Experiment: Nalidixic 0.004 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AO353_01790 and AO353_01795 are separated by 160 nucleotides AO353_01795 and AO353_01800 are separated by 66 nucleotides AO353_01800 and AO353_01805 overlap by 1 nucleotides AO353_01805 and AO353_01810 are separated by 254 nucleotides
AO353_01790: AO353_01790 - thioesterase, at 376,275 to 376,751
_01790
AO353_01795: AO353_01795 - hypothetical protein, at 376,912 to 377,151
_01795
AO353_01800: AO353_01800 - hypothetical protein, at 377,218 to 377,619
_01800
AO353_01805: AO353_01805 - hypothetical protein, at 377,619 to 378,356
_01805
AO353_01810: AO353_01810 - branched-chain amino acid ABC transporter substrate-binding protein, at 378,611 to 379,924
_01810
Position (kb) 377
378
379 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4 at 376.631 kb on - strand, within AO353_01790 at 376.658 kb on + strand, within AO353_01790 at 376.658 kb on + strand, within AO353_01790 at 376.658 kb on + strand, within AO353_01790 at 376.658 kb on + strand, within AO353_01790 at 376.659 kb on - strand, within AO353_01790 at 376.659 kb on - strand, within AO353_01790 at 376.659 kb on - strand, within AO353_01790 at 376.659 kb on - strand, within AO353_01790 at 376.659 kb on - strand, within AO353_01790 at 376.677 kb on + strand, within AO353_01790 at 376.678 kb on - strand, within AO353_01790 at 376.769 kb on + strand at 376.770 kb on - strand at 376.770 kb on - strand at 376.791 kb on - strand at 376.816 kb on - strand at 376.819 kb on + strand at 376.820 kb on - strand at 376.826 kb on + strand at 376.826 kb on + strand at 376.828 kb on + strand at 376.828 kb on + strand at 376.828 kb on + strand at 376.828 kb on + strand at 376.828 kb on + strand at 376.828 kb on + strand at 376.829 kb on - strand at 376.829 kb on - strand at 376.829 kb on - strand at 376.829 kb on - strand at 376.829 kb on - strand at 376.829 kb on - strand at 376.829 kb on - strand at 376.830 kb on + strand at 376.830 kb on + strand at 376.830 kb on + strand at 376.831 kb on - strand at 376.831 kb on - strand at 376.831 kb on - strand at 376.836 kb on + strand at 376.852 kb on + strand at 376.852 kb on + strand at 376.853 kb on - strand at 376.883 kb on + strand at 376.883 kb on + strand at 376.883 kb on + strand at 376.884 kb on - strand at 376.884 kb on - strand at 376.884 kb on - strand at 376.884 kb on - strand at 376.884 kb on - strand at 376.884 kb on - strand at 376.884 kb on - strand at 376.887 kb on + strand at 376.887 kb on + strand at 376.917 kb on + strand at 376.918 kb on - strand at 376.925 kb on + strand at 376.925 kb on + strand at 376.925 kb on + strand at 376.925 kb on + strand at 376.925 kb on + strand at 376.925 kb on + strand at 376.925 kb on + strand at 376.925 kb on + strand at 376.926 kb on - strand at 376.926 kb on - strand at 376.926 kb on - strand at 376.926 kb on - strand at 376.929 kb on + strand at 376.930 kb on - strand at 377.052 kb on + strand, within AO353_01795 at 377.052 kb on + strand, within AO353_01795 at 377.102 kb on + strand, within AO353_01795 at 377.103 kb on - strand, within AO353_01795 at 377.121 kb on + strand, within AO353_01795 at 377.121 kb on + strand, within AO353_01795 at 377.121 kb on + strand, within AO353_01795 at 377.140 kb on - strand at 377.149 kb on + strand at 377.149 kb on + strand at 377.150 kb on - strand at 377.170 kb on + strand at 377.170 kb on + strand at 377.170 kb on + strand at 377.171 kb on - strand at 377.171 kb on - strand at 377.171 kb on - strand at 377.174 kb on - strand at 377.196 kb on + strand at 377.197 kb on - strand at 377.211 kb on + strand