Strain Fitness in Acidovorax sp. GW101-3H11 around Ac3H11_1988

Experiment: L-Leucine (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAc3H11_1987 and Ac3H11_1988 are separated by 101 nucleotidesAc3H11_1988 and Ac3H11_1989 are separated by 7 nucleotides Ac3H11_1987 - Tricarboxylate transport protein TctC, at 203,788 to 204,750 _1987 Ac3H11_1988 - transcriptional regulator, LysR family, at 204,852 to 205,721 _1988 Ac3H11_1989 - Putative drug efflux protein, at 205,729 to 206,931 _1989 Position (kb) 204 205 206Strain fitness (log2 ratio) -3 -2 -1 0 1at 203.879 kb on + strandat 204.209 kb on + strand, within Ac3H11_1987at 204.296 kb on + strand, within Ac3H11_1987at 204.297 kb on - strand, within Ac3H11_1987at 204.297 kb on - strand, within Ac3H11_1987at 204.297 kb on - strand, within Ac3H11_1987at 204.297 kb on - strand, within Ac3H11_1987at 204.327 kb on - strand, within Ac3H11_1987at 204.327 kb on - strand, within Ac3H11_1987at 204.470 kb on + strand, within Ac3H11_1987at 204.480 kb on - strand, within Ac3H11_1987at 204.497 kb on + strand, within Ac3H11_1987at 204.497 kb on + strand, within Ac3H11_1987at 204.497 kb on + strand, within Ac3H11_1987at 204.497 kb on + strand, within Ac3H11_1987at 204.530 kb on + strand, within Ac3H11_1987at 204.680 kb on + strandat 204.784 kb on + strandat 204.817 kb on + strandat 204.847 kb on + strandat 204.873 kb on + strandat 204.874 kb on - strandat 205.041 kb on + strand, within Ac3H11_1988at 205.041 kb on + strand, within Ac3H11_1988at 205.042 kb on - strand, within Ac3H11_1988at 205.042 kb on - strand, within Ac3H11_1988at 205.042 kb on - strand, within Ac3H11_1988at 205.042 kb on - strand, within Ac3H11_1988at 205.991 kb on + strand, within Ac3H11_1989at 205.991 kb on + strand, within Ac3H11_1989at 205.991 kb on + strand, within Ac3H11_1989at 205.991 kb on + strand, within Ac3H11_1989at 205.991 kb on + strand, within Ac3H11_1989at 205.991 kb on + strand, within Ac3H11_1989at 205.991 kb on + strand, within Ac3H11_1989at 205.991 kb on + strand, within Ac3H11_1989at 205.991 kb on + strand, within Ac3H11_1989at 205.991 kb on + strand, within Ac3H11_1989at 205.991 kb on + strand, within Ac3H11_1989at 205.991 kb on + strand, within Ac3H11_1989at 205.991 kb on + strand, within Ac3H11_1989at 205.991 kb on + strand, within Ac3H11_1989at 205.991 kb on + strand, within Ac3H11_1989at 205.992 kb on - strand, within Ac3H11_1989at 205.992 kb on - strand, within Ac3H11_1989at 205.992 kb on - strand, within Ac3H11_1989at 205.992 kb on - strand, within Ac3H11_1989at 205.992 kb on - strand, within Ac3H11_1989at 205.992 kb on - strand, within Ac3H11_1989at 205.992 kb on - strand, within Ac3H11_1989at 205.992 kb on - strand, within Ac3H11_1989at 205.992 kb on - strand, within Ac3H11_1989at 206.198 kb on + strand, within Ac3H11_1989at 206.198 kb on + strand, within Ac3H11_1989at 206.199 kb on - strand, within Ac3H11_1989at 206.199 kb on - strand, within Ac3H11_1989at 206.263 kb on + strand, within Ac3H11_1989at 206.264 kb on - strand, within Ac3H11_1989at 206.264 kb on - strand, within Ac3H11_1989at 206.264 kb on - strand, within Ac3H11_1989at 206.264 kb on - strand, within Ac3H11_1989at 206.315 kb on + strand, within Ac3H11_1989at 206.315 kb on + strand, within Ac3H11_1989at 206.316 kb on - strand, within Ac3H11_1989

