Strain Fitness in Pseudomonas fluorescens FW300-N2E3 around AO353_19120

Experiment: Nalidixic 0.004 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAO353_19115 and AO353_19120 are separated by 156 nucleotidesAO353_19120 and AO353_19125 are separated by 156 nucleotides AO353_19115: AO353_19115 - phospho-2-dehydro-3-deoxyheptonate aldolase, at 4,192,286 to 4,193,632 _19115 AO353_19120: AO353_19120 - spermidine synthase, at 4,193,789 to 4,194,544 _19120 AO353_19125: AO353_19125 - enoyl-CoA hydratase, at 4,194,701 to 4,195,492 _19125 Position (kb) 4193 4194 4195Strain fitness (log2 ratio) -2 -1 0 1 2at 4192.869 kb on + strand, within AO353_19115at 4192.869 kb on + strand, within AO353_19115at 4192.869 kb on + strand, within AO353_19115at 4192.869 kb on + strand, within AO353_19115at 4192.869 kb on + strand, within AO353_19115at 4192.870 kb on - strand, within AO353_19115at 4192.870 kb on - strand, within AO353_19115at 4192.870 kb on - strand, within AO353_19115at 4192.872 kb on + strand, within AO353_19115at 4192.873 kb on - strand, within AO353_19115at 4192.873 kb on - strand, within AO353_19115at 4192.873 kb on - strand, within AO353_19115at 4192.898 kb on + strand, within AO353_19115at 4192.914 kb on + strand, within AO353_19115at 4192.914 kb on + strand, within AO353_19115at 4192.914 kb on + strand, within AO353_19115at 4192.915 kb on - strand, within AO353_19115at 4192.915 kb on - strand, within AO353_19115at 4192.915 kb on - strand, within AO353_19115at 4192.915 kb on - strand, within AO353_19115at 4193.037 kb on + strand, within AO353_19115at 4193.038 kb on - strand, within AO353_19115at 4193.083 kb on + strand, within AO353_19115at 4193.083 kb on + strand, within AO353_19115at 4193.083 kb on + strand, within AO353_19115at 4193.083 kb on + strand, within AO353_19115at 4193.084 kb on - strand, within AO353_19115at 4193.084 kb on - strand, within AO353_19115at 4193.084 kb on - strand, within AO353_19115at 4193.084 kb on - strand, within AO353_19115at 4193.084 kb on - strand, within AO353_19115at 4193.084 kb on - strand, within AO353_19115at 4193.160 kb on + strand, within AO353_19115at 4193.308 kb on + strand, within AO353_19115at 4193.308 kb on + strand, within AO353_19115at 4193.321 kb on + strand, within AO353_19115at 4193.321 kb on + strand, within AO353_19115at 4193.322 kb on - strand, within AO353_19115at 4193.523 kb on + strandat 4193.524 kb on - strandat 4193.643 kb on - strandat 4193.643 kb on - strandat 4193.643 kb on - strandat 4193.643 kb on - strandat 4193.650 kb on + strandat 4193.651 kb on - strandat 4193.664 kb on + strandat 4193.664 kb on + strandat 4193.664 kb on + strandat 4193.664 kb on + strandat 4193.664 kb on + strandat 4193.664 kb on + strandat 4193.665 kb on - strandat 4193.665 kb on - strandat 4193.665 kb on - strandat 4193.665 kb on - strandat 4193.665 kb on - strandat 4193.665 kb on - strandat 4193.670 kb on - strandat 4193.679 kb on + strandat 4193.679 kb on + strandat 4193.679 kb on + strandat 4193.680 kb on - strandat 4193.680 kb on - strandat 4193.680 kb on - strandat 4193.680 kb on - strandat 4193.948 kb on + strand, within AO353_19120at 4193.948 kb on + strand, within AO353_19120at 4193.948 kb on + strand, within AO353_19120at 4193.948 kb on + strand, within AO353_19120at 4193.949 kb on - strand, within AO353_19120at 4193.949 kb on - strand, within AO353_19120at 4193.949 kb on - strand, within AO353_19120at 4194.096 kb on + strand, within AO353_19120at 4194.096 kb on + strand, within AO353_19120at 4194.096 kb on + strand, within AO353_19120at 4194.097 kb on - strand, within AO353_19120at 4194.117 kb on - strand, within AO353_19120at 4194.146 kb on + strand, within AO353_19120at 4194.146 kb on + strand, within AO353_19120at 4194.146 kb on + strand, within AO353_19120at 4194.146 kb on + strand, within AO353_19120at 4194.146 kb on + strand, within AO353_19120at 4194.146 kb on + strand, within AO353_19120at 4194.146 kb on + strand, within AO353_19120at 4194.146 kb on + strand, within AO353_19120at 4194.146 kb on + strand, within AO353_19120at 4194.146 kb on + strand, within AO353_19120at 4194.146 kb on + strand, within AO353_19120at 4194.146 kb on + strand, within AO353_19120at 4194.146 kb on + strand, within AO353_19120at 4194.146 kb on + strand, within AO353_19120at 4194.146 kb on + strand, within AO353_19120at 4194.146 kb on + strand, within AO353_19120at 4194.146 kb on + strand, within AO353_19120at 4194.147 kb on - strand, within AO353_19120at 4194.147 kb on - strand, within AO353_19120at 4194.147 kb on - strand, within AO353_19120at 4194.147 kb on - strand, within AO353_19120at 4194.147 kb on - strand, within AO353_19120at 4194.147 kb on - strand, within AO353_19120at 4194.147 kb on - strand, within AO353_19120at 4194.147 kb on - strand, within AO353_19120at 4194.147 kb on - strand, within AO353_19120at 4194.147 kb on - strand, within AO353_19120at 4194.148 kb on + strand, within AO353_19120at 4194.218 kb on + strand, within AO353_19120at 4194.218 kb on + strand, within AO353_19120at 4194.219 kb on - strand, within AO353_19120at 4194.220 kb on + strand, within AO353_19120at 4194.220 kb on + strand, within AO353_19120at 4194.221 kb on - strand, within AO353_19120at 4194.221 kb on - strand, within AO353_19120at 4194.354 kb on + strand, within AO353_19120at 4194.354 kb on + strand, within AO353_19120at 4194.354 kb on + strand, within AO353_19120at 4194.355 kb on - strand, within AO353_19120at 4194.355 kb on - strand, within AO353_19120at 4194.355 kb on - strand, within AO353_19120at 4194.357 kb on + strand, within AO353_19120at 4194.357 kb on + strand, within AO353_19120at 4194.357 kb on + strand, within AO353_19120at 4194.357 kb on + strand, within AO353_19120at 4194.357 kb on + strand, within AO353_19120at 4194.357 kb on + strand, within AO353_19120at 4194.357 kb on + strand, within AO353_19120at 4194.357 kb on + strand, within AO353_19120at 