Strain Fitness in Pseudomonas fluorescens FW300-N2E3 around AO353_04190

Experiment: Nalidixic 0.004 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAO353_04185 and AO353_04190 are separated by 336 nucleotidesAO353_04190 and AO353_04195 are separated by 75 nucleotides AO353_04185: AO353_04185 - DeoR family transcriptional regulator, at 897,284 to 898,039 _04185 AO353_04190: AO353_04190 - glycerol-3-phosphate dehydrogenase, at 898,376 to 899,914 _04190 AO353_04195: AO353_04195 - hypothetical protein, at 899,990 to 901,267 _04195 Position (kb) 898 899 900Strain fitness (log2 ratio) -2 -1 0 1 2at 897.376 kb on + strand, within AO353_04185at 897.376 kb on + strand, within AO353_04185at 897.377 kb on - strand, within AO353_04185at 897.377 kb on - strand, within AO353_04185at 897.377 kb on - strand, within AO353_04185at 897.400 kb on + strand, within AO353_04185at 897.401 kb on - strand, within AO353_04185at 897.455 kb on + strand, within AO353_04185at 897.482 kb on + strand, within AO353_04185at 897.482 kb on + strand, within AO353_04185at 897.647 kb on - strand, within AO353_04185at 897.846 kb on + strand, within AO353_04185at 897.847 kb on - strand, within AO353_04185at 897.847 kb on - strand, within AO353_04185at 898.045 kb on + strandat 898.045 kb on + strandat 898.045 kb on + strandat 898.045 kb on + strandat 898.045 kb on + strandat 898.045 kb on + strandat 898.045 kb on + strandat 898.045 kb on + strandat 898.045 kb on + strandat 898.045 kb on + strandat 898.045 kb on + strandat 898.046 kb on - strandat 898.046 kb on - strandat 898.046 kb on - strandat 898.046 kb on - strandat 898.046 kb on - strandat 898.167 kb on - strandat 898.228 kb on + strandat 898.228 kb on + strandat 898.228 kb on + strandat 898.228 kb on + strandat 898.228 kb on + strandat 898.229 kb on - strandat 898.229 kb on - strandat 898.305 kb on - strandat 898.311 kb on + strandat 898.333 kb on + strandat 898.352 kb on + strandat 898.352 kb on + strandat 898.392 kb on + strandat 898.392 kb on + strandat 898.393 kb on - strandat 898.396 kb on + strandat 898.396 kb on + strandat 898.396 kb on + strandat 898.396 kb on + strandat 898.397 kb on - strandat 898.418 kb on + strandat 898.418 kb on + strandat 898.419 kb on - strandat 898.528 kb on + strandat 898.528 kb on + strandat 898.571 kb on + strand, within AO353_04190at 899.519 kb on + strand, within AO353_04190at 899.519 kb on + strand, within AO353_04190at 899.700 kb on + strand, within AO353_04190at 899.867 kb on + strandat 899.867 kb on + strandat 899.867 kb on + strandat 899.992 kb on - strandat 900.006 kb on + strandat 900.007 kb on - strandat 900.105 kb on + strandat 900.105 kb on + strandat 900.106 kb on - strandat 900.106 kb on - strandat 900.106 kb on - strandat 900.106 kb on - strandat 900.215 kb on - strand, within AO353_04195at 900.215 kb on - strand, within AO353_04195at 900.234 kb on + strand, within AO353_04195at 900.234 kb on + strand, within AO353_04195at 900.234 kb on + strand, within AO353_04195at 900.234 kb on + strand, within AO353_04195at 900.234 kb on + strand, within AO353_04195at 900.234 kb on + strand, within AO353_04195at 900.234 kb on + strand, within AO353_04195at 900.234 kb on + strand, within AO353_04195at 900.234 kb on + strand, within AO353_04195at 900.234 kb on + strand, within AO353_04195at 900.234 kb on + strand, within AO353_04195at 900.235 kb on - strand, within AO353_04195at 900.235 kb on - strand, within AO353_04195at 900.235 kb on - strand, within AO353_04195at 900.235 kb on - strand, within AO353_04195at 900.235 kb on - strand, within AO353_04195at 900.235 kb on - strand, within AO353_04195at 900.235 kb on - strand, within AO353_04195at 900.235 kb on - strand, within AO353_04195at 900.235 kb on - strand, within AO353_04195at 900.240 kb on + strand, within AO353_04195at 900.240 kb on + strand, within AO353_04195at 900.240 kb on + strand, within AO353_04195at 900.240 kb on + strand, within AO353_04195at 900.241 kb on - strand, within AO353_04195at 900.241 kb on - strand, within AO353_04195at 900.250 kb on + strand, within AO353_04195at 900.251 kb on - strand, within AO353_04195at 900.251 kb on - strand, within AO353_04195at 900.251 kb on - strand, within AO353_04195at 900.264 kb on + strand, within AO353_04195at 900.265 kb on - strand, within AO353_04195at 900.331 kb on + strand, within AO353_04195at 900.331 kb on + strand, within AO353_04195at 900.332 kb on - strand, within AO353_04195at 900.332 kb on - strand, within AO353_04195at 900.332 kb on - strand, within AO353_04195at 900.333 kb on + strand, within AO353_04195at 900.333 kb on + strand, within AO353_04195at 900.333 kb on + strand, within AO353_04195at 900.333 kb on + strand, within AO353_04195at 900.333 kb on + strand, within AO353_04195at 900.333 kb on + strand, within AO353_04195at 900.333 kb on + strand, within AO353_04195at 900.334 kb on - strand, within AO353_04195at 900.334 kb on - strand, within AO353_04195at 900.334 kb on - strand, within AO353_04195at 900.334 kb on - strand, within AO353_04195at 900.334 kb on - strand, within AO353_04195at 900.334 kb on - strand, within AO353_04195at 900.334 kb on - strand, within AO353_04195at 900.334 kb on - strand, within AO353_04195at 900.657 kb on + strand, within AO353_04195at 900.658 kb on - strand, within AO353_04195at 900.658 kb on - strand, within AO353_04195at 900.658 kb on - strand, within AO353_04195at 900.658 kb on - strand, within AO353_04195at 900.834 kb on + strand, within AO353_04195at 900.835 kb on - strand, within AO353_04195at 900.835 kb on - strand, within AO353_04195at 900.906 kb on + strand, within AO353_04195at 900.906 kb on + strand, within AO353_04195

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Per-strain Table

Position Strand Gene LocusTag Fraction Nalidixic 0.004 mg/ml
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897,376 + AO353_04185 0.12 +2.4
897,376 + AO353_04185 0.12 +1.1
897,377 - AO353_04185 0.12 +0.3
897,377 - AO353_04185 0.12 +1.1
897,377 - AO353_04185 0.12 +1.9
897,400 + AO353_04185 0.15 +0.9
897,401 - AO353_04185 0.15 +1.1
897,455 + AO353_04185 0.23 -0.4
897,482 + AO353_04185 0.26 -0.7
897,482 + AO353_04185 0.26 -0.4
897,647 - AO353_04185 0.48 +0.9
897,846 + AO353_04185 0.74 +0.6
