Experiment: Nalidixic 0.004 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AO353_03750 and AO353_03755 are separated by 345 nucleotides AO353_03755 and AO353_03760 are separated by 22 nucleotides AO353_03760 and AO353_03765 are separated by 253 nucleotides AO353_03765 and AO353_03770 are separated by 127 nucleotides
AO353_03750: AO353_03750 - hypothetical protein, at 801,890 to 803,221
_03750
AO353_03755: AO353_03755 - hypothetical protein, at 803,567 to 803,956
_03755
AO353_03760: AO353_03760 - pilus assembly protein PilZ, at 803,979 to 804,338
_03760
AO353_03765: AO353_03765 - hypothetical protein, at 804,592 to 804,966
_03765
AO353_03770: AO353_03770 - hypothetical protein, at 805,094 to 805,393
_03770
Position (kb) 803
804
805 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 803.017 kb on - strand, within AO353_03750 at 803.069 kb on + strand, within AO353_03750 at 803.087 kb on + strand, within AO353_03750 at 803.087 kb on + strand, within AO353_03750 at 803.087 kb on + strand, within AO353_03750 at 803.087 kb on + strand, within AO353_03750 at 803.087 kb on + strand, within AO353_03750 at 803.087 kb on + strand, within AO353_03750 at 803.087 kb on + strand, within AO353_03750 at 803.087 kb on + strand, within AO353_03750 at 803.088 kb on - strand at 803.088 kb on - strand at 803.190 kb on - strand at 803.190 kb on - strand at 803.220 kb on - strand at 803.278 kb on + strand at 803.279 kb on - strand at 803.338 kb on + strand at 803.379 kb on + strand at 803.385 kb on + strand at 803.385 kb on + strand at 803.385 kb on + strand at 803.385 kb on + strand at 803.385 kb on + strand at 803.386 kb on - strand at 803.386 kb on - strand at 803.386 kb on - strand at 803.386 kb on - strand at 803.386 kb on - strand at 803.386 kb on - strand at 803.386 kb on - strand at 803.386 kb on - strand at 803.386 kb on - strand at 803.386 kb on - strand at 803.413 kb on + strand at 803.413 kb on + strand at 803.413 kb on + strand at 803.413 kb on + strand at 803.413 kb on + strand at 803.414 kb on - strand at 803.525 kb on + strand at 803.525 kb on + strand at 803.598 kb on - strand at 803.616 kb on - strand, within AO353_03755 at 803.672 kb on + strand, within AO353_03755 at 803.672 kb on + strand, within AO353_03755 at 803.673 kb on - strand, within AO353_03755 at 803.705 kb on + strand, within AO353_03755 at 803.705 kb on + strand, within AO353_03755 at 803.705 kb on + strand, within AO353_03755 at 803.706 kb on - strand, within AO353_03755 at 803.706 kb on - strand, within AO353_03755 at 803.706 kb on - strand, within AO353_03755 at 803.706 kb on - strand, within AO353_03755 at 803.706 kb on - strand, within AO353_03755 at 803.706 kb on - strand, within AO353_03755 at 803.771 kb on + strand, within AO353_03755 at 803.771 kb on + strand, within AO353_03755 at 803.772 kb on - strand, within AO353_03755 at 803.777 kb on + strand, within AO353_03755 at 803.777 kb on + strand, within AO353_03755 at 803.777 kb on + strand, within AO353_03755 at 803.778 kb