Experiment: Nalidixic 0.004 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AO353_02295 and AO353_02300 are separated by 82 nucleotides AO353_02300 and AO353_02305 are separated by 343 nucleotides AO353_02305 and AO353_02310 are separated by 65 nucleotides AO353_02310 and AO353_02315 are separated by 223 nucleotides
AO353_02295: AO353_02295 - GntR family transcriptional regulator, at 488,362 to 489,528
_02295
AO353_02300: AO353_02300 - MarR family transcriptional regulator, at 489,611 to 490,054
_02300
AO353_02305: AO353_02305 - guanine permease, at 490,398 to 491,747
_02305
AO353_02310: AO353_02310 - lysine transporter LysE, at 491,813 to 492,439
_02310
AO353_02315: AO353_02315 - 5-hydroxyisourate hydrolase, at 492,663 to 493,016
_02315
Position (kb) 490
491
492 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 489.499 kb on - strand at 489.499 kb on - strand at 489.560 kb on + strand at 489.571 kb on - strand at 489.585 kb on - strand at 489.602 kb on + strand at 489.603 kb on - strand at 489.622 kb on + strand at 489.889 kb on + strand, within AO353_02300 at 489.889 kb on + strand, within AO353_02300 at 489.889 kb on + strand, within AO353_02300 at 490.000 kb on - strand, within AO353_02300 at 490.000 kb on - strand, within AO353_02300 at 490.000 kb on - strand, within AO353_02300 at 490.000 kb on - strand, within AO353_02300 at 490.011 kb on + strand at 490.118 kb on - strand at 490.118 kb on - strand at 490.141 kb on - strand at 490.141 kb on - strand at 490.203 kb on + strand at 490.203 kb on + strand at 490.203 kb on + strand at 490.203 kb on + strand at 490.203 kb on + strand at 490.204 kb on - strand at 490.204 kb on - strand at 490.204 kb on - strand at 490.204 kb on - strand at 490.204 kb on - strand at 490.205 kb on + strand at 490.205 kb on + strand at 490.205 kb on + strand at 490.205 kb on + strand at 490.205 kb on + strand at 490.205 kb on + strand at 490.205 kb on + strand at 490.205 kb on + strand at 490.205 kb on + strand at 490.205 kb on + strand at 490.205 kb on + strand at 490.205 kb on + strand at 490.205 kb on + strand at 490.206 kb on - strand at 490.206 kb on - strand at 490.206 kb on - strand at 490.206 kb on - strand at 490.206 kb on - strand at 490.206 kb on - strand at 490.206 kb on - strand at 490.206 kb on - strand at 490.206 kb on - strand at 490.206 kb on - strand at 490.206 kb on - strand at 490.206 kb on - strand at 490.206 kb on - strand at 490.206 kb on - strand at 490.263 kb on - strand at 490.274 kb on + strand at 490.274 kb on + strand at 490.323 kb on + strand at 490.324 kb on - strand at 490.324 kb on - strand at 490.324 kb on - strand at 490.324 kb on - strand at 490.324 kb on - strand at 490.324 kb on - strand at 490.368 kb on + strand at 490.368 kb on + strand at 490.368 kb on + strand at 490.368 kb on + strand at 490.369 kb on - strand at 490.369 kb on - strand at 490.369 kb on - strand at 490.369 kb on - strand at 490.369 kb on - strand at 490.374 kb on + strand at 490.374 kb on + strand at 490.375 kb on - strand at 