Experiment: Nalidixic 0.004 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AO353_03270 and AO353_03275 are separated by 444 nucleotides AO353_03275 and AO353_03280 are separated by 99 nucleotides AO353_03280 and AO353_03285 are separated by 287 nucleotides
AO353_03270: AO353_03270 - pili assembly chaperone, at 697,272 to 698,591
_03270
AO353_03275: AO353_03275 - LysR family transcriptional regulator, at 699,036 to 699,914
_03275
AO353_03280: AO353_03280 - glutathione S-transferase, at 700,014 to 700,622
_03280
AO353_03285: AO353_03285 - GCN5 family acetyltransferase, at 700,910 to 701,326
_03285
Position (kb) 699
700 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 698.037 kb on + strand, within AO353_03270 at 698.037 kb on + strand, within AO353_03270 at 698.037 kb on + strand, within AO353_03270 at 698.037 kb on + strand, within AO353_03270 at 698.037 kb on + strand, within AO353_03270 at 698.037 kb on + strand, within AO353_03270 at 698.038 kb on - strand, within AO353_03270 at 698.038 kb on - strand, within AO353_03270 at 698.038 kb on - strand, within AO353_03270 at 698.038 kb on - strand, within AO353_03270 at 698.038 kb on - strand, within AO353_03270 at 698.038 kb on - strand, within AO353_03270 at 698.038 kb on - strand, within AO353_03270 at 698.046 kb on - strand, within AO353_03270 at 698.053 kb on + strand, within AO353_03270 at 698.053 kb on + strand, within AO353_03270 at 698.053 kb on + strand, within AO353_03270 at 698.054 kb on - strand, within AO353_03270 at 698.054 kb on - strand, within AO353_03270 at 698.054 kb on - strand, within AO353_03270 at 698.054 kb on - strand, within AO353_03270 at 698.054 kb on - strand, within AO353_03270 at 698.148 kb on + strand, within AO353_03270 at 698.148 kb on + strand, within AO353_03270 at 698.149 kb on - strand, within AO353_03270 at 698.149 kb on - strand, within AO353_03270 at 698.149 kb on - strand, within AO353_03270 at 698.149 kb on - strand, within AO353_03270 at 698.172 kb on - strand, within AO353_03270 at 698.217 kb on + strand, within AO353_03270 at 698.218 kb on - strand, within AO353_03270 at 698.218 kb on - strand, within AO353_03270 at 698.218 kb on - strand, within AO353_03270 at 698.218 kb on - strand, within AO353_03270 at 698.246 kb on + strand, within AO353_03270 at 698.246 kb on + strand, within AO353_03270 at 698.246 kb on + strand, within AO353_03270 at 698.246 kb on + strand, within AO353_03270 at 698.246 kb on + strand, within AO353_03270 at 698.246 kb on + strand, within AO353_03270 at 698.246 kb on + strand, within AO353_03270 at 698.246 kb on + strand, within AO353_03270 at 698.246 kb on + strand, within AO353_03270 at 698.246 kb on + strand, within AO353_03270 at 698.247 kb on - strand, within AO353_03270 at 698.247 kb on - strand, within AO353_03270 at 698.247 kb on - strand, within AO353_03270 at 698.247 kb on - strand, within AO353_03270 at 698.247 kb on - strand, within