on - strand, within AO353_03755 at 803.778 kb on - strand, within AO353_03755 at 803.778 kb on - strand, within AO353_03755 at 803.778 kb on - strand, within AO353_03755 at 803.954 kb on + strand at 803.954 kb on + strand at 803.954 kb on + strand at 803.967 kb on + strand at 803.968 kb on - strand at 803.968 kb on - strand at 803.968 kb on - strand at 803.968 kb on - strand at 803.968 kb on - strand at 803.968 kb on - strand at 803.981 kb on - strand at 804.013 kb on + strand at 804.013 kb on + strand at 804.013 kb on + strand at 804.013 kb on + strand at 804.013 kb on + strand at 804.014 kb on - strand at 804.014 kb on - strand at 804.014 kb on - strand at 804.082 kb on + strand, within AO353_03760 at 804.082 kb on + strand, within AO353_03760 at 804.083 kb on - strand, within AO353_03760 at 804.083 kb on - strand, within AO353_03760 at 804.083 kb on - strand, within AO353_03760 at 804.218 kb on + strand, within AO353_03760 at 804.218 kb on + strand, within AO353_03760 at 804.218 kb on + strand, within AO353_03760 at 804.219 kb on - strand, within AO353_03760 at 804.219 kb on - strand, within AO353_03760 at 804.354 kb on + strand at 804.354 kb on + strand at 804.354 kb on + strand at 804.355 kb on - strand at 804.355 kb on - strand at 804.355 kb on - strand at 804.375 kb on + strand at 804.375 kb on + strand at 804.375 kb on + strand at 804.375 kb on + strand at 804.375 kb on + strand at 804.376 kb on - strand at 804.376 kb on - strand at 804.376 kb on - strand at 804.381 kb on + strand at 804.381 kb on + strand at 804.381 kb on + strand at 804.381 kb on + strand at 804.381 kb on + strand at 804.381 kb on + strand at 804.382 kb on - strand at 804.382 kb on - strand at 804.393 kb on + strand at 804.393 kb on + strand at 804.393 kb on + strand at 804.394 kb on - strand at 804.394 kb on - strand at 804.478 kb on + strand at 804.488 kb on + strand at 804.489 kb on - strand at 804.489 kb on - strand at 804.502 kb on + strand at 804.503 kb on - strand at 804.523 kb on + strand at 804.523 kb on + strand at 804.523 kb on + strand at 804.523 kb on + strand at 804.523 kb on + strand at 804.523 kb on + strand at 804.524 kb on - strand at 804.541 kb on + strand at 804.541 kb on + strand at 804.541 kb on + strand at 804.541 kb on + strand at 804.541 kb on + strand at 804.542 kb on - strand at 804.542 kb on - strand at 804.542 kb on - strand at 804.542 kb on - strand at 804.542 kb on - strand at 804.593 kb on + strand at 804.593 kb on + strand at 804.593 kb on + strand at 804.594 kb on - strand at 804.594 kb on - strand at 804.594 kb on - strand at 804.687 kb on - strand, within AO353_03765 at 804.722 kb on + strand, within AO353_03765 at 804.722 kb on + strand, within AO353_03765 at 804.722 kb on + strand, within AO353_03765 at 804.722 kb on + strand, within AO353_03765 at 804.722 kb on + strand, within AO353_03765 at 804.722 kb on + strand, within AO353_03765 at 804.723 kb on - strand, within AO353_03765 at 804.723 kb on - strand, within AO353_03765 at 804.743 kb