490.375 kb on - strand at 490.375 kb on - strand at 490.390 kb on + strand at 490.390 kb on + strand at 490.391 kb on - strand at 490.391 kb on - strand at 490.391 kb on - strand at 490.391 kb on - strand at 490.391 kb on - strand at 490.391 kb on - strand at 490.475 kb on + strand at 490.523 kb on + strand at 490.523 kb on + strand at 490.523 kb on + strand at 490.523 kb on + strand at 490.524 kb on - strand at 490.524 kb on - strand at 490.524 kb on - strand at 490.524 kb on - strand at 490.524 kb on - strand at 490.524 kb on - strand at 490.526 kb on + strand at 490.526 kb on + strand at 490.526 kb on + strand at 490.526 kb on + strand at 490.526 kb on + strand at 490.526 kb on + strand at 490.527 kb on - strand at 490.527 kb on - strand at 490.527 kb on - strand at 490.548 kb on + strand, within AO353_02305 at 490.548 kb on + strand at 490.548 kb on + strand, within AO353_02305 at 490.548 kb on + strand, within AO353_02305 at 490.548 kb on + strand, within AO353_02305 at 490.548 kb on + strand, within AO353_02305 at 490.548 kb on + strand, within AO353_02305 at 490.549 kb on - strand, within AO353_02305 at 490.549 kb on - strand, within AO353_02305 at 490.549 kb on - strand, within AO353_02305 at 490.549 kb on - strand, within AO353_02305 at 490.549 kb on - strand, within AO353_02305 at 490.549 kb on - strand, within AO353_02305 at 490.549 kb on - strand, within AO353_02305 at 490.549 kb on - strand, within AO353_02305 at 490.549 kb on - strand, within AO353_02305 at 490.659 kb on + strand, within AO353_02305 at 490.660 kb on - strand, within AO353_02305 at 490.660 kb on - strand, within AO353_02305 at 490.660 kb on - strand, within AO353_02305 at 490.712 kb on + strand, within AO353_02305 at 490.712 kb on + strand, within AO353_02305 at 490.713 kb on - strand, within AO353_02305 at 490.716 kb on + strand, within AO353_02305 at 490.716 kb on + strand, within AO353_02305 at 490.717 kb on - strand, within AO353_02305 at 490.717 kb on - strand, within AO353_02305 at 490.717 kb on - strand, within AO353_02305 at 490.717 kb on - strand, within AO353_02305 at 490.717 kb on - strand, within AO353_02305 at 490.835 kb on + strand, within AO353_02305 at 490.835 kb on + strand, within AO353_02305 at 490.835 kb on + strand, within AO353_02305 at 490.835 kb on + strand, within AO353_02305 at 490.835 kb on + strand, within AO353_02305 at 490.835 kb on + strand, within AO353_02305 at 490.835 kb on + strand, within AO353_02305 at 491.016 kb on + strand, within AO353_02305 at 491.016 kb on + strand, within AO353_02305 at 491.016 kb on + strand, within AO353_02305 at 491.016 kb on + strand, within AO353_02305 at 491.017 kb on - strand, within AO353_02305 at 491.094 kb on + strand, within AO353_02305 at 491.094 kb on + strand, within AO353_02305 at 491.094 kb on + strand, within AO353_02305 at 491.364 kb on + strand, within AO353_02305 at 491.364 kb on + strand, within AO353_02305 at 491.364 kb on + strand, within AO353_02305 at 491.364 kb on + strand, within AO353_02305 at 491.364 kb on + strand, within AO353_02305 at 491.364 kb on + strand, within AO353_02305 at 491.364 kb on + strand, within AO353_02305 at 491.364 kb on + strand, within AO353_02305 at 491.364 kb on + strand, within AO353_02305 at 491.365 kb on - strand, within AO353_02305 at 491.365 kb on - strand, within AO353_02305 at 491.365 kb on - strand, within AO353_02305 at 491.386 kb on + strand, within AO353_02305 at 491.425 kb on + strand, within AO353_02305 at 491.425 kb on + strand, within AO353_02305 at 491.425 kb on + strand, within AO353_02305 at 491.425 kb on + strand, within AO353_02305 at 491.425 kb on + strand, within AO353_02305 at 491.425 kb on + strand, within AO353_02305 at 491.426 kb on - strand, within AO353_02305 at 491.426 kb on - strand, within AO353_02305 at 491.426 kb on - strand, within AO353_02305 at 491.426 kb on - strand, within AO353_02305 at 491.426 kb on - strand, within AO353_02305 at 491.426 kb on - strand, within AO353_02305 at 491.434 kb on + strand, within AO353_02305 at 491.434 kb on + strand, within AO353_02305 at 491.434 kb on + strand, within AO353_02305 at 491.435 kb on - strand, within AO353_02305 at 491.435 kb on - strand, within AO353_02305 at 491.435 kb on - strand, within AO353_02305 at 491.435 kb on - strand, within AO353_02305 at 491.435 kb on - strand, within AO353_02305 at 491.435 kb on - strand, within AO353_02305 at 491.435 kb on - strand, within AO353_02305 at 491.435 kb on - strand, within AO353_02305 at 491.438 kb on + strand, within AO353_02305 at 491.439 kb on - strand, within AO353_02305 at 491.439 kb on - strand, within AO353_02305 at 491.508 kb on + strand, within AO353_02305 at 491.508 kb on + strand, within AO353_02305 at 491.508 kb on + strand, within AO353_02305 at 491.508 kb on + strand, within AO353_02305 at 491.508 kb on + strand, within AO353_02305 at 491.509 kb on - strand, within AO353_02305 at 491.642 kb on + strand at 491.642 kb on + strand at 491.649 kb on + strand at 491.649 kb on + strand at 491.649 kb on + strand at 491.649 kb on + strand at 491.649 kb on + strand at 491.650 kb on - strand at 491.650 kb on - strand at 491.650 kb on - strand at 491.650 kb on - strand at 491.650 kb on - strand at 491.650 kb on - strand at 491.675 kb on + strand at 491.745 kb on + strand at 491.746 kb on - strand at 491.746 kb on - strand at 491.746 kb on - strand at 491.799 kb on + strand at 491.799 kb on + strand at 491.799 kb on + strand at 491.799 kb on + strand at 491.799 kb on + strand at 491.799 kb on + strand at 491.799 kb on + strand at 491.799 kb on + strand at 491.800 kb on - strand at 491.800 kb on - strand at 491.800 kb on - strand at 491.912 kb on + strand, within AO353_02310 at 491.912 kb on + strand, within AO353_02310 at 491.913 kb on - strand, within AO353_02310 at 491.913 kb on - strand, within AO353_02310 at 491.913 kb on - strand, within AO353_02310 at 491.913 kb on - strand, within AO353_02310 at 491.913 kb on - strand, within AO353_02310 at 491.931 kb on - strand, within AO353_02310 at 491.931 kb on - strand, within