Strain Fitness in Pseudomonas fluorescens FW300-N2E3 around AO353_06840

Experiment: Nalidixic 0.004 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Nalidixic 0.004 mg/ml
1,518,068	+		AO353_06830	0.52	+1.0
1,518,069	-		AO353_06830	0.52	+0.5
1,518,069	-		AO353_06830	0.52	+1.5
1,518,158	-		AO353_06830	0.73	-0.8
1,518,206	+		AO353_06830	0.84	-0.1
1,518,206	+		AO353_06830	0.84	-1.1
1,518,206	+		AO353_06830	0.84	+0.6
1,518,207	-		AO353_06830	0.84	+1.6
1,518,207	-		AO353_06830	0.84	-1.1
1,518,207	-		AO353_06830	0.84	-0.8
1,518,207	-		AO353_06830	0.84	+1.2
1,518,207	-		AO353_06830	0.84	+1.1
1,518,309	+				-0.6
1,518,309	+				-1.3
1,518,309	+				+0.4
1,518,309	+				-0.3
1,518,309	+				+0.4
1,518,309	+				+0.2
1,518,309	+				-1.1
1,518,309	+				+1.1
1,518,310	-				+0.2
1,518,310	-				+0.7
1,518,310	-				+0.8
1,518,310	-				-0.2
1,518,378	+		AO353_06835	0.12	-0.2
1,518,379	-		AO353_06835	0.12	-0.5
1,518,462	+		AO353_06835	0.23	+0.5
1,518,462	+		AO353_06835	0.23	+1.2
1,518,462	+		AO353_06835	0.23	+0.5
1,518,462	+		AO353_06835	0.23	-0.8
1,518,462	+		AO353_06835	0.23	-0.4
1,518,462	+		AO353_06835	0.23	-2.2
1,518,463	-		AO353_06835	0.23	-0.3
1,518,463	-		AO353_06835	0.23	+0.1
1,518,463	-		AO353_06835	0.23	-0.4
1,518,504	+		AO353_06835	0.29	+0.5
1,518,504	+		AO353_06835	0.29	+0.8
1,518,504	+		AO353_06835	0.29	+1.8
1,518,504	+		AO353_06835	0.29	+0.8
1,518,505	-		AO353_06835	0.29	+0.9
1,518,505	-		AO353_06835	0.29	-0.7
1,518,505	-		AO353_06835	0.29	+0.9
1,518,505	-		AO353_06835	0.29	-1.0
1,518,756	+		AO353_06835	0.63	-0.2
1,518,756	+		AO353_06835	0.63	+0.0
1,518,756	+		AO353_06835	0.63	-0.2
1,518,756	+		AO353_06835	0.63	+0.6
1,518,756	+		AO353_06835	0.63	+0.7
1,518,756	+		AO353_06835	0.63	-0.9
1,518,757	-		AO353_06835	0.64	-2.1
1,518,757	-		AO353_06835	0.64	+0.8
1,518,757	-		AO353_06835	0.64	+0.2
1,518,757	-		AO353_06835	0.64	+3.7
1,518,757	-		AO353_06835	0.64	+0.2
1,518,757	-		AO353_06835	0.64	+0.1
1,518,801	+		AO353_06835	0.70	-1.8
1,518,801	+		AO353_06835	0.70	+0.2
1,518,802	-		AO353_06835	0.70	-1.3
1,518,802	-		AO353_06835	0.70	-1.1
1,518,802	-		AO353_06835	0.70	-0.7
1,518,870	+		AO353_06835	0.79	+0.7
1,518,871	-		AO353_06835	0.79	+0.5
1,518,871	-		AO353_06835	0.79	-0.3
1,518,871	-		AO353_06835	0.79	-0.1
1,518,871	-		AO353_06835	0.79	-0.3
1,518,871	-		AO353_06835	0.79	+0.7
1,518,893	+		AO353_06835	0.82	-0.8
1,518,893	+		AO353_06835	0.82	-0.2
1,518,893	+		AO353_06835	0.82	+1.2
1,518,894	-		AO353_06835	0.82	+0.6
1,518,894	-		AO353_06835	0.82	-0.8
1,518,894	-		AO353_06835	0.82	-0.1
1,518,894	-		AO353_06835	0.82	-1.2
1,518,894	-		AO353_06835	0.82	-1.3
1,519,021	-				+0.7
1,519,143	+				-0.3
1,519,144	-				+1.2
1,519,144	-				+0.8
1,519,146	+				+0.6
1,519,146	+				+1.7
1,519,146	+				+0.2
1,519,147	-				+1.2
1,519,350	+		AO353_06840	0.27	-0.6
1,519,350	+		AO353_06840	0.27	+0.5
1,519,350	+		AO353_06840	0.27	+0.2
1,519,350	+		AO353_06840	0.27	+0.6
1,519,350	+		AO353_06840	0.27	+0.2
1,519,351	-		AO353_06840	0.27	-0.3
