Experiment: Nalidixic 0.004 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AO353_18760 and AO353_18765 are separated by 554 nucleotides AO353_18765 and AO353_18770 are separated by 420 nucleotides
AO353_18760: AO353_18760 - flagellar biosynthetic protein FlhB, at 4,124,476 to 4,125,615
_18760
AO353_18765: AO353_18765 - hypothetical protein, at 4,126,170 to 4,126,409
_18765
AO353_18770: AO353_18770 - flagellar biosynthesis protein FlhA, at 4,126,830 to 4,128,959
_18770
Position (kb) 4126
4127 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 4125.313 kb on + strand, within AO353_18760 at 4125.313 kb on + strand, within AO353_18760 at 4125.313 kb on + strand, within AO353_18760 at 4125.313 kb on + strand, within AO353_18760 at 4125.313 kb on + strand, within AO353_18760 at 4125.313 kb on + strand, within AO353_18760 at 4125.313 kb on + strand, within AO353_18760 at 4125.314 kb on - strand, within AO353_18760 at 4125.314 kb on - strand, within AO353_18760 at 4125.314 kb on - strand, within AO353_18760 at 4125.399 kb on + strand, within AO353_18760 at 4125.400 kb on - strand, within AO353_18760 at 4125.445 kb on + strand, within AO353_18760 at 4125.445 kb on + strand, within AO353_18760 at 4125.446 kb on - strand, within AO353_18760 at 4125.446 kb on - strand, within AO353_18760 at 4125.446 kb on - strand, within AO353_18760 at 4125.449 kb on - strand, within AO353_18760 at 4125.449 kb on - strand, within AO353_18760 at 4125.449 kb on - strand, within AO353_18760 at 4125.449 kb on - strand, within AO353_18760 at 4125.449 kb on - strand, within AO353_18760 at 4125.487 kb on + strand, within AO353_18760 at 4125.487 kb on + strand, within AO353_18760 at 4125.487 kb on + strand, within AO353_18760 at 4125.487 kb on + strand, within AO353_18760 at 4125.514 kb on + strand at 4125.514 kb on + strand at 4125.515 kb on - strand at 4125.515 kb on - strand at 4125.520 kb on + strand at 4125.570 kb on + strand at 4125.622 kb on + strand at 4125.622 kb on + strand at 4125.622 kb on + strand at 4125.622 kb on + strand at 4125.622 kb on + strand at 4125.622 kb on + strand at 4125.623 kb on - strand at 4125.623 kb on - strand at 4125.623 kb on - strand at 4125.693 kb on + strand at 4125.693 kb on + strand at 4125.693 kb on + strand at 4125.693 kb on + strand at 4125.693 kb on + strand at 4125.693 kb on + strand at 4125.694 kb on - strand at 4125.694 kb on - strand at 4125.694 kb on - strand at 4125.694 kb on - strand at 4125.694 kb on - strand at 4125.694 kb on - strand at 4125.694 kb on - strand at 4125.695 kb on + strand at 4125.695 kb on + strand at 4125.695 kb on + strand at 4125.695 kb on + strand at 4125.695 kb on + strand at 4125.695 kb on + strand at 4125.696 kb on - strand at 4125.696 kb on - strand at 4125.797 kb on + strand at 4125.797 kb on + strand at 4126.123 kb on + strand at 4126.123 kb on + strand at 4126.123 kb on + strand at 4126.123 kb on + strand at 4126.123 kb on + strand at 4126.123 kb on + strand