AO353_03270 at 698.247 kb on - strand, within AO353_03270 at 698.248 kb on + strand, within AO353_03270 at 698.248 kb on + strand, within AO353_03270 at 698.248 kb on + strand, within AO353_03270 at 698.248 kb on + strand, within AO353_03270 at 698.248 kb on + strand, within AO353_03270 at 698.248 kb on + strand, within AO353_03270 at 698.248 kb on + strand, within AO353_03270 at 698.248 kb on + strand, within AO353_03270 at 698.248 kb on + strand, within AO353_03270 at 698.248 kb on + strand, within AO353_03270 at 698.248 kb on + strand, within AO353_03270 at 698.249 kb on - strand, within AO353_03270 at 698.249 kb on - strand, within AO353_03270 at 698.249 kb on - strand, within AO353_03270 at 698.249 kb on - strand, within AO353_03270 at 698.249 kb on - strand, within AO353_03270 at 698.249 kb on - strand, within AO353_03270 at 698.348 kb on - strand, within AO353_03270 at 698.366 kb on - strand, within AO353_03270 at 698.419 kb on + strand, within AO353_03270 at 698.419 kb on + strand, within AO353_03270 at 698.432 kb on + strand, within AO353_03270 at 698.543 kb on + strand at 698.544 kb on - strand at 698.553 kb on + strand at 698.598 kb on - strand at 698.636 kb on + strand at 698.636 kb on + strand at 698.653 kb on + strand at 698.654 kb on - strand at 698.654 kb on - strand at 698.654 kb on - strand at 698.700 kb on + strand at 698.701 kb on - strand at 698.754 kb on + strand at 698.754 kb on + strand at 698.755 kb on - strand at 698.755 kb on - strand at 698.755 kb on - strand at 698.810 kb on + strand at 698.810 kb on + strand at 698.810 kb on + strand at 698.810 kb on + strand at 698.810 kb on + strand at 698.810 kb on + strand at 698.810 kb on + strand at 698.810 kb on + strand at 698.810 kb on + strand at 698.810 kb on + strand at 698.811 kb on - strand at 698.811 kb on - strand at 698.811 kb on - strand at 698.820 kb on + strand at 698.821 kb on - strand at 698.821 kb on - strand at 698.821 kb on - strand at 698.850 kb on + strand at 698.850 kb on + strand at 698.850 kb on + strand at 698.850 kb on + strand at 698.850 kb on + strand at 698.851 kb on - strand at 698.851 kb on - strand at 698.851 kb on - strand at 698.851 kb on - strand at 698.851 kb on - strand at 698.851 kb on - strand at 698.947 kb on + strand at 698.947 kb on + strand at 698.948 kb on - strand at 698.948 kb on - strand at 698.965 kb on + strand at 698.965 kb on + strand at 698.965 kb on + strand at 698.966 kb on - strand at 698.966 kb on - strand at 698.966 kb on - strand at 698.969 kb on + strand at 698.969 kb on + strand at 698.969 kb on + strand at 698.969 kb on + strand at 698.969 kb on + strand at 698.969 kb on + strand at 698.969 kb on + strand at 698.970 kb on - strand at 698.970 kb on - strand at 698.970 kb on - strand at 698.970 kb on - strand at 698.970 kb on - strand at 698.981 kb on + strand at 698.981 kb on + strand at 698.981 kb on + strand at 698.981 kb on + strand at 698.982 