11_3047at 74.241 kb on - strand, within Ac3H11_3047at 74.241 kb on - strand, within Ac3H11_3047at 74.241 kb on - strand, within Ac3H11_3047at 74.241 kb on - strand, within Ac3H11_3047at 74.241 kb on - strand, within Ac3H11_3047at 74.241 kb on - strand, within Ac3H11_3047at 74.241 kb on - strand, within Ac3H11_3047at 74.241 kb on - strand, within Ac3H11_3047at 74.241 kb on - strand, within Ac3H11_3047at 74.241 kb on - strand, within Ac3H11_3047at 74.241 kb on - strand, within Ac3H11_3047at 74.241 kb on - strand, within Ac3H11_3047at 74.241 kb on - strand, within Ac3H11_3047at 74.241 kb on - strand, within Ac3H11_3047at 74.241 kb on - strand, within Ac3H11_3047at 74.241 kb on - strand, within Ac3H11_3047at 74.241 kb on - strand, within Ac3H11_3047at 74.241 kb on - strand, within Ac3H11_3047at 74.241 kb on - strand, within Ac3H11_3047at 74.241 kb on - strand, within Ac3H11_3047at 74.241 kb on - strand, within Ac3H11_3047at 74.327 kb on + strand, within Ac3H11_3047at 74.328 kb on - strand, within Ac3H11_3047at 74.328 kb on - strand, within Ac3H11_3047at 74.328 kb on - strand, within Ac3H11_3047at 74.328 kb on - strand, within Ac3H11_3047at 74.478 kb on - strand, within Ac3H11_3048at 74.478 kb on - strand, within Ac3H11_3048at 74.499 kb on - strand, within Ac3H11_3048

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Leucine (N)
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71,986 + Ac3H11_3044 0.86 +0.7
71,986 + Ac3H11_3044 0.86 -1.9
71,986 + Ac3H11_3044 0.86 +1.1
71,986 + Ac3H11_3044 0.86 -0.4
71,986 + Ac3H11_3044 0.86 +0.4
71,986 + Ac3H11_3044 0.86 -0.2
71,986 + Ac3H11_3044 0.86 +0.8
71,986 + Ac3H11_3044 0.86 +0.1
71,987 - Ac3H11_3044 0.87 -1.9
71,987 - Ac3H11_3044 0.87 -1.4
71,987 - Ac3H11_3044 0.87 -4.0
71,987 - Ac3H11_3044 0.87 -2.3
71,987 - Ac3H11_3044 0.87 -2.5
71,987 - Ac3H11_3044 0.87 -2.4
71,987 - Ac3H11_3044 0.87 -1.7
72,209 - Ac3H11_3045 0.11 -2.3
72,225 + Ac3H11_3045 0.13 -3.7
72,225 + Ac3H11_3045 0.13 -3.3
72,225 + Ac3H11_3045 0.13 -2.3
72,225 + +1.4
72,225 + Ac3H11_3045 0.13 -2.7
72,225 + Ac3H11_3045 0.13 -3.4
72,225 + Ac3H11_3045 0.13 -2.7
72,225 + Ac3H11_3045 0.13 -0.8
72,225 + Ac3H11_3045 0.13 -1.1
72,225 + Ac3H11_3045 0.13 -3.3
