Strain Fitness in Pseudomonas fluorescens FW300-N2E3 around AO353_25940

Experiment: Nalidixic 0.004 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAO353_25930 and AO353_25935 are separated by 171 nucleotidesAO353_25935 and AO353_25940 are separated by 89 nucleotidesAO353_25940 and AO353_25945 overlap by 4 nucleotidesAO353_25945 and AO353_25950 are separated by 318 nucleotides AO353_25930: AO353_25930 - hypothetical protein, at 5,718,722 to 5,719,279 _25930 AO353_25935: AO353_25935 - hypothetical protein, at 5,719,451 to 5,719,714 _25935 AO353_25940: AO353_25940 - hypothetical protein, at 5,719,804 to 5,720,202 _25940 AO353_25945: AO353_25945 - hypothetical protein, at 5,720,199 to 5,720,471 _25945 AO353_25950: AO353_25950 - ecotin, at 5,720,790 to 5,721,269 _25950 Position (kb) 5719 5720 5721Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 5718.847 kb on - strand, within AO353_25930at 5718.847 kb on - strand, within AO353_25930at 5718.872 kb on + strand, within AO353_25930at 5718.872 kb on + strand, within AO353_25930at 5718.872 kb on + strand, within AO353_25930at 5718.873 kb on - strand, within AO353_25930at 5718.873 kb on - strand, within AO353_25930at 5718.873 kb on - strand, within AO353_25930at 5718.873 kb on - strand, within AO353_25930at 5718.878 kb on + strand, within AO353_25930at 5718.878 kb on + strand, within AO353_25930at 5718.879 kb on - strand, within AO353_25930at 5718.879 kb on - strand, within AO353_25930at 5718.879 kb on - strand, within AO353_25930at 5718.910 kb on + strand, within AO353_25930at 5718.911 kb on - strand, within AO353_25930at 5718.940 kb on + strand, within AO353_25930at 5718.941 kb on - strand, within AO353_25930at 5718.941 kb on - strand, within AO353_25930at 5718.980 kb on - strand, within AO353_25930at 5718.980 kb on - strand, within AO353_25930at 5718.981 kb on + strand, within AO353_25930at 5718.981 kb on + strand, within AO353_25930at 5718.982 kb on - strand, within AO353_25930at 5718.982 kb on - strand, within AO353_25930at 5718.982 kb on - strand, within AO353_25930at 5718.988 kb on - strand, within AO353_25930at 5719.020 kb on - strand, within AO353_25930at 5719.020 kb on - strand, within AO353_25930at 5719.020 kb on - strand, within AO353_25930at 5719.020 kb on - strand, within AO353_25930at 5719.043 kb on + strand, within AO353_25930at 5719.065 kb on + strand, within AO353_25930at 5719.065 kb on + strand, within AO353_25930at 5719.066 kb on - strand, within AO353_25930at 5719.172 kb on + strand, within AO353_25930at 5719.172 kb on + strand, within AO353_25930at 5719.173 kb on - strand, within AO353_25930at 5719.173 kb on - strand, within AO353_25930at 5719.199 kb on + strand, within AO353_25930at 5719.199 kb on + strand, within AO353_25930at 5719.199 kb on + strand, within AO353_25930at 5719.199 kb on + strand, within AO353_25930at 5719.199 kb on + strand, within AO353_25930at 5719.199 kb on + strand, within AO353_25930at 5719.199 kb on + strand, within AO353_25930at 5719.199 kb on + strand, within AO353_25930at 5719.200 kb on - strand, within AO353_25930at 5719.200 kb on - strand, within AO353_25930at 5719.219 kb on - strand, within AO353_25930at 5719.277 kb on + strandat 5719.277 kb on + strandat 5719.278 kb on - strandat 5719.294 kb on + strandat 5719.294 kb on + strandat 5719.345 kb on + strandat 5719.351 kb on + strandat 5719.351 kb on + strandat 5719.463 kb on - strandat 5719.547 kb on + strand, within AO353_25935at 5719.554 kb on - strand, within AO353_25935at 5719.658 kb on - strand, within AO353_25935at 5719.667 kb on + strand, within AO353_25935at 5719.667 kb on + strand, within AO353_25935at 5719.667 kb on + strand, within AO353_25935at 5719.667 kb on + strand, within AO353_25935at 5719.667 kb on + strand, within AO353_25935at 5719.667 kb on + strand, within AO353_25935at 5719.667 kb on + strand, within AO353_25935at 5719.667 kb on + strand, within AO353_25935at 5719.667 kb on + strand, within AO353_25935at 5719.667 kb on + strand, within AO353_25935at 5719.667 kb on + strand, within AO353_25935at 5719.668 kb on - strand, within AO353_25935at 5719.668 kb on - strandat 5719.668 kb on - strand, within AO353_25935at 5719.668 kb on - strand, within AO353_25935at 5719.668 kb on - strand, within AO353_25935at 5719.668 kb on - strand, within AO353_25935at 5719.668 kb on - strand, within AO353_25935at 5719.668 kb on - strand, within AO353_25935at 5719.668 kb on - strand, within AO353_25935at 5719.766 kb on + strandat 5719.766 kb on + strandat 5719.766 kb on + strandat 5719.767 kb on - strandat 5719.878 kb on + strand, within AO353_25940at 5719.878 kb on + strand, within AO353_25940at 5719.878 kb on + strand, within AO353_25940at 5719.878 kb on + strand, within AO353_25940at 5719.878 kb on + strand, within AO353_25940at 5719.878 kb on + strand, within AO353_25940at 5719.879 kb on - strand, within AO353_25940at 5719.879 kb on - strand, within AO353_25940at 5719.880 kb on + strand, within AO353_25940at 5719.881 kb on - strand, within AO353_25940at 5719.984 kb on + strand, within AO353_25940at 5719.984 kb on + strand, within AO353_25940at 5720.201 kb on - strandat 5720.303 kb on + strand, within AO353_25945at 5720.365 kb on + strand, within AO353_25945at 5720.365 kb on + strand, within AO353_25945at 5720.365 kb on + strand, within AO353_25945at 5720.441 kb on + strand, within AO353_25945at 5720.442 kb on - strand, within AO353_25945at 5720.472 kb on + strandat 5720.472 kb on + strandat 5720.472 kb on + strandat 5720.472 kb on + strandat 5720.472 kb on + strandat 5720.472 kb on + strandat 5720.473 kb on - strandat 5720.473 kb on - strandat 5720.473 kb on - strandat 5720.490 kb on + strandat 5720.542 kb on - strandat 5720.542 kb on - strandat 5720.589 kb on + strandat 5720.589 kb on + strandat 5720.590 kb on - strandat 5720.590 kb on - strandat 5720.590 kb on - strandat 5720.590 kb on - strandat 5720.590 kb on - strandat 5720.594 kb on + strandat 5720.594 kb on + strandat 5720.594 kb on + strandat 5720.594 kb on + strandat 5720.594 kb on + strandat 5720.595 kb on - strandat 5720.595 kb on - strandat 5720.595 kb on - strandat 5720.595 kb on - strandat 5720.626 kb on + strandat 5720.635 kb on + strandat 5720.635 kb on + strandat 5720.636 kb on - strandat 5720.686 kb on - strandat 5720.744 kb on + strandat 5720.744 kb on + strandat 5720.744 kb on + strandat 5720.745 kb on - strandat 5720.745 kb on - strandat 5720.745 kb on - strandat 5720.904 kb on - strand, within AO353_25950at 5720.949 kb on + strandat 5720.949 kb on + strand, within AO353_25950at 5720.949 kb on + strand, within AO353_25950at 5720.950 kb on - strand, within AO353_25950at 5720.950 kb on - strand, within AO353_25950at 5720.950 kb on - strand, within AO353_25950at 5720.950 kb on - strand, within AO353_25950at 5721.165 kb on + strand, within AO353_25950at 5721.165 kb on + strand, within AO353_25950at 5721.166 kb on - strand, within AO353_25950at 5721.192 kb on + strand, within AO353_25950at 5721.192 kb on + strand, within AO353_25950at 5721.192 kb on + strand, within AO353_25950at 5721.192 kb on + strand, within AO353_25950at 5721.192 kb on + strand, within AO353_25950at 5721.192 kb on + strand, within AO353_25950at 5721.192 kb on + strand, within AO353_25950at 5721.193 kb on - strand, within AO353_25950at 5721.193 kb on - strand, within AO353_25950

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Per-strain Table

Position Strand Gene LocusTag Fraction Nalidixic 0.004 mg/ml
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5,718,847 - AO353_25930 0.22 -0.8
5,718,847 - AO353_25930 0.22 +1.6
5,718,872 + AO353_25930 0.27 +0.8
5,718,872 + AO353_25930 0.27 +0.0
5,718,872 + AO353_25930 0.27 -0.4
5,718,873 - AO353_25930 0.27 +2.6
5,718,873 - AO353_25930 0.27 -1.4
5,718,873 - AO353_25930 0.27 -1.7
5,718,873 - AO353_25930 0.27 +0.6
5,718,878 + AO353_25930 0.28 -0.4
5,718,878 + AO353_25930 0.28 -1.0
5,718,879 - AO353_25930 0.28 -1.4
5,718,879 - AO353_25930 0.28 -0.4
5,718,879 - AO353_25930 0.28 -2.0
5,718,910 + AO353_25930 0.34 +0.6
5,718,911 - AO353_25930 0.34 +0.8
5,718,940 + AO353_25930 0.39 -0.0
5,718,941 - AO353_25930 0.39 -0.4
5,718,941 - AO353_25930 0.39 +0.1
5,718,980 - AO353_25930 0.46 -1.5
5,718,980 - AO353_25930 0.46 -0.2
5,718,981 + AO353_25930 0.46 +0.4
5,718,981 + AO353_25930 0.46 -1.0
5,718,982 - AO353_25930 0.47 +0.6
5,718,982 - AO353_25930 0.47 +2.0
5,718,982 - AO353_25930 0.47 -0.1
5,718,988 - AO353_25930 0.48 -1.7
5,719,020 - AO353_25930 0.53 +1.0
5,719,020 - AO353_25930 0.53 +1.6
5,719,020 - AO353_25930 0.53 +0.3
5,719,020 - AO353_25930 0.53 -0.4
5,719,043 + AO353_25930 0.58 -1.0
5,719,065 + AO353_25930 0.61 -0.4
5,719,065 + AO353_25930 0.61 +0.0
5,719,066 - AO353_25930 0.62 -1.0
5,719,172 + AO353_25930 0.81 -0.1
5,719,172 + AO353_25930 0.81 -1.0
5,719,173 - AO353_25930 0.81 +0.5
5,719,173 - AO353_25930 0.81 -1.7
5,719,199 + AO353_25930 0.85 -1.5
5,719,199 + AO353_25930 0.85 -0.4
5,719,199 + AO353_25930 0.85 -2.4
5,719,199 + AO353_25930 0.85 +0.5
5,719,199 + AO353_25930 0.85 -0.1
5,719,199 + AO353_25930 0.85 +1.0
5,719,199 + AO353_25930 0.85 +0.2
5,719,199 + AO353_25930 0.85 -0.4
5,719,200 - AO353_25930 0.86 -0.1