kb on - strand at 698.982 kb on - strand at 698.982 kb on - strand at 698.982 kb on - strand at 699.428 kb on + strand, within AO353_03275 at 699.428 kb on + strand, within AO353_03275 at 699.428 kb on + strand, within AO353_03275 at 699.555 kb on - strand, within AO353_03275 at 699.562 kb on + strand, within AO353_03275 at 699.857 kb on + strand at 699.857 kb on + strand at 699.857 kb on + strand at 699.858 kb on - strand at 699.920 kb on + strand at 699.920 kb on + strand at 699.920 kb on + strand at 699.921 kb on - strand at 699.921 kb on - strand at 699.921 kb on - strand at 699.921 kb on - strand at 699.921 kb on - strand at 699.921 kb on - strand at 699.921 kb on - strand at 699.921 kb on - strand at 699.924 kb on + strand at 699.924 kb on + strand at 699.925 kb on - strand at 699.925 kb on - strand at 699.951 kb on + strand at 699.952 kb on - strand at 699.976 kb on + strand at 699.976 kb on + strand at 699.976 kb on + strand at 699.977 kb on - strand at 699.977 kb on - strand at 699.977 kb on - strand at 699.977 kb on - strand at 700.023 kb on + strand at 700.023 kb on + strand at 700.023 kb on + strand at 700.023 kb on + strand at 700.024 kb on - strand at 700.164 kb on + strand, within AO353_03280 at 700.164 kb on + strand, within AO353_03280 at 700.164 kb on + strand, within AO353_03280 at 700.164 kb on + strand, within AO353_03280 at 700.164 kb on + strand, within AO353_03280 at 700.164 kb on + strand, within AO353_03280 at 700.164 kb on + strand at 700.165 kb on - strand, within AO353_03280 at 700.165 kb on - strand, within AO353_03280 at 700.165 kb on - strand, within AO353_03280 at 700.165 kb on - strand, within AO353_03280 at 700.165 kb on - strand, within AO353_03280 at 700.165 kb on - strand, within AO353_03280 at 700.165 kb on - strand, within AO353_03280 at 700.165 kb on - strand, within AO353_03280 at 700.227 kb on + strand, within AO353_03280 at 700.227 kb on + strand, within AO353_03280 at 700.227 kb on + strand, within AO353_03280 at 700.227 kb on + strand, within AO353_03280 at 700.228 kb on - strand, within AO353_03280 at 700.446 kb on + strand, within AO353_03280 at 700.446 kb on + strand, within AO353_03280 at 700.446 kb on + strand, within AO353_03280 at 700.446 kb on + strand, within AO353_03280 at 700.446 kb on + strand, within AO353_03280 at 700.447 kb on - strand, within AO353_03280 at 700.447 kb on - strand, within AO353_03280 at 700.447 kb on - strand, within AO353_03280 at 700.447 kb on - strand, within AO353_03280 at 700.447 kb on - strand, within AO353_03280 at 700.482 kb on + strand, within AO353_03280 at 700.482 kb on + strand, within AO353_03280 at 700.482 kb on + strand, within AO353_03280 at 700.482 kb on + strand, within AO353_03280 at 700.482 kb on + strand, within AO353_03280 at 700.482 kb on + strand, within AO353_03280 at 700.495 kb on + strand, within AO353_03280 at 700.495 kb on + strand, within AO353_03280 at 700.496 kb