AO353_02310 at 491.952 kb on + strand, within AO353_02310 at 491.953 kb on - strand, within AO353_02310 at 491.953 kb on - strand, within AO353_02310 at 492.056 kb on + strand, within AO353_02310 at 492.057 kb on - strand, within AO353_02310 at 492.057 kb on - strand, within AO353_02310 at 492.065 kb on + strand, within AO353_02310 at 492.066 kb on - strand, within AO353_02310 at 492.465 kb on + strand at 492.465 kb on + strand at 492.466 kb on - strand at 492.466 kb on - strand at 492.466 kb on - strand at 492.466 kb on - strand at 492.503 kb on + strand at 492.503 kb on + strand at 492.503 kb on + strand at 492.503 kb on + strand at 492.503 kb on + strand at 492.503 kb on + strand at 492.504 kb on - strand at 492.504 kb on - strand at 492.504 kb on - strand at 492.529 kb on + strand at 492.529 kb on + strand at 492.529 kb on + strand at 492.529 kb on + strand at 492.529 kb on + strand at 492.530 kb on - strand at 492.530 kb on - strand at 492.530 kb on - strand at 492.621 kb on + strand at 492.621 kb on + strand at 492.621 kb on + strand at 492.621 kb on + strand at 492.621 kb on + strand at 492.621 kb on + strand at 492.621 kb on + strand at 492.621 kb on + strand at 492.621 kb on + strand at 492.621 kb on + strand at 492.621 kb on + strand at 492.621 kb on + strand at 492.621 kb on + strand at 492.622 kb on - strand at 492.622 kb on - strand at 492.622 kb on - strand at 492.622 kb on - strand at 492.622 kb on - strand at 492.622 kb on - strand at 492.622 kb on - strand at 492.622 kb on - strand at 492.622 kb on - strand at 492.623 kb on + strand at 492.623 kb on + strand at 492.623 kb on + strand at 492.624 kb on - strand at 492.647 kb on + strand at 492.647 kb on + strand at 492.647 kb on + strand at 492.647 kb on + strand at 492.647 kb on + strand at 492.648 kb on - strand at 492.648 kb on - strand at 492.648 kb on - strand at 492.648 kb on - strand at 492.648 kb on - strand at 492.648 kb on - strand at 492.648 kb on - strand at 492.664 kb on + strand at 492.665 kb on - strand at 492.665 kb on - strand at 492.676 kb on + strand at 492.686 kb on - strand at 492.686 kb on - strand at 492.686 kb on - strand at 492.686 kb on - strand at 492.692 kb on - strand at 492.692 kb on - strand at 492.719 kb on - strand, within AO353_02315
Per-strain Table
Position Strand Gene LocusTag Fraction Nalidixic 0.004 mg/ml remove 489,499 - -0.4 489,499 - +0.2 489,560 + -0.1 489,571 - +0.4 489,585 - -1.1 489,602 + +0.4 489,603 - +0.9 489,622 + -0.4 489,889 + AO353_02300 0.63 -1.7 489,889 + AO353_02300 0.63 -0.1 489,889 + AO353_02300 0.63 +0.2 490,000 - AO353_02300 0.88 -0.3 490,000 - AO353_02300 0.88 -1.9 490,000 - AO353_02300 0.88 -2.9 490,000 - AO353_02300 0.88 +0.9 490,011 + +0.8 490,118 - +0.7 490,118 - -0.1 490,141 - +0.5 490,141 - -1.7 490,203 + -1.1 490,203 + -0.5 490,203 + -0.1 490,203 + -0.1 490,203 + -0.6 490,204 - +1.9 490,204 - +0.9 490,204 - -0.6 490,204 - +3.5 490,204 - -0.7 490,205 + +0.3 490,205 + -0.7 490,205 + -0.3 490,205 + +0.3 490,205 + -0.5 490,205 + -0.1 490,205 + -0.5 