Strain Fitness in Acidovorax sp. GW101-3H11 around Ac3H11_2602

Experiment: L-Leucine (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAc3H11_2601 and Ac3H11_2602 are separated by 233 nucleotidesAc3H11_2602 and Ac3H11_2603 overlap by 4 nucleotides Ac3H11_2601 - Nicotinate phosphoribosyltransferase (EC 2.4.2.11), at 883,991 to 885,211 _2601 Ac3H11_2602 - putative 4-hydroxybenzoyl-CoA thioesterase, at 885,445 to 885,945 _2602 Ac3H11_2603 - Deacetylases, including yeast histone deacetylase and acetoin utilization protein, at 885,942 to 886,880 _2603 Position (kb) 885 886Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 884.530 kb on - strand, within Ac3H11_2601at 884.530 kb on - strand, within Ac3H11_2601at 884.530 kb on - strand, within Ac3H11_2601at 884.577 kb on + strand, within Ac3H11_2601at 884.578 kb on - strand, within Ac3H11_2601at 884.578 kb on - strand, within Ac3H11_2601at 884.578 kb on - strand, within Ac3H11_2601at 884.826 kb on + strand, within Ac3H11_2601at 884.826 kb on + strand, within Ac3H11_2601at 884.826 kb on + strand, within Ac3H11_2601at 884.826 kb on + strand, within Ac3H11_2601at 884.827 kb on - strand, within Ac3H11_2601at 884.827 kb on - strand, within Ac3H11_2601at 884.827 kb on - strand, within Ac3H11_2601at 884.937 kb on + strand, within Ac3H11_2601at 884.937 kb on + strand, within Ac3H11_2601at 884.937 kb on + strand, within Ac3H11_2601at 884.937 kb on + strand, within Ac3H11_2601at 884.937 kb on + strand, within Ac3H11_2601at 884.938 kb on - strand, within Ac3H11_2601at 884.938 kb on - strand, within Ac3H11_2601at 884.938 kb on - strand, within Ac3H11_2601at 885.009 kb on + strand, within Ac3H11_2601at 885.009 kb on + strand, within Ac3H11_2601at 885.009 kb on + strand, within Ac3H11_2601at 885.010 kb on - strand, within Ac3H11_2601at 885.010 kb on - strand, within Ac3H11_2601at 885.010 kb on - strand, within Ac3H11_2601at 885.010 kb on - strand, within Ac3H11_2601at 885.010 kb on - strand, within Ac3H11_2601at 885.010 kb on - strand, within Ac3H11_2601at 885.010 kb on - strand, within Ac3H11_2601at 885.010 kb on - strand, within Ac3H11_2601at 885.010 kb on - strand, within Ac3H11_2601at 885.010 kb on - strand, within Ac3H11_2601at 885.010 kb on - strand, within Ac3H11_2601at 885.120 kb on + strandat 885.177 kb on + strandat 885.177 kb on + strandat 885.177 kb on + strandat 885.178 kb on - strandat 885.178 kb on - strandat 885.178 kb on - strandat 885.178 kb on - strandat 885.274 kb on + strandat 885.274 kb on + strandat 885.275 kb on - strandat 885.275 kb on - strandat 885.275 kb on - strandat 885.281 kb on + strandat 885.281 kb on + strandat 885.281 kb on + strandat 885.281 kb on + strandat 885.281 kb on + strandat 885.282 kb on - strandat 885.282 kb on - strandat 885.282 kb on - strandat 885.282 kb on - strandat 885.282 kb on - strandat 885.523 kb on + strand, within Ac3H11_2602at 885.523 kb on + strand, within Ac3H11_2602at 885.523 kb on + strand, within Ac3H11_2602at 885.523 kb on + strand, within Ac3H11_2602at 885.523 kb on + strand, within Ac3H11_2602at 885.524 kb on - strand, within Ac3H11_2602at 885.524 kb on - strand, within Ac3H11_2602at 885.527 kb on + strand, within Ac3H11_2602at 885.527 kb on + strand, within Ac3H11_2602at 885.528 kb on - strand, within Ac3H11_2602at 885.593 kb on + strand, within Ac3H11_2602at 885.671 kb on + strand, within Ac3H11_2602at 885.671 kb on + strand, within Ac3H11_2602at 885.671 kb on + strand, within Ac3H11_2602at 885.671 kb on + strand, within Ac3H11_2602at 