897,847 - AO353_04185 0.74 +1.2
897,847 - AO353_04185 0.74 -0.7
898,045 + +0.9
898,045 + -0.7
898,045 + +1.3
898,045 + +1.1
898,045 + +0.3
898,045 + +0.1
898,045 + -0.0
898,045 + -0.2
898,045 + +1.3
898,045 + -1.9
898,045 + -0.3
898,046 - +2.1
898,046 - -0.7
898,046 - -0.8
898,046 - +0.1
898,046 - +0.3
898,167 - +0.5
898,228 + +0.7
898,228 + +0.4
898,228 + -0.2
898,228 + +0.2
898,228 + -1.0
898,229 - +0.1
898,229 - -1.2
898,305 - +0.1
898,311 + +0.1
898,333 + +0.1
898,352 + -0.5
898,352 + -0.5
898,392 + -1.2
898,392 + -0.5
898,393 - -0.9
898,396 + -1.5
898,396 + -1.2
898,396 + -1.5
898,396 + -1.7
898,397 - -0.2
898,418 + -1.7
898,418 + -0.1
898,419 - -0.5
898,528 + +0.1
898,528 + -1.2
898,571 + AO353_04190 0.13 -0.6
899,519 + AO353_04190 0.74 -0.9
899,519 + AO353_04190 0.74 -1.2
899,700 + AO353_04190 0.86 -0.5
899,867 + -0.5
899,867 + +0.3
899,867 + -0.5
899,992 - -0.4
900,006 + -0.3
900,007 - +0.7
900,105 + -0.5
900,105 + +0.9
900,106 - -0.0
900,106 - -1.1
900,106 - +0.1
900,106 - -1.5
900,215 - AO353_04195 0.18 +1.2
900,215 - AO353_04195 0.18 -0.2
900,234 + AO353_04195 0.19 -0.7
900,234 + AO353_04195 0.19 +1.1
900,234 + AO353_04195 0.19 +1.1
900,234 + AO353_04195 0.19 +1.1
900,234 + AO353_04195 0.19 -0.9
900,234 + AO353_04195 0.19 -0.5
900,234 + AO353_04195 0.19 -0.6
900,234 + AO353_04195 0.19 +0.3
900,234 + AO353_04195 0.19 -0.5
900,234 + AO353_04195 0.19 +0.1
900,234 + AO353_04195 0.19 +1.8
900,235 - AO353_04195 0.19 -0.2
900,235 - AO353_04195 0.19 +0.4
900,235 - AO353_04195 0.19 -0.5
900,235 - AO353_04195 0.19 +0.3
900,235 - AO353_04195 0.19 +1.7
900,235 - AO353_04195 0.19 -0.7
900,235 - AO353_04195 0.19 -0.5
900,235 - AO353_04195 0.19 +0.4
900,235 - AO353_04195 0.19 -0.5
900,240 + AO353_04195 0.20 -0.3
900,240 + AO353_04195 0.20 +1.4
900,240 + AO353_04195 0.20 +0.0
900,240 + AO353_04195 0.20 -2.2
900,241 - AO353_04195 0.20 -2.2
900,241 - AO353_04195 0.20 +0.8
900,250 + AO353_04195 0.20 +0.1
900,251 - AO353_04195 0.20 -0.9
900,251 - AO353_04195 0.20 +1.5
900,251 - AO353_04195 0.20 +0.3
900,264 + AO353_04195 0.21 +1.1
900,265 - AO353_04195 0.22 +0.7
900,331 + AO353_04195 0.27 +1.5
900,331 + AO353_04195 0.27 +0.0
900,332 - AO353_04195 0.27 +0.1
900,332 - AO353_04195 0.27 +0.2
900,332 - AO353_04195 0.27 +0.4
900,333 + AO353_04195 0.27 -0.1
900,333 + AO353_04195 0.27 +0.1
900,333 + AO353_04195 0.27 -1.0
900,333 + AO353_04195 0.27 +0.6
900,333 + AO353_04195 0.27 +1.1
900,333 + AO353_04195 0.27 -0.2
900,333 + AO353_04195 0.27 -1.7
900,334 - AO353_04195 0.27 -0.8
900,334 - AO353_04195 0.27 +0.7
900,334 - AO353_04195 0.27 -0.1
900,334 - AO353_04195 0.27 +0.3
900,334 - AO353_04195 0.27 -0.6
900,334 - AO353_04195 0.27 -0.5
900,334 - AO353_04195 0.27 +0.7
900,334 - AO353_04195 0.27 +0.6
900,657 + AO353_04195 0.52 -1.2
900,658 - AO353_04195 0.52 +0.5
900,658 - AO353_04195 0.52 +0.9
900,658 - AO353_04195 0.52 +1.1
900,658 - AO353_04195 0.52 +2.7
900,834 + AO353_04195 0.66 +0.1
900,835 - AO353_04195 0.66 +0.3
900,835 - AO353_04195 0.66 -2.1
900,906 + AO353_04195 0.72 +0.1
900,906 + AO353_04195 0.72 -1.2

Or see this region's nucleotide sequence