4194.357 kb on + strand, within AO353_19120at 4194.357 kb on + strand, within AO353_19120at 4194.357 kb on + strand, within AO353_19120at 4194.357 kb on + strand, within AO353_19120at 4194.358 kb on - strand, within AO353_19120at 4194.358 kb on - strand, within AO353_19120at 4194.358 kb on - strand, within AO353_19120at 4194.358 kb on - strand, within AO353_19120at 4194.358 kb on - strand, within AO353_19120at 4194.358 kb on - strand, within AO353_19120at 4194.358 kb on - strand, within AO353_19120at 4194.358 kb on - strand, within AO353_19120at 4194.358 kb on - strand, within AO353_19120at 4194.358 kb on - strand, within AO353_19120at 4194.368 kb on + strand, within AO353_19120at 4194.369 kb on - strand, within AO353_19120at 4194.369 kb on - strand, within AO353_19120at 4194.717 kb on - strandat 4195.365 kb on + strand, within AO353_19125at 4195.366 kb on - strand, within AO353_19125at 4195.366 kb on - strand, within AO353_19125at 4195.500 kb on - strandat 4195.500 kb on - strandat 4195.539 kb on + strandat 4195.539 kb on + strandat 4195.540 kb on - strandat 4195.540 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Nalidixic 0.004 mg/ml
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4,192,869 + AO353_19115 0.43 -1.5
4,192,869 + AO353_19115 0.43 -0.5
4,192,869 + AO353_19115 0.43 -1.0
4,192,869 + AO353_19115 0.43 +1.2
4,192,869 + AO353_19115 0.43 -0.8
4,192,870 - AO353_19115 0.43 +2.6
4,192,870 - AO353_19115 0.43 +1.5
4,192,870 - AO353_19115 0.43 -1.2
4,192,872 + AO353_19115 0.44 +0.1
4,192,873 - AO353_19115 0.44 -2.1
4,192,873 - AO353_19115 0.44 -0.1
4,192,873 - AO353_19115 0.44 -1.5
4,192,898 + AO353_19115 0.45 -0.5
4,192,914 + AO353_19115 0.47 -0.1
4,192,914 + AO353_19115 0.47 +1.3
4,192,914 + AO353_19115 0.47 +0.7
4,192,915 - AO353_19115 0.47 +1.0
4,192,915 - AO353_19115 0.47 +0.9
4,192,915 - AO353_19115 0.47 +2.2
4,192,915 - AO353_19115 0.47 +1.2
4,193,037 + AO353_19115 0.56 +0.9
4,193,038 - AO353_19115 0.56 +0.0
4,193,083 + AO353_19115 0.59 +0.6
4,193,083 + AO353_19115 0.59 +1.0
4,193,083 + AO353_19115 0.59 +0.9
4,193,083 + AO353_19115 0.59 +0.4
4,193,084 - AO353_19115 0.59 +1.9
4,193,084 - AO353_19115 0.59 -0.3
4,193,084 - AO353_19115 0.59 +1.2
4,193,084 - AO353_19115 0.59 +0.1
4,193,084 - AO353_19115 0.59 -2.1
4,193,084 - AO353_19115 0.59 +1.9
4,193,160 + AO353_19115 0.65 -1.7
4,193,308 + AO353_19115 0.76 -1.1
4,193,308 + AO353_19115 0.76 +0.9
4,193,321 + AO353_19115 0.77 +1.0
4,193,321 + AO353_19115 0.77 +0.6
4,193,322 - AO353_19115 0.77 +0.9
4,193,523 + -0.1
4,193,524 - +0.9
4,193,643 - -0.7
4,193,643 - +0.7
4,193,643 - +0.5
4,193,643 - -0.5
4,193,650 + +1.0
4,193,651 - -1.0
4,193,664 + -0.9
4,193,664 + -0.4
4,193,664 + +0.9
4,193,664 + -0.5
4,193,664 + -1.9
4,193,664 + -0.9
4,193,665 - -1.1
4,193,665 - +0.1
4,193,665 - -0.5
4,193,665 - -0.5
4,193,665 - -0.6
4,193,665 - -0.5
4,193,670 - -0.0
4,193,679 + -2.7
4,193,679 + -0.5
4,193,679 + -0.7
4,193,680 - -0.8
4,193,680 - -0.0