885.672 kb on - strand, within Ac3H11_2602at 885.672 kb on - strand, within Ac3H11_2602at 885.672 kb on - strand, within Ac3H11_2602at 885.672 kb on - strand, within Ac3H11_2602at 885.776 kb on + strand, within Ac3H11_2602at 885.776 kb on + strand, within Ac3H11_2602at 885.777 kb on - strand, within Ac3H11_2602at 885.777 kb on - strand, within Ac3H11_2602at 885.777 kb on - strand, within Ac3H11_2602at 885.777 kb on - strand, within Ac3H11_2602at 885.779 kb on + strand, within Ac3H11_2602at 885.779 kb on + strand, within Ac3H11_2602at 885.779 kb on + strand, within Ac3H11_2602at 885.803 kb on + strand, within Ac3H11_2602at 885.803 kb on + strand, within Ac3H11_2602at 885.803 kb on + strand, within Ac3H11_2602at 885.804 kb on - strand, within Ac3H11_2602at 885.973 kb on + strandat 885.974 kb on - strandat 885.974 kb on - strandat 886.180 kb on + strand, within Ac3H11_2603at 886.180 kb on + strand, within Ac3H11_2603at 886.180 kb on + strand, within Ac3H11_2603at 886.180 kb on + strand, within Ac3H11_2603at 886.181 kb on - strand, within Ac3H11_2603at 886.181 kb on - strand, within Ac3H11_2603at 886.181 kb on - strand, within Ac3H11_2603at 886.246 kb on + strand, within Ac3H11_2603at 886.247 kb on - strand, within Ac3H11_2603at 886.247 kb on - strand, within Ac3H11_2603at 886.367 kb on + strand, within Ac3H11_2603at 886.367 kb on + strand, within Ac3H11_2603at 886.367 kb on + strand, within Ac3H11_2603at 886.367 kb on + strand, within Ac3H11_2603at 886.368 kb on - strand, within Ac3H11_2603at 886.525 kb on + strand, within Ac3H11_2603at 886.525 kb on + strand, within Ac3H11_2603at 886.525 kb on + strand, within Ac3H11_2603at 886.525 kb on + strand, within Ac3H11_2603at 886.525 kb on + strand, within Ac3H11_2603at 886.525 kb on + strand, within Ac3H11_2603at 886.526 kb on - strand, within Ac3H11_2603at 886.526 kb on - strand, within Ac3H11_2603at 886.526 kb on - strand, within Ac3H11_2603at 886.526 kb on - strand, within Ac3H11_2603at 886.705 kb on + strand, within Ac3H11_2603at 886.705 kb on + strand, within Ac3H11_2603at 886.705 kb on + strand, within Ac3H11_2603at 886.705 kb on + strand, within Ac3H11_2603at 886.705 kb on + strand, within Ac3H11_2603at 886.705 kb on + strand, within Ac3H11_2603at 886.705 kb on + strand, within Ac3H11_2603at 886.706 kb on - strand, within Ac3H11_2603at 886.706 kb on - strand, within Ac3H11_2603at 886.810 kb on + strandat 886.811 kb on - strandat 886.867 kb on + strandat 886.867 kb on + strandat 886.867 kb on + strandat 886.868 kb on - strandat 886.868 kb on - strandat 886.870 kb on + strandat 886.870 kb on + strandat 886.870 kb on + strandat 886.870 kb on + strandat 886.871 kb on - strandat 886.919 kb on + strandat 886.919 kb on + strandat 886.920 kb on - strandat 886.920 kb on - strandat 886.920 kb on - strandat 886.920 kb on - strandat 886.920 kb on - strandat 886.923 kb on + strandat 886.924 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Leucine (N)
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884,530 - Ac3H11_2601 0.44 -0.0
884,530 - Ac3H11_2601 0.44 -0.1
884,530 - Ac3H11_2601 0.44 +0.7
884,577 + Ac3H11_2601 0.48 -1.0
884,578 - Ac3H11_2601 0.48 -1.2
884,578 - Ac3H11_2601 0.48 -1.8
884,578 - Ac3H11_2601 0.48 -1.2
884,826 + Ac3H11_2601 0.68 -0.7
884,826 + Ac3H11_2601 0.68 -1.5
884,826 + Ac3H11_2601 0.68 -0.5
884,826 + Ac3H11_2601 0.68 -0.0
884,827 - Ac3H11_2601 0.68 -1.2
884,827 - Ac3H11_2601 0.68 +0.9
884,827 - Ac3H11_2601 0.68 +0.7
884,937 + Ac3H11_2601 0.77 -1.7
884,937 + Ac3H11_2601 0.77 -1.5