490,205 + -0.6 490,205 + -2.1 490,205 + -0.3 490,205 + -1.3 490,205 + +1.4 490,205 + -0.1 490,206 - -1.6 490,206 - -0.2 490,206 - -0.5 490,206 - +1.9 490,206 - -0.1 490,206 - +0.6 490,206 - -1.4 490,206 - -1.9 490,206 - +0.0 490,206 - +0.3 490,206 - +0.9 490,206 - -1.4 490,206 - -0.6 490,206 - +1.2 490,263 - -1.2 490,274 + +1.3 490,274 + -0.4 490,323 + +1.5 490,324 - +0.3 490,324 - -1.0 490,324 - -0.9 490,324 - -1.9 490,324 - +0.3 490,324 - +0.2 490,368 + +0.3 490,368 + -0.1 490,368 + -1.4 490,368 + -0.9 490,369 - -0.9 490,369 - -0.1 490,369 - -0.8 490,369 - -1.1 490,369 - +1.2 490,374 + -2.0 490,374 + -1.9 490,375 - +0.7 490,375 - -0.5 490,375 - -0.1 490,390 + -0.1 490,390 + +1.0 490,391 - +0.5 490,391 - +0.3 490,391 - -1.4 490,391 - -0.7 490,391 - -0.7 490,391 - -0.4 490,475 + -1.3 490,523 + +0.9 490,523 + +1.7 490,523 + -1.4 490,523 + +2.5 490,524 - -0.7 490,524 - +0.2 490,524 - -0.3 490,524 - -1.7 490,524 - -0.1 490,524 - +0.9 490,526 + +0.2 490,526 + +0.5 490,526 + -0.4 490,526 + -0.7 490,526 + -0.2 490,526 + -0.1 490,527 - -0.8 490,527 - +0.9 490,527 - -1.2 490,548 + AO353_02305 0.11 +0.5 490,548 + +0.3 490,548 + AO353_02305 0.11 +0.2 490,548 + AO353_02305 0.11 -1.9 490,548 + AO353_02305 0.11 -0.7 490,548 + AO353_02305 0.11 +0.7 490,548 + AO353_02305 0.11 -1.7 490,549 - AO353_02305 0.11 +1.9 490,549 - AO353_02305 0.11 +0.2 490,549 - AO353_02305 0.11 -0.7 490,549 - AO353_02305 0.11 -0.1 490,549 - AO353_02305 0.11 -1.0 490,549 - AO353_02305 0.11 +0.9 490,549 - AO353_02305 0.11 +0.3 490,549 - AO353_02305 0.11 +0.3 490,549 - AO353_02305 0.11 +1.9 490,659 + AO353_02305 0.19 +0.9 490,660 - AO353_02305 0.19 +0.4 490,660 - AO353_02305 0.19 -0.2 490,660 - AO353_02305 0.19 -0.5 490,712 + AO353_02305 0.23 +1.5 490,712 + AO353_02305 0.23 +0.1 490,713 - AO353_02305 0.23 -0.9 490,716 + AO353_02305 0.24 -1.8 490,716 + AO353_02305 0.24 +0.5 490,717 - AO353_02305 0.24 -2.1 490,717 - AO353_02305 0.24 -0.1 490,717 - AO353_02305 0.24 -0.4 490,717 - AO353_02305 0.24 -0.8 490,717 - AO353_02305 0.24 -2.1 490,835 + AO353_02305 0.32 +0.2 490,835 + AO353_02305 0.32 +0.3 490,835 + AO353_02305 0.32 +1.1 490,835 + AO353_02305 0.32 +0.3 490,835 + AO353_02305 0.32 +1.5 490,835 + AO353_02305 0.32 +0.6 490,835 + AO353_02305 0.32 +0.1 491,016 + AO353_02305 0.46 +0.9 491,016 + AO353_02305 0.46 +0.7 491,016 + AO353_02305 0.46 +0.9 491,016 + AO353_02305 0.46 +0.9 491,017 - AO353_02305 0.46 -0.7 491,094 + AO353_02305 0.52 -1.4 491,094 + AO353_02305 0.52 +0.3 491,094 + AO353_02305 0.52 +3.7 491,364 + AO353_02305 0.72 +0.4 491,364 + AO353_02305 0.72 +0.9 491,364 + AO353_02305 0.72 +1.4 491,364 + AO353_02305 0.72 -0.1 491,364 + AO353_02305 0.72 -1.4 491,364 + AO353_02305 0.72 -0.0 491,364 + AO353_02305 0.72 -0.5 491,364 + AO353_02305 0.72 +1.7 491,364 + AO353_02305 0.72 +0.5 491,365 - AO353_02305 0.72 +0.6 491,365 - AO353_02305 0.72 -2.4 491,365 - AO353_02305 0.72 -1.4 491,386 + AO353_02305 0.73 -0.2 491,425 + AO353_02305 0.76 -0.6 491,425 + AO353_02305 0.76 +1.1 491,425 + AO353_02305 0.76 +0.5 491,425 + AO353_02305 