at 4126.123 kb on + strand at 4126.123 kb on + strand at 4126.124 kb on - strand at 4126.124 kb on - strand at 4126.124 kb on - strand at 4126.124 kb on - strand at 4126.124 kb on - strand at 4126.124 kb on - strand at 4126.124 kb on - strand at 4126.124 kb on - strand at 4126.171 kb on + strand at 4126.171 kb on + strand at 4126.171 kb on + strand at 4126.171 kb on + strand at 4126.171 kb on + strand at 4126.171 kb on + strand at 4126.171 kb on + strand at 4126.171 kb on + strand at 4126.171 kb on + strand at 4126.172 kb on - strand at 4126.172 kb on - strand at 4126.172 kb on - strand at 4126.172 kb on - strand at 4126.206 kb on + strand, within AO353_18765 at 4126.207 kb on - strand, within AO353_18765 at 4126.255 kb on + strand, within AO353_18765 at 4126.255 kb on + strand, within AO353_18765 at 4126.255 kb on + strand, within AO353_18765 at 4126.255 kb on + strand, within AO353_18765 at 4126.256 kb on - strand, within AO353_18765 at 4126.256 kb on - strand, within AO353_18765 at 4126.256 kb on - strand, within AO353_18765 at 4126.438 kb on + strand at 4126.439 kb on - strand at 4126.846 kb on + strand at 4126.846 kb on + strand at 4126.847 kb on - strand at 4126.847 kb on - strand at 4126.847 kb on - strand at 4127.019 kb on + strand at 4127.019 kb on + strand at 4127.192 kb on + strand, within AO353_18770 at 4127.196 kb on + strand, within AO353_18770 at 4127.196 kb on + strand, within AO353_18770 at 4127.196 kb on + strand, within AO353_18770 at 4127.196 kb on + strand, within AO353_18770 at 4127.196 kb on + strand, within AO353_18770 at 4127.196 kb on + strand, within AO353_18770 at 4127.196 kb on + strand, within AO353_18770 at 4127.196 kb on + strand, within AO353_18770 at 4127.196 kb on + strand, within AO353_18770 at 4127.196 kb on + strand, within AO353_18770 at 4127.196 kb on + strand, within AO353_18770 at 4127.197 kb on - strand, within AO353_18770 at 4127.197 kb on - strand, within AO353_18770 at 4127.197 kb on - strand, within AO353_18770 at 4127.197 kb on - strand, within AO353_18770 at 4127.197 kb on - strand, within AO353_18770 at 4127.197 kb on - strand, within AO353_18770 at 4127.197 kb on - strand, within AO353_18770 at 4127.197 kb on - strand, within AO353_18770 at 4127.197 kb on - strand, within AO353_18770 at 4127.197 kb on - strand, within AO353_18770 at 4127.207 kb on + strand, within AO353_18770 at 4127.294 kb on + strand, within AO353_18770 at 4127.384 kb on + strand, within AO353_18770
Per-strain Table
Position Strand Gene LocusTag Fraction Nalidixic 0.004 mg/ml remove 4,125,313 + AO353_18760 0.73 -0.9 4,125,313 + AO353_18760 0.73 -0.7 4,125,313 + AO353_18760 0.73 +0.2 4,125,313 + AO353_18760 0.73 +0.9 4,125,313 + AO353_18760 0.73 -0.8 4,125,313 + AO353_18760 0.73 +0.1 4,125,313 + AO353_18760 0.73 +1.3 4,125,314 - AO353_18760 0.74 -0.1 4,125,314 - AO353_18760 0.74 -1.1 4,125,314 - AO353_18760 0.74 -1.3 4,125,399 + AO353_18760 0.81 -0.4 4,125,400 - AO353_18760 0.81 -0.4 