Experiment: Nalidixic 0.004 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AO353_26220 and AO353_26225 are separated by 16 nucleotides AO353_26225 and AO353_26230 are separated by 3 nucleotides AO353_26230 and AO353_26235 are separated by 46 nucleotides AO353_26235 and AO353_26240 are separated by 12 nucleotides AO353_26240 and AO353_26245 are separated by 81 nucleotides
AO353_26220: AO353_26220 - hypothetical protein, at 5,766,683 to 5,767,054
_26220
AO353_26225: AO353_26225 - hypothetical protein, at 5,767,071 to 5,767,574
_26225
AO353_26230: AO353_26230 - hypothetical protein, at 5,767,578 to 5,767,895
_26230
AO353_26235: AO353_26235 - hypothetical protein, at 5,767,942 to 5,768,907
_26235
AO353_26240: AO353_26240 - hypothetical protein, at 5,768,920 to 5,769,648
_26240
AO353_26245: AO353_26245 - phage head morphogenesis protein, at 5,769,730 to 5,770,815
_26245
Position (kb) 5767
5768
5769 Strain fitness (log2 ratio) -2
-1
0
1
2 at 5766.946 kb on + strand, within AO353_26220 at 5766.946 kb on + strand, within AO353_26220 at 5766.957 kb on + strand, within AO353_26220 at 5766.958 kb on - strand, within AO353_26220 at 5766.958 kb on - strand, within AO353_26220 at 5767.041 kb on + strand at 5767.041 kb on + strand at 5767.042 kb on - strand at 5767.073 kb on - strand at 5767.105 kb on - strand at 5767.108 kb on + strand at 5767.108 kb on + strand at 5767.109 kb on - strand at 5767.245 kb on + strand, within AO353_26225 at 5767.245 kb on + strand, within AO353_26225 at 5767.245 kb on + strand, within AO353_26225 at 5767.245 kb on + strand, within AO353_26225 at 5767.246 kb on - strand, within AO353_26225 at 5767.319 kb on - strand, within AO353_26225 at 5767.319 kb on - strand, within AO353_26225 at 5767.319 kb on - strand, within AO353_26225 at 5767.319 kb on - strand, within AO353_26225 at 5767.319 kb on - strand, within AO353_26225 at 5767.319 kb on - strand, within AO353_26225 at 5767.475 kb on + strand, within AO353_26225 at 5767.498 kb on + strand, within AO353_26225 at 5767.498 kb on + strand, within AO353_26225 at 5767.499 kb on - strand, within AO353_26225 at 5767.499 kb on - strand, within AO353_26225 at 5767.499 kb on - strand, within AO353_26225 at 5767.525 kb on + strand at 5767.525 kb on + strand at 5767.525 kb on + strand at 5767.525 kb on + strand at 5767.526 kb on - strand at 5767.526 kb on - strand at 5767.579 kb on + strand at 5767.579 kb on + strand at 5767.580 kb on - strand at 5767.580 kb on - strand at 5767.630 kb on + strand, within AO353_26230 at 5767.630 kb on + strand, within AO353_26230 at 5767.631 kb on - strand, within AO353_26230 at 5767.631 kb on - strand, within AO353_26230 at 5767.631 kb on - strand, within AO353_26230 at 5767.756 kb on + strand, within AO353_26230 at 5767.756 kb on + strand, within AO353_26230 at 5767.756 kb on + strand, within AO353_26230 at 5767.756 kb on + strand, within AO353_26230 at 5767.756 kb on + strand, within AO353_26230 