72,225 + Ac3H11_3045 0.13 -3.4
72,225 + Ac3H11_3045 0.13 -3.7
72,225 + Ac3H11_3045 0.13 -3.3
72,225 + Ac3H11_3045 0.13 -4.7
72,225 + Ac3H11_3045 0.13 -4.2
72,225 + Ac3H11_3045 0.13 -2.3
72,226 - Ac3H11_3045 0.13 -1.4
72,226 - Ac3H11_3045 0.13 -3.4
72,226 - Ac3H11_3045 0.13 -1.1
72,226 - Ac3H11_3045 0.13 -3.9
72,226 - Ac3H11_3045 0.13 -2.7
72,226 - Ac3H11_3045 0.13 -3.4
72,226 - Ac3H11_3045 0.13 -2.3
72,226 - Ac3H11_3045 0.13 -2.3
72,226 - Ac3H11_3045 0.13 -2.9
72,226 - Ac3H11_3045 0.13 -3.1
72,226 - Ac3H11_3045 0.13 -2.3
72,226 - Ac3H11_3045 0.13 -3.3
72,226 - Ac3H11_3045 0.13 -1.4
72,226 - Ac3H11_3045 0.13 -3.1
72,226 - Ac3H11_3045 0.13 -3.7
72,226 - Ac3H11_3045 0.13 -4.3
72,226 - Ac3H11_3045 0.13 -3.2
72,226 - Ac3H11_3045 0.13 -2.3
72,226 - Ac3H11_3045 0.13 -3.7
72,226 - Ac3H11_3045 0.13 -1.5
72,226 - Ac3H11_3045 0.13 -3.7
72,226 - Ac3H11_3045 0.13 -2.8
72,226 - Ac3H11_3045 0.13 -2.0
72,258 + Ac3H11_3045 0.17 -0.8
72,258 + Ac3H11_3045 0.17 -1.9
72,258 + Ac3H11_3045 0.17 -2.5
72,258 + Ac3H11_3045 0.17 -1.7
72,258 + Ac3H11_3045 0.17 -3.2
72,258 + Ac3H11_3045 0.17 -0.2
72,258 + Ac3H11_3045 0.17 -1.2
72,258 + Ac3H11_3045 0.17 -3.8
72,258 + Ac3H11_3045 0.17 -3.3
72,258 + Ac3H11_3045 0.17 -3.3
72,259 - Ac3H11_3045 0.17 -2.8
72,259 - Ac3H11_3045 0.17 -1.7
72,259 - Ac3H11_3045 0.17 -1.1
72,543 + Ac3H11_3045 0.50 -3.0
72,544 - Ac3H11_3045 0.50 -3.9
72,594 + Ac3H11_3045 0.56 -3.2
72,594 + Ac3H11_3045 0.56 -2.2
72,594 + Ac3H11_3045 0.56 -3.5
72,594 + Ac3H11_3045 0.56 -2.6
72,594 + Ac3H11_3045 0.56 -3.3
72,594 + Ac3H11_3045 0.56 -4.0
72,594 + Ac3H11_3045 0.56 -2.8
72,594 + Ac3H11_3045 0.56 +0.4
72,594 + Ac3H11_3045 0.56 -3.7
72,594 + Ac3H11_3045 0.56 -4.5
72,595 - Ac3H11_3045 0.56 -3.2
72,595 - Ac3H11_3045 0.56 -1.5
72,595 - Ac3H11_3045 0.56 -3.5
72,595 - Ac3H11_3045 0.56 -4.2
72,595 - Ac3H11_3045 0.56 -3.5
72,595 - Ac3H11_3045 0.56 -1.8
72,595 - Ac3H11_3045 0.56 -4.0
72,595 - Ac3H11_3045 0.56 -3.0
72,595 - Ac3H11_3045 0.56 -2.7
72,640 - Ac3H11_3045 0.61 -2.7
72,640 - Ac3H11_3045 0.61 -1.1
72,645 + Ac3H11_3045 0.62 -2.7
72,645 + Ac3H11_3045 0.62 -3.7
72,645 + Ac3H11_3045 0.62 -3.3
72,646 - Ac3H11_3045 0.62 -0.8
72,646 - Ac3H11_3045 0.62 -3.7
72,646 - Ac3H11_3045 0.62 -3.1