on + strand, within AO353_03765 at 804.743 kb on + strand, within AO353_03765 at 804.743 kb on + strand, within AO353_03765 at 804.743 kb on + strand, within AO353_03765 at 804.743 kb on + strand, within AO353_03765 at 804.744 kb on - strand, within AO353_03765 at 804.744 kb on - strand, within AO353_03765 at 804.744 kb on - strand, within AO353_03765 at 804.744 kb on - strand, within AO353_03765 at 804.796 kb on + strand, within AO353_03765 at 804.796 kb on + strand, within AO353_03765 at 804.796 kb on + strand, within AO353_03765 at 804.796 kb on + strand, within AO353_03765 at 804.796 kb on + strand, within AO353_03765 at 804.796 kb on + strand, within AO353_03765 at 804.796 kb on + strand at 804.796 kb on + strand, within AO353_03765 at 804.796 kb on + strand, within AO353_03765 at 804.796 kb on + strand, within AO353_03765 at 804.796 kb on + strand, within AO353_03765 at 804.796 kb on + strand, within AO353_03765 at 804.796 kb on + strand, within AO353_03765 at 804.796 kb on + strand, within AO353_03765 at 804.796 kb on + strand, within AO353_03765 at 804.796 kb on + strand, within AO353_03765 at 804.797 kb on - strand, within AO353_03765 at 804.797 kb on - strand, within AO353_03765 at 804.797 kb on - strand, within AO353_03765 at 804.797 kb on - strand, within AO353_03765 at 804.797 kb on - strand, within AO353_03765 at 804.797 kb on - strand, within AO353_03765 at 804.797 kb on - strand, within AO353_03765 at 804.797 kb on - strand, within AO353_03765 at 804.797 kb on - strand, within AO353_03765 at 804.797 kb on - strand, within AO353_03765 at 804.797 kb on - strand, within AO353_03765 at 804.797 kb on - strand, within AO353_03765 at 804.797 kb on - strand, within AO353_03765 at 804.798 kb on + strand, within AO353_03765 at 804.798 kb on + strand, within AO353_03765 at 804.798 kb on + strand, within AO353_03765 at 804.798 kb on + strand, within AO353_03765 at 804.798 kb on + strand, within AO353_03765 at 804.798 kb on + strand, within AO353_03765 at 804.798 kb on + strand, within AO353_03765 at 804.799 kb on - strand, within AO353_03765 at 804.799 kb on - strand, within AO353_03765 at 804.799 kb on - strand, within AO353_03765 at 804.799 kb on - strand, within AO353_03765 at 804.799 kb on - strand, within AO353_03765 at 804.799 kb on - strand, within AO353_03765 at 804.800 kb on + strand, within AO353_03765 at 804.800 kb on + strand, within AO353_03765 at 804.801 kb on - strand, within AO353_03765 at 804.801 kb on - strand, within AO353_03765 at 804.801 kb on - strand, within AO353_03765 at 804.872 kb on + strand, within AO353_03765 at 804.872 kb on + strand, within AO353_03765 at 805.077 kb on - strand at 805.168 kb on + strand, within AO353_03770 at 805.168 kb on + strand, within AO353_03770 at 805.168 kb on + strand, within AO353_03770 at 805.169 kb on - strand, within AO353_03770 at 805.169 kb on - strand, within AO353_03770 at 805.169 kb on - strand, within AO353_03770 at 805.169 kb on - strand, within AO353_03770 at 805.276 kb on + strand, within AO353_03770 at 805.277 kb on - strand, within AO353_03770 at 805.277 kb on - strand, within AO353_03770 at 805.277 kb on - strand, within AO353_03770 at 805.277 kb on - strand, within AO353_03770 at 805.280 kb on - strand, within AO353_03770 at 805.280 kb on - strand, within AO353_03770