5,719,200 - AO353_25930 0.86 +0.8
5,719,219 - AO353_25930 0.89 +0.6
5,719,277 + -0.4
5,719,277 + +1.1
5,719,278 - -0.1
5,719,294 + -2.8
5,719,294 + -0.5
5,719,345 + -0.8
5,719,351 + +0.4
5,719,351 + -0.9
5,719,463 - -0.5
5,719,547 + AO353_25935 0.36 -1.1
5,719,554 - AO353_25935 0.39 +0.2
5,719,658 - AO353_25935 0.78 -0.4
5,719,667 + AO353_25935 0.82 +0.6
5,719,667 + AO353_25935 0.82 -0.1
5,719,667 + AO353_25935 0.82 +0.6
5,719,667 + AO353_25935 0.82 +0.3
5,719,667 + AO353_25935 0.82 -2.4
5,719,667 + AO353_25935 0.82 -0.5
5,719,667 + AO353_25935 0.82 -0.4
5,719,667 + AO353_25935 0.82 -0.4
5,719,667 + AO353_25935 0.82 +0.6
5,719,667 + AO353_25935 0.82 -0.8
5,719,667 + AO353_25935 0.82 -2.0
5,719,668 - AO353_25935 0.82 +0.4
5,719,668 - +0.6
5,719,668 - AO353_25935 0.82 -0.4
5,719,668 - AO353_25935 0.82 -0.2
5,719,668 - AO353_25935 0.82 +0.6
5,719,668 - AO353_25935 0.82 -1.0
5,719,668 - AO353_25935 0.82 +0.3
5,719,668 - AO353_25935 0.82 -2.0
5,719,668 - AO353_25935 0.82 -0.7
5,719,766 + -0.5
5,719,766 + -1.1
5,719,766 + -0.1
5,719,767 - +0.6
5,719,878 + AO353_25940 0.19 +0.8
5,719,878 + AO353_25940 0.19 -0.4
5,719,878 + AO353_25940 0.19 -0.3
5,719,878 + AO353_25940 0.19 +0.2
5,719,878 + AO353_25940 0.19 +0.2
5,719,878 + AO353_25940 0.19 +1.1
5,719,879 - AO353_25940 0.19 +0.6
5,719,879 - AO353_25940 0.19 +1.6
5,719,880 + AO353_25940 0.19 +0.6
5,719,881 - AO353_25940 0.19 +0.0
5,719,984 + AO353_25940 0.45 +0.6
5,719,984 + AO353_25940 0.45 -0.7
5,720,201 - -0.6
5,720,303 + AO353_25945 0.38 +1.0
5,720,365 + AO353_25945 0.61 -0.9
5,720,365 + AO353_25945 0.61 +0.9
5,720,365 + AO353_25945 0.61 -0.1
5,720,441 + AO353_25945 0.89 +0.2
5,720,442 - AO353_25945 0.89 -0.1
5,720,472 + +0.6
5,720,472 + -2.5
5,720,472 + +0.6
5,720,472 + +0.6
5,720,472 + -1.7
5,720,472 + -0.9
5,720,473 - -0.5
5,720,473 - -0.5
5,720,473 - +1.3
5,720,490 + +0.1
5,720,542 - +1.3
5,720,542 - +0.9
5,720,589 + +0.6
5,720,589 + -1.5
5,720,590 - -0.1
5,720,590 - -0.9
5,720,590 - +0.6
5,720,590 - +0.3
5,720,590 - +0.6
5,720,594 + -0.2
5,720,594 + -0.7
5,720,594 + +0.1
5,720,594 + -1.4
5,720,594 + +1.6
5,720,595 - -1.9
5,720,595 - +0.6
5,720,595 - -1.3
5,720,595 - +0.4
5,720,626 + +1.6
5,720,635 + -0.5
5,720,635 + -0.4
5,720,636 - +0.3
5,720,686 - -0.6
5,720,744 + -1.7
5,720,744 + -0.9
5,720,744 + +0.4
5,720,745 - -0.6
5,720,745 - -0.0
5,720,745 - +0.6
5,720,904 - AO353_25950 0.24 -0.1
5,720,949 + +0.6
5,720,949 + AO353_25950 0.33 -0.9
5,720,949 + AO353_25950 0.33 +0.3
5,720,950 - AO353_25950 0.33 -1.1
5,720,950 - AO353_25950 0.33 +0.6
5,720,950 - AO353_25950 0.33 +0.6
5,720,950 - AO353_25950 0.33 +0.2
5,721,165 + AO353_25950 0.78 -1.2
5,721,165 + AO353_25950 0.78 -2.3
5,721,166 - AO353_25950 0.78 -0.5
5,721,192 + AO353_25950 0.84 -1.1
5,721,192 + AO353_25950 0.84 -1.8
5,721,192 + AO353_25950 0.84 +0.1
5,721,192 + AO353_25950 0.84 -0.5
5,721,192 + AO353_25950 0.84 -0.5
5,721,192 + AO353_25950 0.84 -0.6
5,721,192 + AO353_25950 0.84 -0.9
5,721,193 - AO353_25950 0.84 +0.6
5,721,193 - AO353_25950 0.84 -1.2

Or see this region's nucleotide sequence