72,646 - Ac3H11_3045 0.62 -3.7
72,912 + -3.8
72,912 + -3.6
72,912 + -4.3
72,912 + -0.6
72,912 + -3.4
72,912 + -3.1
72,912 + +0.5
72,912 + -1.9
72,913 - -3.8
72,913 - -3.3
72,913 - -2.6
72,913 - -2.9
72,913 - -2.8
72,913 - -3.8
72,913 - -2.2
72,913 - -4.3
73,550 + -2.1
73,551 - -0.4
73,697 + Ac3H11_3047 0.12 +1.2
73,697 + Ac3H11_3047 0.12 -2.5
73,698 - Ac3H11_3047 0.12 +0.9
73,898 + Ac3H11_3047 0.36 -0.8
73,899 - Ac3H11_3047 0.36 +0.2
73,899 - Ac3H11_3047 0.36 +0.6
73,899 - Ac3H11_3047 0.36 +0.7
73,899 - Ac3H11_3047 0.36 +1.8
73,899 - Ac3H11_3047 0.36 -1.6
73,899 - Ac3H11_3047 0.36 -0.1
73,899 - Ac3H11_3047 0.36 +0.5
73,956 - Ac3H11_3047 0.43 -0.5
74,205 + Ac3H11_3047 0.73 +0.2
74,205 + Ac3H11_3047 0.73 +0.5
74,205 + Ac3H11_3047 0.73 +0.7
74,205 + Ac3H11_3047 0.73 -0.2
74,240 + Ac3H11_3047 0.78 -0.7
74,240 + Ac3H11_3047 0.78 -0.1
74,240 + Ac3H11_3047 0.78 -0.1
74,240 + Ac3H11_3047 0.78 -0.2
74,240 + Ac3H11_3047 0.78 +1.0
74,240 + Ac3H11_3047 0.78 -1.5
74,240 + Ac3H11_3047 0.78 -0.0
74,240 + Ac3H11_3047 0.78 -0.9
74,240 + Ac3H11_3047 0.78 +0.2
74,240 + Ac3H11_3047 0.78 -0.1
74,240 + Ac3H11_3047 0.78 +0.3
74,240 + Ac3H11_3047 0.78 -0.6
74,240 + Ac3H11_3047 0.78 -0.0
74,240 + Ac3H11_3047 0.78 -1.3
74,240 + Ac3H11_3047 0.78 -0.2
74,241 - Ac3H11_3047 0.78 +0.2
74,241 - Ac3H11_3047 0.78 -2.0
74,241 - Ac3H11_3047 0.78 -0.7
74,241 - Ac3H11_3047 0.78 -1.3
74,241 - Ac3H11_3047 0.78 -1.8
74,241 - Ac3H11_3047 0.78 -0.4
74,241 - Ac3H11_3047 0.78 +1.0
74,241 - Ac3H11_3047 0.78 -0.7
74,241 - Ac3H11_3047 0.78 +0.5
74,241 - Ac3H11_3047 0.78 -0.3
74,241 - Ac3H11_3047 0.78 -2.2
74,241 - Ac3H11_3047 0.78 -0.4
74,241 - Ac3H11_3047 0.78 -0.2
74,241 - Ac3H11_3047 0.78 +0.4
74,241 - Ac3H11_3047 0.78 +0.6
74,241 - Ac3H11_3047 0.78 -0.2
74,241 - Ac3H11_3047 0.78 -0.1
74,241 - Ac3H11_3047 0.78 +1.1
74,241 - Ac3H11_3047 0.78 +0.6
74,241 - Ac3H11_3047 0.78 +0.2
74,241 - Ac3H11_3047 0.78 +1.6
74,327 + Ac3H11_3047 0.88 -1.7
74,328 - Ac3H11_3047 0.88 -1.4
74,328 - Ac3H11_3047 0.88 +0.7
74,328 - Ac3H11_3047 0.88 -1.8
74,328 - Ac3H11_3047 0.88 -1.1
74,478 - Ac3H11_3048 0.14 +0.1
74,478 - Ac3H11_3048 0.14 +0.5
74,499 - Ac3H11_3048 0.20 +0.3

Or see this region's nucleotide sequence