884,937 + Ac3H11_2601 0.77 -0.4
884,937 + Ac3H11_2601 0.77 -2.7
884,937 + Ac3H11_2601 0.77 -1.3
884,938 - Ac3H11_2601 0.78 -2.4
884,938 - Ac3H11_2601 0.78 +0.3
884,938 - Ac3H11_2601 0.78 -0.1
885,009 + Ac3H11_2601 0.83 -0.4
885,009 + Ac3H11_2601 0.83 -2.8
885,009 + Ac3H11_2601 0.83 -1.4
885,010 - Ac3H11_2601 0.83 -1.0
885,010 - Ac3H11_2601 0.83 -2.1
885,010 - Ac3H11_2601 0.83 -3.7
885,010 - Ac3H11_2601 0.83 -0.2
885,010 - Ac3H11_2601 0.83 -3.3
885,010 - Ac3H11_2601 0.83 +1.2
885,010 - Ac3H11_2601 0.83 -1.2
885,010 - Ac3H11_2601 0.83 -0.8
885,010 - Ac3H11_2601 0.83 -1.5
885,010 - Ac3H11_2601 0.83 -0.1
885,010 - Ac3H11_2601 0.83 +0.5
885,120 + -1.4
885,177 + -2.4
885,177 + -1.8
885,177 + +0.2
885,178 - -0.7
885,178 - +1.0
885,178 - -0.9
885,178 - +0.3
885,274 + -0.2
885,274 + +0.1
885,275 - +2.3
885,275 - -0.4
885,275 - -1.2
885,281 + +1.5
885,281 + +0.3
885,281 + +1.4
885,281 + +0.8
885,281 + +1.1
885,282 - -2.0
885,282 - +1.5
885,282 - +1.4
885,282 - +2.7
885,282 - +0.6
885,523 + Ac3H11_2602 0.16 +0.1
885,523 + Ac3H11_2602 0.16 -0.6
885,523 + Ac3H11_2602 0.16 +0.6
885,523 + Ac3H11_2602 0.16 +0.6
885,523 + Ac3H11_2602 0.16 +0.1
885,524 - Ac3H11_2602 0.16 -0.5
885,524 - Ac3H11_2602 0.16 +1.2
885,527 + Ac3H11_2602 0.16 +1.1
885,527 + Ac3H11_2602 0.16 -0.5
885,528 - Ac3H11_2602 0.17 -0.8
885,593 + Ac3H11_2602 0.30 +0.7
885,671 + Ac3H11_2602 0.45 +1.3
885,671 + Ac3H11_2602 0.45 -0.6
885,671 + Ac3H11_2602 0.45 -0.6
885,671 + Ac3H11_2602 0.45 +0.1
885,672 - Ac3H11_2602 0.45 +0.9
885,672 - Ac3H11_2602 0.45 +0.5
885,672 - Ac3H11_2602 0.45 +0.2
885,672 - Ac3H11_2602 0.45 +0.0
885,776 + Ac3H11_2602 0.66 +1.7
885,776 + Ac3H11_2602 0.66 -0.3
885,777 - Ac3H11_2602 0.66 +1.9
885,777 - Ac3H11_2602 0.66 -1.4
885,777 - Ac3H11_2602 0.66 +1.7
885,777 - Ac3H11_2602 0.66 -1.1
885,779 + Ac3H11_2602 0.67 -0.6
885,779 + Ac3H11_2602 0.67 +0.4
885,779 + Ac3H11_2602 0.67 -0.2
885,803 + Ac3H11_2602 0.71 -1.1
885,803 + Ac3H11_2602 0.71 -0.1
885,803 + Ac3H11_2602 0.71 +3.5
885,804 - Ac3H11_2602 0.72 +0.8
885,973 + +0.2
885,974 - -0.7
885,974 - -0.0
886,180 + Ac3H11_2603 0.25 +0.0
886,180 + Ac3H11_2603 0.25 -0.1
886,180 + Ac3H11_2603 0.25 -0.1
886,180 + Ac3H11_2603 0.25 +0.3
886,181 - Ac3H11_2603 0.25 +0.3
886,181 - Ac3H11_2603 0.25 +0.5
886,181 - Ac3H11_2603 0.25 +0.5
886,246 + Ac3H11_2603 0.32 +0.4
886,247 - Ac3H11_2603 0.32 -0.0
886,247 - Ac3H11_2603 0.32 -1.1
886,367 + Ac3H11_2603 0.45 +0.9
886,367 + Ac3H11_2603 0.45 +0.8
886,367 + Ac3H11_2603 0.45 +0.4
886,367 + Ac3H11_2603 0.45 +0.6
886,368 - Ac3H11_2603 0.45 +0.1
886,525 + Ac3H11_2603 0.62 +0.4
886,525 + Ac3H11_2603 0.62 -0.1
886,525 + Ac3H11_2603 0.62 +0.3
886,525 + Ac3H11_2603 0.62 -0.6
886,525 + Ac3H11_2603 0.62 -1.0
886,525 + Ac3H11_2603 0.62 -1.2
886,526 - Ac3H11_2603 0.62 -0.5
886,526 - Ac3H11_2603 0.62 -0.3
886,526 - Ac3H11_2603 0.62 +0.4
886,526 - Ac3H11_2603 0.62 +0.8
886,705 + Ac3H11_2603 0.81 -0.8
886,705 + Ac3H11_2603 0.81 -0.1
886,705 + Ac3H11_2603 0.81 -1.1
886,705 + Ac3H11_2603 0.81 -0.2
886,705 + Ac3H11_2603 0.81 +0.2
886,705 + Ac3H11_2603 0.81 +0.2
886,705 + Ac3H11_2603 0.81 +0.0
886,706 - Ac3H11_2603 0.81 -0.0
886,706 - Ac3H11_2603 0.81 +0.5
886,810 + -0.2
886,811 - -1.4
886,867 + -0.0
886,867 + +0.9
886,867 + -0.1
886,868 - -0.9
886,868 - -1.5
886,870 + +0.1
886,870 + -0.5
886,870 + -0.2
886,870 + +0.4
886,871 - -0.7
886,919 + -2.7
886,919 + -0.9
886,920 - -0.1
886,920 - -1.2
886,920 - +3.0
886,920 - +0.9
886,920 - +0.4
886,923 + -0.3
886,924 - +0.6

Or see this region's nucleotide sequence