at 5767.757 kb on - strand, within AO353_26230 at 5767.827 kb on + strand, within AO353_26230 at 5767.828 kb on - strand, within AO353_26230 at 5767.828 kb on - strand, within AO353_26230 at 5767.839 kb on - strand, within AO353_26230 at 5767.839 kb on - strand, within AO353_26230 at 5767.882 kb on + strand at 5767.882 kb on + strand at 5767.882 kb on + strand at 5767.882 kb on + strand at 5767.883 kb on - strand at 5767.953 kb on + strand at 5767.953 kb on + strand at 5767.954 kb on - strand at 5767.972 kb on + strand at 5767.973 kb on - strand at 5767.973 kb on - strand at 5767.973 kb on - strand at 5768.098 kb on + strand, within AO353_26235 at 5768.098 kb on + strand, within AO353_26235 at 5768.099 kb on - strand, within AO353_26235 at 5768.165 kb on + strand, within AO353_26235 at 5768.165 kb on + strand, within AO353_26235 at 5768.166 kb on - strand, within AO353_26235 at 5768.294 kb on + strand, within AO353_26235 at 5768.318 kb on + strand, within AO353_26235 at 5768.318 kb on + strand, within AO353_26235 at 5768.319 kb on - strand, within AO353_26235 at 5768.358 kb on - strand, within AO353_26235 at 5768.412 kb on + strand, within AO353_26235 at 5768.413 kb on - strand, within AO353_26235 at 5768.454 kb on + strand, within AO353_26235 at 5768.633 kb on + strand, within AO353_26235 at 5768.634 kb on - strand, within AO353_26235 at 5768.634 kb on - strand, within AO353_26235 at 5768.742 kb on - strand, within AO353_26235 at 5768.755 kb on - strand, within AO353_26235 at 5768.755 kb on - strand, within AO353_26235 at 5768.845 kb on + strand at 5768.845 kb on + strand at 5768.845 kb on + strand at 5768.845 kb on + strand at 5768.845 kb on + strand at 5768.846 kb on - strand at 5768.846 kb on - strand at 5768.846 kb on - strand at 5768.846 kb on - strand at 5768.846 kb on - strand at 5768.873 kb on + strand at 5768.873 kb on + strand at 5768.873 kb on + strand at 5768.873 kb on + strand at 5768.873 kb on + strand at 5768.874 kb on - strand at 5768.874 kb on - strand at 5768.874 kb on - strand at 5768.893 kb on + strand at 5768.894 kb on - strand at 5768.901 kb on + strand at 5768.901 kb on + strand at 5768.902 kb on - strand at 5768.902 kb on - strand at 5768.902 kb on - strand at 5768.921 kb on + strand at 5768.939 kb on + strand at 5768.940 kb on - strand at 5769.280 kb on + strand, within AO353_26240 at 5769.280 kb on + strand, within AO353_26240 at 5769.519 kb on + strand, within AO353_26240 at 5769.538 kb on + strand, within AO353_26240 at 5769.539 kb on - strand, within AO353_26240 at 5769.856 kb on + strand, within AO353_26245
Per-strain Table