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Leucine (N)
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203,879 + -0.7
204,209 + Ac3H11_1987 0.44 -2.7
204,296 + Ac3H11_1987 0.53 -0.9
204,297 - Ac3H11_1987 0.53 +1.1
204,297 - Ac3H11_1987 0.53 +0.7
204,297 - Ac3H11_1987 0.53 +0.2
204,297 - Ac3H11_1987 0.53 +1.0
204,327 - Ac3H11_1987 0.56 -1.0
204,327 - Ac3H11_1987 0.56 +1.5
204,470 + Ac3H11_1987 0.71 +0.7
204,480 - Ac3H11_1987 0.72 +1.3
204,497 + Ac3H11_1987 0.74 +0.0
204,497 + Ac3H11_1987 0.74 +0.6
204,497 + Ac3H11_1987 0.74 +0.7
204,497 + Ac3H11_1987 0.74 +1.1
204,530 + Ac3H11_1987 0.77 -0.1
204,680 + +0.5
204,784 + -0.4
204,817 + +0.8
204,847 + +0.3
204,873 + -0.2
204,874 - +0.1
205,041 + Ac3H11_1988 0.22 +0.6
205,041 + Ac3H11_1988 0.22 +0.3
205,042 - Ac3H11_1988 0.22 -0.7
205,042 - Ac3H11_1988 0.22 -0.2
205,042 - Ac3H11_1988 0.22 -1.5
205,042 - Ac3H11_1988 0.22 -0.7
205,991 + Ac3H11_1989 0.22 -0.1
205,991 + Ac3H11_1989 0.22 -2.3
205,991 + Ac3H11_1989 0.22 -1.3
205,991 + Ac3H11_1989 0.22 -0.9
205,991 + Ac3H11_1989 0.22 +0.4
205,991 + Ac3H11_1989 0.22 -1.0
205,991 + Ac3H11_1989 0.22 -0.8
205,991 + Ac3H11_1989 0.22 +0.1
205,991 + Ac3H11_1989 0.22 +0.7
205,991 + Ac3H11_1989 0.22 +1.2
205,991 + Ac3H11_1989 0.22 +0.4
205,991 + Ac3H11_1989 0.22 +0.6
205,991 + Ac3H11_1989 0.22 +0.8
205,991 + Ac3H11_1989 0.22 +0.6
205,991 + Ac3H11_1989 0.22 -1.2
205,992 - Ac3H11_1989 0.22 +0.1
205,992 - Ac3H11_1989 0.22 -0.7
205,992 - Ac3H11_1989 0.22 -3.3
205,992 - Ac3H11_1989 0.22 +1.6
205,992 - Ac3H11_1989 0.22 -0.8
205,992 - Ac3H11_1989 0.22 -0.4
205,992 - Ac3H11_1989 0.22 -0.8
205,992 - Ac3H11_1989 0.22 +0.1
205,992 - Ac3H11_1989 0.22 +0.6
206,198 + Ac3H11_1989 0.39 +0.5
206,198 + Ac3H11_1989 0.39 +1.3
206,199 - Ac3H11_1989 0.39 -1.3
206,199 - Ac3H11_1989 0.39 +0.7
206,263 + Ac3H11_1989 0.44 +0.9
206,264 - Ac3H11_1989 0.44 -0.6
206,264 - Ac3H11_1989 0.44 +0.4
206,264 - Ac3H11_1989 0.44 -1.2
206,264 - Ac3H11_1989 0.44 -0.3
206,315 + Ac3H11_1989 0.49 +1.3
206,315 + Ac3H11_1989 0.49 -0.3
206,316 - Ac3H11_1989 0.49 -1.4

Or see this region's nucleotide sequence