on - strand, within AO353_03280 at 700.646 kb on + strand at 700.646 kb on + strand at 700.646 kb on + strand at 700.647 kb on - strand at 700.647 kb on - strand at 700.647 kb on - strand at 700.647 kb on - strand at 700.647 kb on - strand at 700.831 kb on + strand at 700.831 kb on + strand at 700.831 kb on + strand at 700.831 kb on + strand at 700.832 kb on - strand at 700.843 kb on + strand at 700.843 kb on + strand at 700.843 kb on + strand at 700.843 kb on + strand at 700.844 kb on - strand at 700.844 kb on - strand at 700.844 kb on - strand at 700.844 kb on - strand at 700.844 kb on - strand at 700.844 kb on - strand at 700.844 kb on - strand at 700.844 kb on - strand at 700.845 kb on + strand at 700.845 kb on + strand at 700.845 kb on + strand at 700.845 kb on + strand at 700.845 kb on + strand at 700.845 kb on + strand at 700.845 kb on + strand at 700.845 kb on + strand at 700.845 kb on + strand at 700.845 kb on + strand at 700.845 kb on + strand at 700.845 kb on + strand at 700.845 kb on + strand at 700.845 kb on + strand at 700.845 kb on + strand at 700.845 kb on + strand at 700.845 kb on + strand at 700.845 kb on + strand at 700.846 kb on - strand at 700.846 kb on - strand at 700.846 kb on - strand at 700.846 kb on - strand at 700.846 kb on - strand at 700.846 kb on - strand at 700.846 kb on - strand at 700.846 kb on - strand at 700.846 kb on - strand at 700.846 kb on - strand at 700.846 kb on - strand at 700.846 kb on - strand at 700.851 kb on + strand at 700.851 kb on + strand at 700.852 kb on - strand at 700.852 kb on - strand at 700.873 kb on + strand at 700.873 kb on + strand at 700.873 kb on + strand at 700.873 kb on + strand at 700.873 kb on + strand at 700.874 kb on - strand at 700.874 kb on - strand at 700.874 kb on - strand at 700.874 kb on - strand at 700.874 kb on - strand at 700.874 kb on - strand at 700.874 kb on - strand at 700.874 kb on - strand at 700.876 kb on - strand at 700.876 kb on - strand at 700.876 kb on - strand at 700.876 kb on - strand at 700.876 kb on - strand at 700.878 kb on + strand at 700.878 kb on + strand at 700.878 kb on + strand at 700.879 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Nalidixic 0.004 mg/ml remove 698,037 + AO353_03270 0.58 -1.6 698,037 + AO353_03270 0.58 +0.2 698,037 + AO353_03270 0.58 -0.9 698,037 + AO353_03270 0.58 -0.0 698,037 + AO353_03270 0.58 -0.2 698,037 + AO353_03270 0.58 -0.9 698,038 - AO353_03270 0.58 -1.4 698,038 - AO353_03270 0.58 +0.6 698,038 - AO353_03270 0.58 -0.6 698,038 - AO353_03270 0.58 -0.0 698,038 - AO353_03270 0.58 -2.6 698,038 - AO353_03270 0.58 -0.9 698,038 - AO353_03270 0.58 -0.3 698,046 - AO353_03270 0.59 -0.2 698,053 + AO353_03270 0.59 -0.6 698,053 + AO353_03270 0.59 -1.0 698,053 + AO353_03270 0.59 +1.0 698,054 - AO353_03270 0.59 -0.0 698,054 - AO353_03270 0.59 -0.0 698,054 - AO353_03270 0.59 -2.1 698,054 - AO353_03270 0.59 -1.6 698,054 - AO353_03270 0.59 +0.1 698,148 + AO353_03270 