4,193,680 - +0.9
4,193,680 - -1.2
4,193,948 + AO353_19120 0.21 +0.2
4,193,948 + AO353_19120 0.21 +0.6
4,193,948 + AO353_19120 0.21 -1.7
4,193,948 + AO353_19120 0.21 +0.5
4,193,949 - AO353_19120 0.21 -0.5
4,193,949 - AO353_19120 0.21 +0.9
4,193,949 - AO353_19120 0.21 +0.9
4,194,096 + AO353_19120 0.41 +2.0
4,194,096 + AO353_19120 0.41 +0.3
4,194,096 + AO353_19120 0.41 -1.5
4,194,097 - AO353_19120 0.41 +0.2
4,194,117 - AO353_19120 0.43 -1.9
4,194,146 + AO353_19120 0.47 +0.2
4,194,146 + AO353_19120 0.47 +0.3
4,194,146 + AO353_19120 0.47 -1.5
4,194,146 + AO353_19120 0.47 -0.4
4,194,146 + AO353_19120 0.47 -0.7
4,194,146 + AO353_19120 0.47 +1.9
4,194,146 + AO353_19120 0.47 +2.0
4,194,146 + AO353_19120 0.47 +0.5
4,194,146 + AO353_19120 0.47 +0.5
4,194,146 + AO353_19120 0.47 -0.0
4,194,146 + AO353_19120 0.47 +0.3
4,194,146 + AO353_19120 0.47 +1.1
4,194,146 + AO353_19120 0.47 +2.5
4,194,146 + AO353_19120 0.47 +0.3
4,194,146 + AO353_19120 0.47 -1.0
4,194,146 + AO353_19120 0.47 -0.5
4,194,146 + AO353_19120 0.47 +0.9
4,194,147 - AO353_19120 0.47 -0.1
4,194,147 - AO353_19120 0.47 -1.1
4,194,147 - AO353_19120 0.47 +0.9
4,194,147 - AO353_19120 0.47 -0.4
4,194,147 - AO353_19120 0.47 +0.9
4,194,147 - AO353_19120 0.47 +1.4
4,194,147 - AO353_19120 0.47 +0.3
4,194,147 - AO353_19120 0.47 -0.9
4,194,147 - AO353_19120 0.47 +1.1
4,194,147 - AO353_19120 0.47 -2.1
4,194,148 + AO353_19120 0.47 +1.2
4,194,218 + AO353_19120 0.57 -0.5
4,194,218 + AO353_19120 0.57 +0.2
4,194,219 - AO353_19120 0.57 -0.8
4,194,220 + AO353_19120 0.57 +0.5
4,194,220 + AO353_19120 0.57 -2.5
4,194,221 - AO353_19120 0.57 -0.5
4,194,221 - AO353_19120 0.57 -1.1
4,194,354 + AO353_19120 0.75 +0.9
4,194,354 + AO353_19120 0.75 +1.4
4,194,354 + AO353_19120 0.75 +0.9
4,194,355 - AO353_19120 0.75 +0.7
4,194,355 - AO353_19120 0.75 +0.5
4,194,355 - AO353_19120 0.75 +0.1
4,194,357 + AO353_19120 0.75 -1.5
4,194,357 + AO353_19120 0.75 +0.1
4,194,357 + AO353_19120 0.75 +1.2
4,194,357 + AO353_19120 0.75 +0.3
4,194,357 + AO353_19120 0.75 +2.5
4,194,357 + AO353_19120 0.75 -1.6
4,194,357 + AO353_19120 0.75 +0.9
4,194,357 + AO353_19120 0.75 +1.5
4,194,357 + AO353_19120 0.75 +0.1
4,194,357 + AO353_19120 0.75 +0.3
4,194,357 + AO353_19120 0.75 -0.1
4,194,357 + AO353_19120 0.75 +0.1
4,194,358 - AO353_19120 0.75 +0.3
4,194,358 - AO353_19120 0.75 -1.4
4,194,358 - AO353_19120 0.75 -0.1
4,194,358 - AO353_19120 0.75 -0.3
4,194,358 - AO353_19120 0.75 +0.2
4,194,358 - AO353_19120 0.75 -0.7
4,194,358 - AO353_19120 0.75 -0.3
4,194,358 - AO353_19120 0.75 -1.1
4,194,358 - AO353_19120 0.75 +1.1
4,194,358 - AO353_19120 0.75 +0.0
4,194,368 + AO353_19120 0.77 +0.4
4,194,369 - AO353_19120 0.77 -0.9
4,194,369 - AO353_19120 0.77 +0.3
4,194,717 - -2.3
4,195,365 + AO353_19125 0.84 +1.5
4,195,366 - AO353_19125 0.84 -2.5
4,195,366 - AO353_19125 0.84 +1.9
4,195,500 - +0.9
4,195,500 - -0.5
4,195,539 + +1.2
4,195,539 + +1.3
4,195,540 - -0.9
4,195,540 - +1.9

Or see this region's nucleotide sequence