at 377.247 kb on + strand at 377.248 kb on - strand at 377.248 kb on - strand at 377.248 kb on - strand at 377.321 kb on + strand, within AO353_01800 at 377.322 kb on - strand, within AO353_01800 at 377.333 kb on + strand, within AO353_01800 at 377.333 kb on + strand, within AO353_01800 at 377.333 kb on + strand, within AO353_01800 at 377.333 kb on + strand, within AO353_01800 at 377.333 kb on + strand, within AO353_01800 at 377.334 kb on - strand, within AO353_01800 at 377.334 kb on - strand, within AO353_01800 at 377.334 kb on - strand, within AO353_01800 at 377.334 kb on - strand, within AO353_01800 at 377.334 kb on - strand, within AO353_01800 at 377.334 kb on - strand, within AO353_01800 at 377.334 kb on - strand, within AO353_01800 at 377.525 kb on + strand, within AO353_01800 at 377.525 kb on + strand, within AO353_01800 at 377.525 kb on + strand, within AO353_01800 at 377.526 kb on - strand, within AO353_01800 at 377.526 kb on - strand, within AO353_01800 at 377.573 kb on + strand, within AO353_01800 at 377.573 kb on + strand, within AO353_01800 at 377.573 kb on + strand, within AO353_01800 at 377.574 kb on - strand, within AO353_01800 at 377.574 kb on - strand, within AO353_01800 at 377.592 kb on + strand at 377.592 kb on + strand at 377.592 kb on + strand at 377.593 kb on - strand at 377.613 kb on + strand at 377.613 kb on + strand at 377.613 kb on + strand at 377.614 kb on - strand at 377.614 kb on - strand at 377.614 kb on - strand at 377.614 kb on - strand at 377.614 kb on - strand at 377.668 kb on + strand at 377.668 kb on + strand at 377.668 kb on + strand at 377.668 kb on + strand at 377.668 kb on + strand at 377.668 kb on + strand at 377.668 kb on + strand at 377.668 kb on + strand at 377.668 kb on + strand at 377.668 kb on + strand at 377.668 kb on + strand at 377.668 kb on + strand at 377.669 kb on - strand at 377.669 kb on - strand at 377.669 kb on - strand at 377.669 kb on - strand at 377.669 kb on - strand at 377.669 kb on - strand at 377.669 kb on - strand at 377.669 kb on - strand at 377.669 kb on - strand at 377.669 kb on - strand at 377.669 kb on - strand at 377.669 kb on - strand at 377.669 kb on - strand at 377.669 kb on - strand at 377.669 kb on - strand at 377.669 kb on - strand at 377.669 kb on - strand at 377.669 kb on - strand at 377.676 kb on + strand at 377.676 kb on + strand at 377.676 kb on + strand at 377.676 kb on + strand at 377.676 kb on + strand at 377.676 kb on + strand at 377.677 kb on - strand at 377.677 kb on - strand at 377.710 kb on - strand, within AO353_01805 at 377.791 kb on + strand, within AO353_01805 at 377.791 kb on + strand, within AO353_01805 at 377.791 kb on + strand, within AO353_01805 at 377.792 kb on - strand, within AO353_01805 at 377.792 kb on - strand, within AO353_01805 at 377.794 kb on + strand, within AO353_01805 at 377.795 kb on - strand, within AO353_01805 at 377.795 kb on - strand, within AO353_01805 at 377.938 kb on + strand, within AO353_01805 at 377.938 kb on + strand, within AO353_01805 at 377.938 kb on + strand, within AO353_01805 at 377.938 kb on + strand, within AO353_01805 at 377.938 kb on + strand, within AO353_01805 at 377.939 kb on - strand, within AO353_01805 at 377.939 kb on - strand, within AO353_01805 at 377.939 kb on - strand, within AO353_01805 at 377.974 kb on + strand, within AO353_01805 at 377.975 kb on - strand, within AO353_01805 at 378.057 kb on + strand, within AO353_01805 at 378.099 kb on - strand, within AO353_01805 at 378.272 kb on + strand, within AO353_01805 at 378.272 kb on + strand, within AO353_01805 at 378.286 kb on + strand at 378.286 kb on + strand at 