Position Strand Gene LocusTag Fraction Nalidixic 0.004 mg/ml remove 5,766,946 + AO353_26220 0.71 +0.4 5,766,946 + AO353_26220 0.71 +2.5 5,766,957 + AO353_26220 0.74 -0.9 5,766,958 - AO353_26220 0.74 +1.0 5,766,958 - AO353_26220 0.74 +0.3 5,767,041 + +0.6 5,767,041 + -0.2 5,767,042 - -0.7 5,767,073 - -0.2 5,767,105 - +0.4 5,767,108 + -0.4 5,767,108 + +1.1 5,767,109 - -0.3 5,767,245 + AO353_26225 0.35 +0.2 5,767,245 + AO353_26225 0.35 -1.4 5,767,245 + AO353_26225 0.35 -0.4 5,767,245 + AO353_26225 0.35 -1.3 5,767,246 - AO353_26225 0.35 +0.3 5,767,319 - AO353_26225 0.49 +0.5 5,767,319 - AO353_26225 0.49 -0.9 5,767,319 - AO353_26225 0.49 -0.6 5,767,319 - AO353_26225 0.49 -0.8 5,767,319 - AO353_26225 0.49 +0.6 5,767,319 - AO353_26225 0.49 -0.0 5,767,475 + AO353_26225 0.80 -0.4 5,767,498 + AO353_26225 0.85 +1.2 5,767,498 + AO353_26225 0.85 +0.1 5,767,499 - AO353_26225 0.85 +0.1 5,767,499 - AO353_26225 0.85 +1.2 5,767,499 - AO353_26225 0.85 +2.2 5,767,525 + -1.4 5,767,525 + +0.3 5,767,525 + +0.8 5,767,525 + +0.9 5,767,526 - +0.8 5,767,526 - +0.1 5,767,579 + +1.6 5,767,579 + +0.2 5,767,580 - -0.1 5,767,580 - +0.1 5,767,630 + AO353_26230 0.16 -0.4 5,767,630 + AO353_26230 0.16 -1.6 5,767,631 - AO353_26230 0.17 +2.5 5,767,631 - AO353_26230 0.17 -0.5 5,767,631 - AO353_26230 0.17 -0.0 5,767,756 + AO353_26230 0.56 +0.2 5,767,756 + AO353_26230 0.56 +0.6 5,767,756 + AO353_26230 0.56 +0.2 5,767,756 + AO353_26230 0.56 +0.5 5,767,756 + AO353_26230 0.56 +0.3 5,767,757 - AO353_26230 0.56 +0.2 5,767,827 + AO353_26230 0.78 +0.2 5,767,828 - AO353_26230 0.79 +1.6 5,767,828 - AO353_26230 0.79 -0.4 5,767,839 - AO353_26230 0.82 +0.6 5,767,839 - AO353_26230 0.82 +0.2 5,767,882 + -0.4 5,767,882 + +1.0 5,767,882 + +0.6 5,767,882 + -0.5 5,767,883 - +0.4 5,767,953 + -1.5 5,767,953 + +0.8 5,767,954 - -2.7 5,767,972 + -0.4 5,767,973 - +0.1 5,767,973 - +0.1 5,767,973 - +2.0 5,768,098 + AO353_26235 0.16 -1.4 5,768,098 + AO353_26235 0.16 +0.6 5,768,099 - AO353_26235 0.16 -1.1 5,768,165 + AO353_26235 0.23 +0.4 5,768,165 + AO353_26235 0.23 -1.7 5,768,166 - AO353_26235 0.23 -0.4 5,768,294 + AO353_26235 0.36 +0.6 5,768,318 + AO353_26235 0.39 -0.8 5,768,318 + AO353_26235 0.39 -2.4 5,768,319 - AO353_26235 0.39 -0.6 5,768,358 - AO353_26235 0.43 -1.5 5,768,412 + AO353_26235 0.49 -1.4 5,768,413 - AO353_26235 0.49 -1.5 5,768,454 + AO353_26235 0.53 +1.1 5,768,633 + AO353_26235 0.72 -1.4 5,768,634 - AO353_26235 0.72 -2.2 5,768,634 - AO353_26235 0.72 -1.7 5,768,742 - AO353_26235 0.83 -0.5 5,768,755 - AO353_26235 0.84 +2.2 5,768,755 - AO353_26235 0.84 +0.2 5,768,845 + +0.1 5,768,845 + +0.1 5,768,845 + -0.5 5,768,845 + -0.6 5,768,845 + -0.4 5,768,846 - +0.1 5,768,846 - -0.1 5,768,846 - -0.2 5,768,846 - -0.4 5,768,846 - -0.9 5,768,873 + +1.6 5,768,873 + +0.1 5,768,873 + -0.4 5,768,873 + +0.6 5,768,873 + +0.1 5,768,874 - +0.3 5,768,874 - +1.5 5,768,874 - +0.6 5,768,893 + +0.6 5,768,894 - -0.9 5,768,901 + -0.7 5,768,901 + -0.1 5,768,902 - +0.2 5,768,902 - -0.1 5,768,902 - -0.0 5,768,921 + +0.1 5,768,939 + +0.1 5,768,940 - +1.4 5,769,280 + AO353_26240 0.49 +1.0 5,769,280 + AO353_26240 0.49 -2.5 5,769,519 + AO353_26240 0.82 -0.4 5,769,538 + AO353_26240 0.85 +0.2 5,769,539 - AO353_26240 0.85 +1.2 5,769,856 + AO353_26245 0.12 +0.1
Or see this region's nucleotide sequence