0.66 +0.4 698,148 + AO353_03270 0.66 -0.8 698,149 - AO353_03270 0.66 +1.7 698,149 - AO353_03270 0.66 +1.4 698,149 - AO353_03270 0.66 -0.0 698,149 - AO353_03270 0.66 -0.4 698,172 - AO353_03270 0.68 +0.2 698,217 + AO353_03270 0.72 +2.0 698,218 - AO353_03270 0.72 +0.7 698,218 - AO353_03270 0.72 -0.6 698,218 - AO353_03270 0.72 +1.0 698,218 - AO353_03270 0.72 +0.4 698,246 + AO353_03270 0.74 -0.9 698,246 + AO353_03270 0.74 +1.0 698,246 + AO353_03270 0.74 +0.1 698,246 + AO353_03270 0.74 +0.4 698,246 + AO353_03270 0.74 -1.0 698,246 + AO353_03270 0.74 +0.7 698,246 + AO353_03270 0.74 +1.4 698,246 + AO353_03270 0.74 -1.9 698,246 + AO353_03270 0.74 -2.5 698,246 + AO353_03270 0.74 +0.7 698,247 - AO353_03270 0.74 -0.6 698,247 - AO353_03270 0.74 -0.0 698,247 - AO353_03270 0.74 -1.0 698,247 - AO353_03270 0.74 +0.8 698,247 - AO353_03270 0.74 +1.8 698,247 - AO353_03270 0.74 -1.6 698,248 + AO353_03270 0.74 -0.7 698,248 + AO353_03270 0.74 +1.0 698,248 + AO353_03270 0.74 -0.6 698,248 + AO353_03270 0.74 +0.5 698,248 + AO353_03270 0.74 +0.8 698,248 + AO353_03270 0.74 +1.0 698,248 + AO353_03270 0.74 +0.6 698,248 + AO353_03270 0.74 +1.0 698,248 + AO353_03270 0.74 -0.0 698,248 + AO353_03270 0.74 +0.5 698,248 + AO353_03270 0.74 +0.5 698,249 - AO353_03270 0.74 -1.0 698,249 - AO353_03270 0.74 +2.0 698,249 - AO353_03270 0.74 +0.0 698,249 - AO353_03270 0.74 +1.4 698,249 - AO353_03270 0.74 -0.9 698,249 - AO353_03270 0.74 +0.8 698,348 - AO353_03270 0.82 +0.6 698,366 - AO353_03270 0.83 -1.1 698,419 + AO353_03270 0.87 +0.4 698,419 + AO353_03270 0.87 -0.4 698,432 + AO353_03270 0.88 -0.6 698,543 + -0.4 698,544 - +0.8 698,553 + -0.4 698,598 - +1.2 698,636 + +0.4 698,636 + +0.3 698,653 + -0.6 698,654 - +0.4 698,654 - -1.6 698,654 - +1.0 698,700 + -1.9 698,701 - -0.1 698,754 + -1.4 698,754 + -0.0 698,755 - -0.4 698,755 - -1.3 698,755 - +2.2 698,810 + -1.0 698,810 + -0.4 698,810 + -1.9 698,810 + +0.3 698,810 + +1.0 698,810 + -1.4 698,810 + -1.1 698,810 + +1.3 698,810 + -1.0 698,810 + -1.6 698,811 - -0.4 698,811 - +0.8 698,811 - -0.5 698,820 + +0.5 698,821 - -1.9 698,821 - -0.0 698,821 - +0.5 698,850 + +0.3 698,850 + -2.0 698,850 + +0.6 698,850 + +1.8 698,850 + +1.0 698,851 - -0.5 698,851 - -0.4 698,851 - -1.9 698,851 - -0.6 698,851 - -0.0 698,851 - -0.4 698,947 + -0.2 698,947 + -0.0 698,948 - -0.0 698,948 - +2.5 698,965 + +1.0 698,965 + +0.4 698,965 + -0.6 698,966 - +1.0 698,966 - -0.3 698,966 - -0.6 698,969 + -0.4 698,969 + +1.0 698,969 + +1.0 698,969 + -0.0 698,969 + -0.8 698,969 + -0.6 698,969 + +0.7 698,970 - -0.0 698,970 - -0.2 698,970 - -0.0 698,970 - +1.0 698,970 - -1.0 698,981 + +0.4 698,981 + -0.5 698,981 + -0.7 698,981 + +1.0 698,982 - -0.5 698,982 - -1.4 698,982 - -1.3 698,982 - +0.1 699,428 + AO353_03275 0.45 -0.5 699,428 + AO353_03275 0.45 -2.9 699,428 + AO353_03275 0.45 +0.4 699,555 - AO353_03275 0.59 -2.2 699,562 + AO353_03275 0.60 -1.0 699,857 + -1.0 699,857 + -0.0 699,857 + -0.0 699,858 - -0.1 699,920 + +0.2 699,920 + +1.6 699,920 + +2.1 699,921 - -0.0 699,921 - +1.0 699,921 - -0.0 699,921 - -0.4 699,921 - -1.8 699,921 - -0.0 699,921 - -0.0 699,921 - -0.6 699,924 + -0.3 699,924 + -0.5 699,925 - -0.4 699,925 - +0.8 699,951 + +0.2 699,952 - -0.0 699,976 + +2.3 699,976 + +2.0 699,976 + -0.0 699,977 - -0.3 699,977 - +0.5 699,977 - -1.2 699,977 - -0.0 700,023 + -2.4 700,023 + -1.6 700,023 + -0.5 700,023 + -0.9 700,024 - +0.2 700,164 + AO353_03280 0.25 +0.2 700,164 + AO353_03280 0.25 -1.2 700,164 + AO353_03280 0.25 -0.3 700,164 + AO353_03280 0.25 -1.3 700,164 + AO353_03280 0.25 +0.4 700,164 + AO353_03280 0.25 +1.0 700,164 + +0.4 700,165 - AO353_03280 0.25 -0.6 700,165 - AO353_03280 0.25 +1.4 700,165 - AO353_03280 0.25 +0.2 700,165 - AO353_03280 0.25 +0.6 700,165 - AO353_03280 0.25 +0.4 700,165 - AO353_03280 0.25 +0.6 700,165 - AO353_03280 0.25 -1.0 700,165 - AO353_03280 0.25 +0.3 700,227 + AO353_03280 0.35 +2.5 700,227 + AO353_03280 0.35 +1.0 700,227 + AO353_03280 0.35 -0.5 700,227 + AO353_03280 0.35 -1.6 700,228 - AO353_03280 0.35 +1.0 700,446 + AO353_03280 0.71 +0.4 700,446 + AO353_03280 0.71 -0.0 700,446 + AO353_03280 0.71 -0.5 700,446 + AO353_03280 0.71 -1.4 700,446 + AO353_03280 0.71 -0.6 700,447 - AO353_03280 0.71 -1.6 700,447 - AO353_03280 0.71 -1.6 700,447 - AO353_03280 0.71 +0.4 700,447 - AO353_03280 0.71 -0.7 700,447 - AO353_03280 0.71 +0.5 700,482 + AO353_03280 0.77 -0.6 700,482 + AO353_03280 0.77 -1.6 700,482 + AO353_03280 0.77 -1.0 700,482 + AO353_03280 0.77 -0.3 700,482 + AO353_03280 0.77 +2.3 700,482 + AO353_03280 0.77 -1.5 700,495 + AO353_03280 0.79 -2.6 700,495 + AO353_03280 0.79 -0.0 700,496 - AO353_03280 0.79 -1.6 700,646 + -0.6 700,646 + -1.0 700,646 + -1.0 700,647 - +0.5 700,647 - -1.8 700,647 - -1.4 700,647 - -1.0 700,647 - +2.0 700,831 + -0.2 700,831 + +1.0 700,831 + -0.5 700,831 + +0.8 700,832 - -0.4 700,843 + +1.8 700,843 + -0.4 700,843 + +0.2 700,843 + +1.4 700,844 - -1.9 700,844 - -2.0 700,844 - +0.3 700,844 - -0.0 700,844 - +1.0 700,844 - -0.0 700,844 - -0.4 700,844 - +0.0 700,845 + +1.4 700,845 + +2.3 700,845 + +0.3 700,845 + +1.0 700,845 + -0.6 700,845 + -0.0 700,845 + +0.1 700,845 + -0.6 700,845 + -0.3 700,845 + -0.8 700,845 + +1.4 700,845 + +1.4 700,845 + -0.0 700,845 + -0.0 700,845 + +2.0 700,845 + -0.3 700,845 + -2.2 700,845 + +0.2 700,846 - -3.2 700,846 - -1.4 700,846 - -0.1 700,846 - +1.5 700,846 - -0.0 700,846 - -0.7 700,846 - +0.4 700,846 - +1.1 700,846 - -0.0 700,846 - +1.2 700,846 - +1.0 700,846 - -1.0 700,851 + -0.0 700,851 + +0.2 700,852 - +1.2 700,852 - +1.0 700,873 + +0.3 700,873 + +1.0 700,873 + -0.0 700,873 + +1.0 700,873 + -1.2 700,874 - +1.5 700,874 - -0.1 700,874 - -0.0 700,874 - -0.0 700,874 - +0.4 700,874 - +1.5 700,874 - -0.0 700,874 - -1.6 700,876 - +3.0 700,876 - +1.0 700,876 - -1.1 700,876 - -0.0 700,876 - +0.4 700,878 + +1.0 700,878 + -1.5 700,878 + +0.1 700,879 - -0.1
Or see this region's nucleotide sequence