0.76 -2.3 491,425 + AO353_02305 0.76 +0.5 491,425 + AO353_02305 0.76 +0.2 491,426 - AO353_02305 0.76 +0.4 491,426 - AO353_02305 0.76 +1.9 491,426 - AO353_02305 0.76 -0.1 491,426 - AO353_02305 0.76 +0.3 491,426 - AO353_02305 0.76 +1.7 491,426 - AO353_02305 0.76 -0.1 491,434 + AO353_02305 0.77 -0.3 491,434 + AO353_02305 0.77 +0.6 491,434 + AO353_02305 0.77 -1.1 491,435 - AO353_02305 0.77 +0.0 491,435 - AO353_02305 0.77 +0.5 491,435 - AO353_02305 0.77 -1.3 491,435 - AO353_02305 0.77 +0.7 491,435 - AO353_02305 0.77 -0.7 491,435 - AO353_02305 0.77 -0.2 491,435 - AO353_02305 0.77 -0.5 491,435 - AO353_02305 0.77 -0.1 491,438 + AO353_02305 0.77 +0.8 491,439 - AO353_02305 0.77 -0.5 491,439 - AO353_02305 0.77 -0.2 491,508 + AO353_02305 0.82 +0.4 491,508 + AO353_02305 0.82 +0.9 491,508 + AO353_02305 0.82 +0.1 491,508 + AO353_02305 0.82 +1.5 491,508 + AO353_02305 0.82 +0.6 491,509 - AO353_02305 0.82 -0.9 491,642 + +0.9 491,642 + +0.9 491,649 + +0.9 491,649 + -0.9 491,649 + +1.1 491,649 + +0.2 491,649 + +0.6 491,650 - -2.1 491,650 - -0.6 491,650 - -1.6 491,650 - +0.5 491,650 - -0.4 491,650 - +0.6 491,675 + -2.6 491,745 + +0.4 491,746 - -2.1 491,746 - +1.5 491,746 - -0.5 491,799 + +0.9 491,799 + +0.4 491,799 + -0.1 491,799 + -0.7 491,799 + +0.3 491,799 + +0.1 491,799 + +1.6 491,799 + +0.7 491,800 - -1.0 491,800 - +1.0 491,800 - -1.0 491,912 + AO353_02310 0.16 -1.4 491,912 + AO353_02310 0.16 +0.6 491,913 - AO353_02310 0.16 -0.8 491,913 - AO353_02310 0.16 +1.9 491,913 - AO353_02310 0.16 -0.7 491,913 - AO353_02310 0.16 -1.1 491,913 - AO353_02310 0.16 +0.9 491,931 - AO353_02310 0.19 +1.4 491,931 - AO353_02310 0.19 -1.4 491,952 + AO353_02310 0.22 -1.1 491,953 - AO353_02310 0.22 -0.5 491,953 - AO353_02310 0.22 -0.4 492,056 + AO353_02310 0.39 -0.4 492,057 - AO353_02310 0.39 -1.1 492,057 - AO353_02310 0.39 +0.7 492,065 + AO353_02310 0.40 +0.1 492,066 - AO353_02310 0.40 -0.7 492,465 + -1.4 492,465 + +0.5 492,466 - +1.5 492,466 - +0.5 492,466 - +1.3 492,466 - -0.3 492,503 + +0.9 492,503 + +0.6 492,503 + +0.4 492,503 + -0.8 492,503 + +0.3 492,503 + -1.7 492,504 - -0.7 492,504 - -0.2 492,504 - +1.5 492,529 + -0.0 492,529 + +0.2 492,529 + -1.6 492,529 + -2.0 492,529 + +1.7 492,530 - -1.1 492,530 - +0.2 492,530 - -0.2 492,621 + +0.3 492,621 + +0.9 492,621 + -0.3 492,621 + +0.9 492,621 + -0.7 492,621 + -1.1 492,621 + +0.4 492,621 + +0.3 492,621 + -1.1 492,621 + -0.5 492,621 + -0.6 492,621 + +1.0 492,621 + +0.4 492,622 - +1.5 492,622 - -1.4 492,622 - -1.4 492,622 - +0.9 492,622 - -0.4 492,622 - -0.1 492,622 - -0.8 492,622 - -0.8 492,622 - -0.7 492,623 + +0.6 492,623 + -0.5 492,623 + +1.1 492,624 - -2.4 492,647 + +0.2 492,647 + +1.5 492,647 + +0.9 492,647 + -0.7 492,647 + -1.5 492,648 - -1.1 492,648 - -1.6 492,648 - -0.3 492,648 - -0.1 492,648 - +0.1 492,648 - -1.9 492,648 - -0.7 492,664 + -1.8 492,665 - -0.9 492,665 - +0.3 492,676 + -1.1 492,686 - -0.7 492,686 - +1.4 492,686 - +0.9 492,686 - -0.4 492,692 - -0.1 492,692 - -0.7 492,719 - AO353_02315 0.16 +0.5
Or see this region's nucleotide sequence