Strain Fitness in Acidovorax sp. GW101-3H11 around Ac3H11_2631

Experiment: L-Leucine (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAc3H11_2630 and Ac3H11_2631 are separated by 149 nucleotidesAc3H11_2631 and Ac3H11_2632 overlap by 1 nucleotidesAc3H11_2632 and Ac3H11_2633 overlap by 17 nucleotides Ac3H11_2630 - Alpha/beta hydrolase fold, at 912,815 to 913,723 _2630 Ac3H11_2631 - Peptide chain release factor 2; programmed frameshift-containing, at 913,873 to 915,030 _2631 Ac3H11_2632 - Beta-phosphoglucomutase (EC 5.4.2.6), at 915,030 to 915,704 _2632 Ac3H11_2633 - Membrane alanine aminopeptidase N (EC 3.4.11.2), at 915,688 to 918,444 _2633 Position (kb) 913 914 915 916Strain fitness (log2 ratio) -2 -1 0 1at 912.873 kb on - strandat 912.873 kb on - strandat 912.873 kb on - strandat 912.957 kb on - strand, within Ac3H11_2630at 912.957 kb on - strand, within Ac3H11_2630at 913.052 kb on + strand, within Ac3H11_2630at 913.052 kb on + strand, within Ac3H11_2630at 913.052 kb on + strand, within Ac3H11_2630at 913.052 kb on + strand, within Ac3H11_2630at 913.052 kb on + strand, within Ac3H11_2630at 913.053 kb on - strand, within Ac3H11_2630at 913.053 kb on - strand, within Ac3H11_2630at 913.053 kb on - strand, within Ac3H11_2630at 913.053 kb on - strand, within Ac3H11_2630at 913.053 kb on - strand, within Ac3H11_2630at 913.053 kb on - strand, within Ac3H11_2630at 913.053 kb on - strand, within Ac3H11_2630at 913.068 kb on - strand, within Ac3H11_2630at 913.100 kb on + strand, within Ac3H11_2630at 913.100 kb on + strand, within Ac3H11_2630at 913.100 kb on + strand, within Ac3H11_2630at 913.100 kb on + strand, within Ac3H11_2630at 913.100 kb on + strand, within Ac3H11_2630at 913.101 kb on - strand, within Ac3H11_2630at 913.163 kb on + strand, within Ac3H11_2630at 913.163 kb on + strand, within Ac3H11_2630at 913.163 kb on + strand, within Ac3H11_2630at 913.163 kb on + strand, within Ac3H11_2630at 913.163 kb on + strand, within Ac3H11_2630at 913.164 kb on - strand, within Ac3H11_2630at 913.164 kb on - strand, within Ac3H11_2630at 913.164 kb on - strand, within Ac3H11_2630at 913.164 kb on - strand, within Ac3H11_2630at 913.256 kb on + strand, within Ac3H11_2630at 913.256 kb on + strand, within Ac3H11_2630at 913.317 kb on - strand, within Ac3H11_2630at 913.317 kb on - strand, within Ac3H11_2630at 913.317 kb on - strand, within Ac3H11_2630at 913.505 kb on + strand, within Ac3H11_2630at 913.505 kb on + strand, within Ac3H11_2630at 913.505 kb on + strand, within Ac3H11_2630at 913.505 kb on + strand, within Ac3H11_2630at 913.506 kb on - strand, within Ac3H11_2630at 913.506 kb on - strand, within Ac3H11_2630at 913.506 kb on - strand, within Ac3H11_2630at 913.506 kb on - strand, within Ac3H11_2630at 913.580 kb on + strand, within Ac3H11_2630at 913.595 kb on + strand, within Ac3H11_2630at 913.595 kb on + strand, within Ac3H11_2630at 913.596 kb on - strand, within Ac3H11_2630at 913.721 kb on + strandat 913.722 kb on - strandat 913.774 kb on - strandat 915.261 kb on + strand, within Ac3H11_2632at 915.295 kb on + strand, within Ac3H11_2632

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Leucine (N)
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912,873 - -1.8
912,873 - -0.1
912,873 - -2.3
912,957 - Ac3H11_2630 0.16 +0.7
912,957 - Ac3H11_2630 0.16 -0.7
913,052 + Ac3H11_2630 0.26 +0.4
913,052 + Ac3H11_2630 0.26 -2.6
913,052 + Ac3H11_2630 0.26 -0.3
913,052 + Ac3H11_2630 0.26 -0.5
913,052 + Ac3H11_2630 0.26 -0.4
913,053 - Ac3H11_2630 0.26 -0.9
913,053 - Ac3H11_2630 0.26 -1.4
913,053 - Ac3H11_2630 0.26 -0.1
913,053 - Ac3H11_2630 0.26 +0.0
913,053 - Ac3H11_2630 0.26 +0.4
913,053 - Ac3H11_2630 0.26 +0.1
913,053 - Ac3H11_2630 0.26 -0.4
913,068 - Ac3H11_2630 0.28 +0.7
913,100 + Ac3H11_2630 0.31 -0.6
913,100 + Ac3H11_2630 0.31 -1.0
913,100 + Ac3H11_2630 0.31 -0.7
913,100 + Ac3H11_2630 0.31 -0.1
913,100 + Ac3H11_2630 0.31 +0.6
913,101 - Ac3H11_2630 0.31 -0.4
913,163 + Ac3H11_2630 0.38 -1.3
913,163 + Ac3H11_2630 0.38 +0.1
913,163 + Ac3H11_2630 0.38 -0.0
913,163 + Ac3H11_2630 0.38 +0.1
913,163 + Ac3H11_2630 0.38 -1.8
913,164 - Ac3H11_2630 0.38 -0.9
913,164 - Ac3H11_2630 0.38 -0.2
913,164 - Ac3H11_2630 0.38 -1.3
913,164 - Ac3H11_2630 0.38 -0.3
913,256 + Ac3H11_2630 0.49 -0.3
913,256 + Ac3H11_2630 0.49 +0.2
913,317 - Ac3H11_2630 0.55 -1.9
913,317 - Ac3H11_2630 0.55 -0.4
913,317 - Ac3H11_2630 0.55 -0.4
913,505 + Ac3H11_2630 0.76 +0.3
913,505 + Ac3H11_2630 0.76 -0.5
913,505 + Ac3H11_2630 0.76 -0.6
913,505 + Ac3H11_2630 0.76 -1.2
913,506 - Ac3H11_2630 0.76 -0.4
913,506 - Ac3H11_2630 0.76 -0.2
913,506 - Ac3H11_2630 0.76 -1.8
913,506 - Ac3H11_2630 0.76 -1.0
913,580 + Ac3H11_2630 0.84 +0.8
913,595 + Ac3H11_2630 0.86 +0.1
913,595 + Ac3H11_2630 0.86 -0.5
913,596 - Ac3H11_2630 0.86 -0.6
913,721 + +1.0
913,722 - +0.9
913,774 - +0.9
915,261 + Ac3H11_2632 0.34 -0.9
915,295 + Ac3H11_2632 0.39 -0.1

Or see this region's nucleotide sequence