Per-strain Table
Position Strand Gene LocusTag Fraction Nalidixic 0.004 mg/ml remove 803,017 - AO353_03750 0.85 +0.5 803,069 + AO353_03750 0.89 +0.3 803,087 + AO353_03750 0.90 +1.0 803,087 + AO353_03750 0.90 -0.2 803,087 + AO353_03750 0.90 -1.8 803,087 + AO353_03750 0.90 -1.8 803,087 + AO353_03750 0.90 +0.0 803,087 + AO353_03750 0.90 -0.5 803,087 + AO353_03750 0.90 +0.8 803,087 + AO353_03750 0.90 -0.2 803,088 - -0.5 803,088 - -1.5 803,190 - -1.1 803,190 - -1.3 803,220 - +0.4 803,278 + +0.0 803,279 - +0.8 803,338 + -0.4 803,379 + -0.5 803,385 + -1.5 803,385 + -0.2 803,385 + +1.0 803,385 + +0.9 803,385 + +2.0 803,386 - -1.0 803,386 - +1.5 803,386 - -0.8 803,386 - -0.4 803,386 - +0.8 803,386 - +0.2 803,386 - -0.8 803,386 - -1.1 803,386 - -1.0 803,386 - -0.4 803,413 + +0.6 803,413 + +1.3 803,413 + -0.1 803,413 + -0.0 803,413 + +1.5 803,414 - +1.0 803,525 + -0.6 803,525 + +0.0 803,598 - +0.0 803,616 - AO353_03755 0.13 +1.2 803,672 + AO353_03755 0.27 -2.0 803,672 + AO353_03755 0.27 -1.8 803,673 - AO353_03755 0.27 +0.8 803,705 + AO353_03755 0.35 +1.4 803,705 + AO353_03755 0.35 +0.7 803,705 + AO353_03755 0.35 +1.2 803,706 - AO353_03755 0.36 +1.5 803,706 - AO353_03755 0.36 -1.7 803,706 - AO353_03755 0.36 -1.6 803,706 - AO353_03755 0.36 -1.0 803,706 - AO353_03755 0.36 -0.0 803,706 - AO353_03755 0.36 -0.3 803,771 + AO353_03755 0.52 -0.3 803,771 + AO353_03755 0.52 -1.6 803,772 - AO353_03755 0.53 +0.5 803,777 + AO353_03755 0.54 -1.0 803,777 + AO353_03755 0.54 -0.8 803,777 + AO353_03755 0.54 +0.0 803,778 - AO353_03755 0.54 -1.5 803,778 - AO353_03755 0.54 -0.3 803,778 - AO353_03755 0.54 +0.2 803,778 - AO353_03755 0.54 -1.3 803,954 + +0.8 803,954 + -0.8 803,954 + -0.5 803,967 + +1.0 803,968 - -0.4 803,968 - +0.2 803,968 - +0.0 803,968 - +0.0 803,968 - -0.6 803,968 - -0.6 803,981 - -1.1 804,013 + -1.0 804,013 + +1.2 804,013 + +1.2 804,013 + -0.9 804,013 + +0.0 804,014 - -0.4 804,014 - -1.0 804,014 - -1.3 804,082 + AO353_03760 0.29 -0.4 804,082 + AO353_03760 0.29 -1.7 804,083 - AO353_03760 0.29 -1.4 804,083 - AO353_03760 0.29 +1.0 804,083 - AO353_03760 0.29 -2.3 804,218 + AO353_03760 0.66 -0.7 804,218 + AO353_03760 0.66 +1.0 804,218 + AO353_03760 0.66 -2.0 804,219 - AO353_03760 0.67 -0.3 804,219 - AO353_03760 0.67 -1.4 804,354 + +1.0 804,354 + +1.0 804,354 + +0.6 804,355 - +0.6 804,355 - +1.0 804,355 - +0.0 804,375 + -0.9 804,375 + -0.1 804,375 + -0.5 804,375 + -1.8 804,375 + -0.8 804,376 - -1.8 804,376 - +0.6 804,376 - -1.3 804,381 + -0.5 804,381 + +0.2 804,381 + +1.0 804,381 + -1.1 804,381 + -1.8 804,381 + -1.0 804,382 - +0.3 804,382 - -0.4 804,393 + +1.0 804,393 + +0.0 804,393 + -1.9 804,394 - +0.0 804,394 - +0.5 804,478 + -1.6 804,488 + -0.1 804,489 - -1.0 804,489 - +0.0 