Experiment: Nalidixic 0.004 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AO353_02645 and AO353_02650 are separated by 27 nucleotides AO353_02650 and AO353_02655 are separated by 15 nucleotides AO353_02655 and AO353_02660 are separated by 165 nucleotides
AO353_02645: AO353_02645 - hypothetical protein, at 563,768 to 564,352
_02645
AO353_02650: AO353_02650 - SAM-dependent methyltransferase, at 564,380 to 565,042
_02650
AO353_02655: AO353_02655 - peptidase P60, at 565,058 to 565,591
_02655
AO353_02660: AO353_02660 - peptidase P60, at 565,757 to 566,380
_02660
Position (kb) 564
565
566 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 563.481 kb on + strand at 563.489 kb on + strand at 563.489 kb on + strand at 563.489 kb on + strand at 563.489 kb on + strand at 563.489 kb on + strand at 563.490 kb on - strand at 563.490 kb on - strand at 563.612 kb on + strand at 563.612 kb on + strand at 563.613 kb on - strand at 563.638 kb on + strand at 563.638 kb on + strand at 563.638 kb on + strand at 563.638 kb on + strand at 563.639 kb on - strand at 563.639 kb on - strand at 563.740 kb on + strand at 563.740 kb on + strand at 563.741 kb on - strand at 563.741 kb on - strand at 563.745 kb on + strand at 563.745 kb on + strand at 563.745 kb on + strand at 563.745 kb on + strand at 563.745 kb on + strand at 563.745 kb on + strand at 563.746 kb on - strand at 563.746 kb on - strand at 563.746 kb on - strand at 563.746 kb on - strand at 563.746 kb on - strand at 563.746 kb on - strand at 563.850 kb on - strand, within AO353_02645 at 563.882 kb on + strand, within AO353_02645 at 563.995 kb on + strand, within AO353_02645 at 563.995 kb on + strand, within AO353_02645 at 563.995 kb on + strand, within AO353_02645 at 563.996 kb on - strand, within AO353_02645 at 563.996 kb on - strand, within AO353_02645 at 564.041 kb on + strand, within AO353_02645 at 564.041 kb on + strand, within AO353_02645 at 564.134 kb on + strand, within AO353_02645 at 564.134 kb on + strand, within AO353_02645 at 564.197 kb on - strand, within AO353_02645 at 564.264 kb on - strand, within AO353_02645 at 564.278 kb on + strand, within AO353_02645 at 564.308 kb on + strand at 564.308 kb on + strand at 564.308 kb on + strand at 564.308 kb on + strand at 564.308 kb on + strand at 564.308 kb on + strand at 564.308 kb on + strand at 564.308 kb on + strand at 564.309 kb on - strand at 564.309 kb on - strand at 564.309 kb on - strand at 564.309 kb on - strand at 564.309 kb on - strand at 564.309 kb on - strand at 564.309 kb on - strand at 564.365 kb on + strand at 564.365 kb on + strand at 564.366 kb on - strand at 564.382 kb on - strand at 564.464 kb on - strand, within AO353_02650 at 564.512 kb on + strand, within AO353_02650 at 564.513 kb on - strand, within AO353_02650 at 564.543 kb on - strand, within AO353_02650 at 564.588 kb on + strand, within AO353_02650 at 564.589 kb on - strand, within AO353_02650 at 564.589 kb on - strand, within AO353_02650 at 564.589 kb on - strand, within AO353_02650 at 564.753 kb on + strand, within AO353_02650 at 564.753 kb on + strand, within AO353_02650 at 564.754 kb on - strand, within AO353_02650 at 564.754 kb on - strand, within AO353_02650 at 564.754 kb on - strand at 564.754 kb on - strand, within AO353_02650 at 564.754 kb on - strand, within AO353_02650 at 564.754 kb on - strand, within AO353_02650 at 564.754 kb on - strand, within AO353_02650 at 564.999 kb on + strand at 564.999 kb on + strand at 564.999 kb on + strand at 564.999 kb on + strand at 564.999 kb on + strand at 565.000 kb on - strand at 565.000 kb on - strand at 565.000 kb on - strand at 565.000 kb on - strand at 565.000 kb on - strand at 565.000 kb on - strand at 565.003 kb on + strand at 565.003 kb on + strand at 565.003 kb on + strand at 565.003 kb on + strand at 565.003 kb on + strand at 565.003 kb on + strand at 565.003 kb on + strand at 565.003 kb on + strand at 565.003 kb on + strand at 565.003 kb on + strand at 565.003 kb on + strand at 565.003 kb on + strand at 565.004 kb on - strand at 565.004 kb on - strand at 565.004 kb on - strand at 565.004 kb on - strand at 565.004 kb on - strand at 565.004 kb on - strand at 565.005 kb on + strand at 565.006 kb on - strand at 565.006 kb on - strand at 565.059 kb on + strand at 565.059 kb on + strand at 565.110 kb on + strand at 565.110 kb on + strand at 565.110 kb on + strand at 565.110 kb on + strand at 565.111 kb on - strand at 565.111 kb on - strand at 565.125 kb on + strand, within AO353_02655 at 565.126 kb on - strand, within AO353_02655 at 565.126 kb on - strand, within AO353_02655 at 565.157 kb on - strand, within AO353_02655 at 565.200 kb on + strand, within AO353_02655 at 565.200 kb on + strand, within AO353_02655 at 565.200 kb on + strand, within AO353_02655 at 565.200 kb on + strand, within AO353_02655 at 565.200 kb on + strand, within AO353_02655 at 565.200 kb on + strand, within AO353_02655 at 565.201 kb on - strand, within AO353_02655 at 565.201 kb on - strand, within AO353_02655 at 565.201 kb on - strand, within AO353_02655 at 565.201 kb on - strand, within AO353_02655 at 565.201 kb on - strand, within AO353_02655 at 565.265 kb on + strand, within AO353_02655 at 565.266 kb on - strand, within AO353_02655 at 565.266 kb on - strand, within AO353_02655 at 565.266 kb on - strand, within AO353_02655 at 565.333 kb on + strand, within AO353_02655 at 565.333 kb on + strand, within AO353_02655 at 565.357 kb on - strand, within AO353_02655 at 565.357 kb on - strand, within AO353_02655 at 565.396 kb on + strand, within AO353_02655 at 565.396 kb on + strand, within AO353_02655 at 565.396 kb on + strand, within AO353_02655 at 565.396 kb on + strand, within AO353_02655 at 565.396 kb on + strand, within AO353_02655 at 565.397 kb on - strand, within AO353_02655 at 565.413 kb on + strand, within AO353_02655 at 565.568 kb on + strand at 565.568 kb on + strand at 565.568 kb on + strand at 565.568 kb on + strand at 565.568 kb on + strand at 565.568 kb on + strand at 565.568 kb on + strand at 565.568 kb on + strand at 565.569 kb on - strand at 565.569 kb on - strand at 565.569 kb on - strand at 565.569 kb on - strand at 565.569 kb on - strand at 565.569 kb on - strand at 565.591 kb on + strand at 565.591 kb on + strand at 565.592 kb on - strand at 565.592 kb on - strand at 565.592 kb on - strand at 565.592 kb on - strand at 565.592 kb on - strand at 565.592 kb on - strand at 565.592 kb on - strand at 565.593 kb on + strand at 565.593 kb on + strand at 565.593 kb on + strand at 565.593 kb on + strand at 565.593 kb on + strand at 565.593 kb on + strand at 565.593 kb on + strand at 565.593 kb on + strand at 565.593 kb on + strand at 565.593 kb on + strand at 565.593 kb on + strand at 565.593 kb on + strand at 565.593 kb on + strand at 565.593 kb on + strand at 565.593 kb on + strand at 565.594 kb on - strand at 565.594 kb on - strand at 565.594 kb on - strand at 565.594 kb on - strand at 565.594 kb on - strand at 565.594 kb on - strand at 565.594 kb on - strand at 565.594 kb on - strand at 565.594 kb on - strand at 565.594 kb on - strand at 565.594 kb on - strand at 565.594 kb on - strand at 565.594 kb on - strand at 565.665 kb on - strand at 565.672 kb on + strand at 565.676 kb on + strand at 565.677 kb on - strand at 565.686 kb on + strand at 565.686 kb on + strand at 565.686 kb on + strand at 565.686 kb on + strand at 565.724 kb on + strand at 565.732 kb on + strand at 565.738 kb on + strand at 565.738 kb on - strand at 565.831 kb on - strand, within AO353_02660 at 565.831 kb on - strand, within AO353_02660 at 565.847 kb on - strand, within AO353_02660 at 565.908 kb on + strand, within AO353_02660 at 565.908 kb on + strand, within AO353_02660 at 565.909 kb on - strand, within AO353_02660
Per-strain Table
Position Strand Gene LocusTag Fraction Nalidixic 0.004 mg/ml remove 563,481 + -1.4 563,489 + +0.2 563,489 + -0.4 563,489 + +0.9 563,489 + -0.9 563,489 + -1.1 563,490 - +2.9 563,490 - +1.2 563,612 + -1.4 563,612 + +0.0 563,613 - -0.9 563,638 + -0.1 563,638 + -0.5 563,638 + -1.9 563,638 + -1.1 563,639 - -0.9 563,639 - -0.3 563,740 + +1.4 563,740 + +0.2 563,741 - +1.1 563,741 - +0.6 563,745 + -0.7 563,745 + +0.2 563,745 + +0.2 563,745 + +1.5 563,745 + +0.7 563,745 + -0.0 563,746 - +0.2 563,746 - +0.1 563,746 - -1.4 563,746 - +0.1 563,746 - +0.3 563,746 - +0.7 563,850 - AO353_02645 0.14 +0.4 563,882 + AO353_02645 0.19 +0.4 563,995 + AO353_02645 0.39 -0.8 563,995 + AO353_02645 0.39 -1.7 563,995 + AO353_02645 0.39 +1.3 563,996 - AO353_02645 0.39 +0.9 563,996 - AO353_02645 0.39 -1.1 564,041 + AO353_02645 0.47 +0.1 564,041 + AO353_02645 0.47 -1.5 564,134 + AO353_02645 0.63 -0.1 564,134 + AO353_02645 0.63 -1.1 564,197 - AO353_02645 0.73 +0.6 564,264 - AO353_02645 0.85 -0.7 564,278 + AO353_02645 0.87 +2.5 564,308 + +1.9 564,308 + -0.1 564,308 + +0.9 564,308 + +0.0 564,308 + -1.1 564,308 + -0.1 564,308 + +0.9 564,308 + -0.9 564,309 - -1.1 564,309 - +0.4 564,309 - +1.1 564,309 - -2.5 564,309 - +0.6 564,309 - -0.1 564,309 - -0.2 564,365 + -1.7 564,365 + -0.9 564,366 - +0.0 564,382 - +1.4 564,464 - AO353_02650 0.13 +1.5 564,512 + AO353_02650 0.20 +0.9 564,513 - AO353_02650 0.20 +0.9 564,543 - AO353_02650 0.25 -0.1 564,588 + AO353_02650 0.31 -1.2 564,589 - AO353_02650 0.32 +0.4 564,589 - AO353_02650 0.32 +0.1 564,589 - AO353_02650 0.32 +0.6 564,753 + AO353_02650 0.56 +0.9 564,753 + AO353_02650 0.56 +0.1 564,754 - AO353_02650 0.56 +0.2 564,754 - AO353_02650 0.56 -1.8 564,754 - +1.5 564,754 - AO353_02650 0.56 +0.6 564,754 - AO353_02650 0.56 +1.0 564,754 - AO353_02650 0.56 +1.1 564,754 - AO353_02650 0.56 +2.1 564,999 + +0.5 564,999 + +0.2 564,999 + +1.2 564,999 + +1.5 564,999 + -0.3 565,000 - -0.7 565,000 - +0.1 565,000 - +1.2 565,000 - +0.4 565,000 - +0.8 565,000 - -2.2 565,003 + -0.2 565,003 + +0.6 565,003 + +0.9 565,003 + -1.2 565,003 + +0.6 565,003 + +1.7 565,003 + -0.4 565,003 + -0.1 565,003 + -0.3 565,003 + +0.1 565,003 + +0.0 565,003 + +1.3 565,004 - +0.9 565,004 - -1.5 565,004 - -1.7 565,004 - -0.1 565,004 - -1.1 565,004 - +1.5 565,005 + +1.5 565,006 - -2.4 565,006 - -0.9 565,059 + +0.9 565,059 + +0.5 565,110 + -0.1 565,110 + +0.2 565,110 + -0.1 565,110 + -0.1 565,111 - -1.2 565,111 - -0.9 565,125 + AO353_02655 0.13 -0.1 565,126 - AO353_02655 0.13 +0.9 565,126 - AO353_02655 0.13 +0.9 565,157 - AO353_02655 0.19 +1.3 565,200 + AO353_02655 0.27 +0.7 565,200 + AO353_02655 0.27 +0.2 565,200 + AO353_02655 0.27 -1.4 565,200 + AO353_02655 0.27 -0.1 565,200 + AO353_02655 0.27 +2.1 565,200 + AO353_02655 0.27 +0.1 565,201 - AO353_02655 0.27 +0.7 565,201 - AO353_02655 0.27 -0.2 565,201 - AO353_02655 0.27 +0.2 565,201 - AO353_02655 0.27 +1.2 565,201 - AO353_02655 0.27 +0.2 565,265 + AO353_02655 0.39 +1.7 565,266 - AO353_02655 0.39 +0.9 565,266 - AO353_02655 0.39 +0.3 565,266 - AO353_02655 0.39 +0.7 565,333 + AO353_02655 0.51 +0.3 565,333 + AO353_02655 0.51 -1.7 565,357 - AO353_02655 0.56 +0.3 565,357 - AO353_02655 0.56 +1.1 565,396 + AO353_02655 0.63 -0.5 565,396 + AO353_02655 0.63 +1.2 565,396 + AO353_02655 0.63 +0.1 565,396 + AO353_02655 0.63 -0.9 565,396 + AO353_02655 0.63 +0.5 565,397 - AO353_02655 0.63 -1.7 565,413 + AO353_02655 0.66 -0.1 565,568 + -0.7 565,568 + +0.9 565,568 + -1.1 565,568 + -0.7 565,568 + +0.6 565,568 + +0.1 565,568 + -0.1 565,568 + +1.5 565,569 - +1.4 565,569 - +0.5 565,569 - +0.3 565,569 - +0.9 565,569 - -0.3 565,569 - -0.2 565,591 + -2.1 565,591 + +1.7 565,592 - +0.2 565,592 - -0.7 565,592 - +0.2 565,592 - +0.7 565,592 - +0.5 565,592 - +0.8 565,592 - -0.2 565,593 + +0.9 565,593 + +0.9 565,593 + +0.6 565,593 + +0.9 565,593 + +1.2 565,593 + +0.2 565,593 + +0.6 565,593 + +0.9 565,593 + +0.6 565,593 + +0.7 565,593 + -0.2 565,593 + +0.5 565,593 + -1.9 565,593 + +1.5 565,593 + +0.1 565,594 - -0.7 565,594 - +0.9 565,594 - -1.1 565,594 - +0.9 565,594 - +1.5 565,594 - +0.9 565,594 - -0.5 565,594 - +1.2 565,594 - +1.5 565,594 - +0.4 565,594 - -0.4 565,594 - -0.5 565,594 - +0.2 565,665 - +0.9 565,672 + +0.0 565,676 + -0.1 565,677 - +0.3 565,686 + -1.7 565,686 + +3.2 565,686 + -1.7 565,686 + +0.1 565,724 + -2.2 565,732 + +0.8 565,738 + -0.7 565,738 - +0.1 565,831 - AO353_02660 0.12 +0.8 565,831 - AO353_02660 0.12 -0.3 565,847 - AO353_02660 0.14 +0.3 565,908 + AO353_02660 0.24 +1.2 565,908 + AO353_02660 0.24 +0.5 565,909 - AO353_02660 0.24 +0.6
Or see this region's nucleotide sequence