4,125,445 + AO353_18760 0.85 +0.8 4,125,445 + AO353_18760 0.85 +0.9 4,125,446 - AO353_18760 0.85 +0.9 4,125,446 - AO353_18760 0.85 +2.1 4,125,446 - AO353_18760 0.85 -0.6 4,125,449 - AO353_18760 0.85 -0.1 4,125,449 - AO353_18760 0.85 -0.7 4,125,449 - AO353_18760 0.85 -0.1 4,125,449 - AO353_18760 0.85 +1.2 4,125,449 - AO353_18760 0.85 -1.1 4,125,487 + AO353_18760 0.89 +0.1 4,125,487 + AO353_18760 0.89 +1.3 4,125,487 + AO353_18760 0.89 +0.7 4,125,487 + AO353_18760 0.89 +0.3 4,125,514 + -0.3 4,125,514 + +1.3 4,125,515 - -0.9 4,125,515 - +0.6 4,125,520 + +0.2 4,125,570 + +2.9 4,125,622 + +0.3 4,125,622 + -0.1 4,125,622 + -0.4 4,125,622 + -0.3 4,125,622 + -1.7 4,125,622 + +0.3 4,125,623 - -2.1 4,125,623 - +0.5 4,125,623 - -2.1 4,125,693 + -0.5 4,125,693 + -0.7 4,125,693 + -1.2 4,125,693 + +0.3 4,125,693 + +0.6 4,125,693 + -0.3 4,125,694 - -3.4 4,125,694 - +0.6 4,125,694 - -0.7 4,125,694 - +2.9 4,125,694 - -0.9 4,125,694 - -0.4 4,125,694 - -1.1 4,125,695 + +0.5 4,125,695 + -0.7 4,125,695 + -0.6 4,125,695 + -0.2 4,125,695 + -1.2 4,125,695 + -0.4 4,125,696 - +0.9 4,125,696 - +0.2 4,125,797 + -0.1 4,125,797 + +1.1 4,126,123 + -0.3 4,126,123 + -0.7 4,126,123 + +0.7 4,126,123 + +0.7 4,126,123 + +0.2 4,126,123 + -0.1 4,126,123 + -1.9 4,126,123 + +0.9 4,126,124 - +0.1 4,126,124 - -0.6 4,126,124 - -0.4 4,126,124 - -1.1 4,126,124 - -1.0 4,126,124 - -0.3 4,126,124 - -1.3 4,126,124 - -0.7 4,126,171 + -0.1 4,126,171 + +1.1 4,126,171 + +0.9 4,126,171 + +0.2 4,126,171 + +0.6 4,126,171 + +0.1 4,126,171 + +1.3 4,126,171 + +2.7 4,126,171 + -1.1 4,126,172 - -0.9 4,126,172 - +0.9 4,126,172 - -0.4 4,126,172 - +0.5 4,126,206 + AO353_18765 0.15 -1.3 4,126,207 - AO353_18765 0.15 -2.9 4,126,255 + AO353_18765 0.35 -1.1 4,126,255 + AO353_18765 0.35 +0.7 4,126,255 + AO353_18765 0.35 +0.2 4,126,255 + AO353_18765 0.35 -0.1 4,126,256 - AO353_18765 0.36 +0.0 4,126,256 - AO353_18765 0.36 -1.4 4,126,256 - AO353_18765 0.36 -0.8 4,126,438 + -0.1 4,126,439 - +0.3 4,126,846 + -1.1 4,126,846 + -2.8 4,126,847 - -1.6 4,126,847 - -0.4 4,126,847 - +1.9 4,127,019 + -0.4 4,127,019 + -0.2 4,127,192 + AO353_18770 0.17 +0.8 4,127,196 + AO353_18770 0.17 -0.1 4,127,196 + AO353_18770 0.17 +0.6 4,127,196 + AO353_18770 0.17 -1.1 4,127,196 + AO353_18770 0.17 -0.1 4,127,196 + AO353_18770 0.17 +1.9 4,127,196 + AO353_18770 0.17 -2.4 4,127,196 + AO353_18770 0.17 -1.5 4,127,196 + AO353_18770 0.17 +0.1 4,127,196 + AO353_18770 0.17 +1.0 4,127,196 + AO353_18770 0.17 +0.9 4,127,196 + AO353_18770 0.17 +1.2 4,127,197 - AO353_18770 0.17 -0.3 4,127,197 - AO353_18770 0.17 -0.6 4,127,197 - AO353_18770 0.17 +0.2 4,127,197 - AO353_18770 0.17 +0.2 4,127,197 - AO353_18770 0.17 -0.2 4,127,197 - AO353_18770 0.17 +0.6 4,127,197 - AO353_18770 0.17 +0.4 4,127,197 - AO353_18770 0.17 -0.1 4,127,197 - AO353_18770 0.17 -0.3 4,127,197 - AO353_18770 0.17 -0.2 4,127,207 + AO353_18770 0.18 +0.6 4,127,294 + AO353_18770 0.22 -1.9 4,127,384 + AO353_18770 0.26 -0.2
Or see this region's nucleotide sequence