804,502 + +0.0 804,503 - -1.0 804,523 + -2.2 804,523 + +0.6 804,523 + -1.9 804,523 + -0.1 804,523 + +0.8 804,523 + -0.5 804,524 - -0.3 804,541 + +0.0 804,541 + +1.0 804,541 + +3.0 804,541 + +1.0 804,541 + +0.4 804,542 - -1.5 804,542 - +3.0 804,542 - -0.4 804,542 - +0.4 804,542 - -0.5 804,593 + +0.3 804,593 + +2.6 804,593 + -1.5 804,594 - +2.0 804,594 - +1.5 804,594 - -1.4 804,687 - AO353_03765 0.25 -0.3 804,722 + AO353_03765 0.35 +0.7 804,722 + AO353_03765 0.35 +1.0 804,722 + AO353_03765 0.35 -0.8 804,722 + AO353_03765 0.35 +0.8 804,722 + AO353_03765 0.35 -1.0 804,722 + AO353_03765 0.35 +0.0 804,723 - AO353_03765 0.35 -0.5 804,723 - AO353_03765 0.35 -0.2 804,743 + AO353_03765 0.40 +0.0 804,743 + AO353_03765 0.40 -0.3 804,743 + AO353_03765 0.40 +0.3 804,743 + AO353_03765 0.40 +0.8 804,743 + AO353_03765 0.40 +0.5 804,744 - AO353_03765 0.41 -0.5 804,744 - AO353_03765 0.41 -0.5 804,744 - AO353_03765 0.41 +0.2 804,744 - AO353_03765 0.41 +0.0 804,796 + AO353_03765 0.54 +0.8 804,796 + AO353_03765 0.54 -2.1 804,796 + AO353_03765 0.54 -0.5 804,796 + AO353_03765 0.54 -2.1 804,796 + AO353_03765 0.54 -0.3 804,796 + AO353_03765 0.54 -1.1 804,796 + -0.5 804,796 + AO353_03765 0.54 +0.5 804,796 + AO353_03765 0.54 +0.5 804,796 + AO353_03765 0.54 +1.4 804,796 + AO353_03765 0.54 -0.5 804,796 + AO353_03765 0.54 +0.4 804,796 + AO353_03765 0.54 +1.3 804,796 + AO353_03765 0.54 +0.6 804,796 + AO353_03765 0.54 -0.3 804,796 + AO353_03765 0.54 -2.7 804,797 - AO353_03765 0.55 +0.5 804,797 - AO353_03765 0.55 +1.5 804,797 - AO353_03765 0.55 +0.0 804,797 - AO353_03765 0.55 -0.5 804,797 - AO353_03765 0.55 +0.5 804,797 - AO353_03765 0.55 -0.7 804,797 - AO353_03765 0.55 +0.0 804,797 - AO353_03765 0.55 -1.0 804,797 - AO353_03765 0.55 -1.2 804,797 - AO353_03765 0.55 -0.7 804,797 - AO353_03765 0.55 +0.6 804,797 - AO353_03765 0.55 +0.5 804,797 - AO353_03765 0.55 +0.2 804,798 + AO353_03765 0.55 +1.6 804,798 + AO353_03765 0.55 +0.5 804,798 + AO353_03765 0.55 -1.0 804,798 + AO353_03765 0.55 -0.3 804,798 + AO353_03765 0.55 -0.4 804,798 + AO353_03765 0.55 +0.6 804,798 + AO353_03765 0.55 -1.0 804,799 - AO353_03765 0.55 -1.0 804,799 - AO353_03765 0.55 +0.9 804,799 - AO353_03765 0.55 -0.5 804,799 - AO353_03765 0.55 -1.3 804,799 - AO353_03765 0.55 -0.3 804,799 - AO353_03765 0.55 +2.0 804,800 + AO353_03765 0.55 -0.3 804,800 + AO353_03765 0.55 -0.3 804,801 - AO353_03765 0.56 +0.6 804,801 - AO353_03765 0.56 +0.2 804,801 - AO353_03765 0.56 +0.5 804,872 + AO353_03765 0.75 +1.8 804,872 + AO353_03765 0.75 +0.0 805,077 - -0.4 805,168 + AO353_03770 0.25 -0.4 805,168 + AO353_03770 0.25 +0.2 805,168 + AO353_03770 0.25 +0.5 805,169 - AO353_03770 0.25 +1.5 805,169 - AO353_03770 0.25 -2.1 805,169 - AO353_03770 0.25 -0.1 805,169 - AO353_03770 0.25 -1.1 805,276 + AO353_03770 0.61 -0.5 805,277 - AO353_03770 0.61 +0.6 805,277 - AO353_03770 0.61 -0.5 805,277 - AO353_03770 0.61 +0.4 805,277 - AO353_03770 0.61 -1.2 805,280 - AO353_03770 0.62 +0.2 805,280 - AO353_03770 0.62 +1.0
Or see this region's nucleotide sequence