1,519,351	-		AO353_06840	0.27	-0.1
1,519,351	-		AO353_06840	0.27	-0.5
1,519,351	-		AO353_06840	0.27	+0.2
1,519,389	+		AO353_06840	0.31	+0.4
1,519,389	+		AO353_06840	0.31	+1.0
1,519,389	+		AO353_06840	0.31	+0.1
1,519,390	-		AO353_06840	0.31	-0.6
1,519,390	-		AO353_06840	0.31	+1.0
1,519,390	-		AO353_06840	0.31	-0.9
1,519,390	-		AO353_06840	0.31	+0.5
1,519,410	+		AO353_06840	0.32	-0.4
1,519,410	+		AO353_06840	0.32	-0.5
1,519,410	+		AO353_06840	0.32	-0.6
1,519,411	-		AO353_06840	0.32	-0.5
1,519,411	-		AO353_06840	0.32	-2.2
1,519,466	-		AO353_06840	0.37	+0.5
1,519,551	+		AO353_06840	0.45	+0.2
1,519,551	+		AO353_06840	0.45	-1.2
1,519,551	+		AO353_06840	0.45	-2.5
1,519,552	-		AO353_06840	0.45	+0.9
1,519,599	+		AO353_06840	0.49	-0.1
1,519,599	+		AO353_06840	0.49	-0.0
1,519,599	+		AO353_06840	0.49	-1.6
1,519,599	+		AO353_06840	0.49	-0.8
1,519,600	-		AO353_06840	0.49	+0.2
1,519,600	-		AO353_06840	0.49	+0.1
1,519,600	-		AO353_06840	0.49	+0.2
1,519,600	-		AO353_06840	0.49	+1.2
1,519,859	+		AO353_06840	0.71	+0.7
1,519,859	+		AO353_06840	0.71	-0.8
1,519,859	+		AO353_06840	0.71	-0.5
1,519,859	+		AO353_06840	0.71	-0.6
1,519,860	-		AO353_06840	0.71	+1.7
1,519,860	-		AO353_06840	0.71	-0.3
1,519,860	-		AO353_06840	0.71	+0.2
1,519,996	+		AO353_06840	0.83	-0.5
1,519,996	+		AO353_06840	0.83	-1.3
1,520,013	+		AO353_06840	0.84	-0.2
1,520,073	+		AO353_06840	0.90	-0.9
1,520,073	+		AO353_06840	0.90	+0.2
1,520,073	+		AO353_06840	0.90	+1.2
1,520,073	+		AO353_06840	0.90	-1.0
1,520,073	+		AO353_06840	0.90	+0.2
1,520,073	+		AO353_06840	0.90	-1.3
1,520,073	+				+1.7
1,520,073	+		AO353_06840	0.90	-0.2
1,520,073	+		AO353_06840	0.90	-0.7
1,520,074	-		AO353_06840	0.90	-1.1
1,520,074	-		AO353_06840	0.90	+0.0
1,520,074	-		AO353_06840	0.90	+0.6
1,520,199	+				+2.0
1,520,199	+				+0.2
1,520,199	+				-0.3
1,520,199	+				-0.4
1,520,199	+				-0.8
1,520,199	+				-0.5
1,520,200	-				+0.0
1,520,200	-				-2.3
1,520,200	-				+0.8
1,520,200	-				+1.8
1,520,200	-				+1.2
1,520,200	-				-0.9
1,520,200	-				-0.8
1,520,200	-				+0.4
1,520,200	-				-1.9
1,520,200	-				-0.1
1,520,200	-				+0.2
1,520,200	-				+0.2
1,520,200	-				-0.8
1,520,200	-				-0.1
1,520,200	-				+1.1
1,520,200	-				-0.7
1,520,200	-				-1.3
1,520,200	-				+0.6
1,520,200	-				-0.5
1,520,234	-				-1.1
1,520,258	+				-0.3
1,520,258	+				+0.7
1,520,258	+				-1.1
1,520,258	+				-0.8
1,520,258	+				-1.3
1,520,258	+				+0.7
1,520,258	+				+0.5
1,520,259	-				+0.2
1,520,259	-				-1.0
1,520,259	-				-0.0
1,520,259	-				+1.7
1,520,259	-				-1.1
1,520,812	-				+0.1
1,520,874	-				-0.7
1,520,874	-				+1.0
1,520,874	-				+1.5
1,520,874	-				+1.2
1,520,896	-				-0.6
1,520,896	-				+0.0
1,520,896	-				+1.2
1,520,896	-				-0.8
1,520,896	-				-1.8
1,520,896	-				+0.5
1,520,896	-				+1.2
1,521,019	-		AO353_06850	0.15	+0.1
1,521,019	-		AO353_06850	0.15	+1.2
1,521,019	-		AO353_06850	0.15	-0.9
1,521,019	-		AO353_06850	0.15	-1.1
1,521,168	+		AO353_06850	0.26	-1.7
1,521,169	-		AO353_06850	0.26	-2.5