378.302 kb on + strand at 378.302 kb on + strand at 378.303 kb on - strand at 378.303 kb on - strand at 378.303 kb on - strand at 378.303 kb on - strand at 378.326 kb on + strand at 378.326 kb on + strand at 378.327 kb on - strand at 378.327 kb on - strand at 378.327 kb on - strand at 378.369 kb on + strand at 378.395 kb on - strand at 378.450 kb on + strand at 378.450 kb on + strand at 378.450 kb on + strand at 378.450 kb on + strand at 378.450 kb on + strand at 378.450 kb on + strand at 378.450 kb on + strand at 378.450 kb on + strand at 378.450 kb on + strand at 378.450 kb on + strand at 378.450 kb on + strand at 378.450 kb on + strand at 378.451 kb on - strand at 378.451 kb on - strand at 378.451 kb on - strand at 378.451 kb on - strand at 378.451 kb on - strand at 378.451 kb on - strand at 378.451 kb on - strand at 378.451 kb on - strand at 378.451 kb on - strand at 378.451 kb on - strand at 378.451 kb on - strand at 378.451 kb on - strand at 378.451 kb on - strand at 378.451 kb on - strand at 378.451 kb on - strand at 378.451 kb on - strand at 378.480 kb on + strand at 378.480 kb on + strand at 378.480 kb on + strand at 378.480 kb on + strand at 378.480 kb on + strand at 378.480 kb on + strand at 378.480 kb on + strand at 378.480 kb on + strand at 378.481 kb on - strand at 378.481 kb on - strand at 378.481 kb on - strand at 378.481 kb on - strand at 378.486 kb on + strand at 378.486 kb on + strand at 378.486 kb on + strand at 378.487 kb on - strand at 378.557 kb on + strand at 378.557 kb on + strand at 378.558 kb on - strand at 378.987 kb on + strand, within AO353_01810 at 378.987 kb on + strand, within AO353_01810 at 378.987 kb on + strand, within AO353_01810 at 378.988 kb on - strand, within AO353_01810 at 378.988 kb on - strand, within AO353_01810 at 378.988 kb on - strand, within AO353_01810 at 379.014 kb on + strand, within AO353_01810 at 379.014 kb on + strand, within AO353_01810 at 379.015 kb on - strand, within AO353_01810 at 379.015 kb on - strand, within AO353_01810 at 379.119 kb on + strand, within AO353_01810 at 379.119 kb on + strand, within AO353_01810 at 379.119 kb on + strand, within AO353_01810 at 379.119 kb on + strand, within AO353_01810 at 379.119 kb on + strand, within AO353_01810 at 379.119 kb on + strand, within AO353_01810 at 379.120 kb on - strand, within AO353_01810 at 379.120 kb on - strand, within AO353_01810 at 379.120 kb on - strand, within AO353_01810 at 379.120 kb on - strand, within AO353_01810 at 379.120 kb on - strand, within AO353_01810 at 379.120 kb on - strand, within AO353_01810 at 379.120 kb on - strand, within AO353_01810 at 379.120 kb on - strand, within AO353_01810 at 379.120 kb on - strand, within AO353_01810 at 379.120 kb on - strand, within AO353_01810 at 379.148 kb on - strand, within AO353_01810 at 379.148 kb on - strand, within AO353_01810 at 379.200 kb on + strand, within AO353_01810 at 379.200 kb on + strand, within AO353_01810 at 379.200 kb on + strand, within AO353_01810 at 379.200 kb on + strand, within AO353_01810 at 379.200 kb on + strand, within AO353_01810 at 379.201 kb on - strand, within AO353_01810 at 379.201 kb on - strand, within AO353_01810 at 379.201 kb on - strand, within AO353_01810 at 379.347 kb on + strand, within AO353_01810 at 379.347 kb on + strand, within AO353_01810
Per-strain Table
Position Strand Gene LocusTag Fraction Nalidixic 0.004 mg/ml remove 376,631 - AO353_01790 0.75 +0.4 376,658 + AO353_01790 0.80 +0.1 376,658 + AO353_01790 0.80 +0.1 376,658 + AO353_01790 0.80 +0.7 376,658 + AO353_01790 0.80 +0.3 376,659 - AO353_01790 0.81 -0.1 376,659 - AO353_01790 0.81 +0.6 376,659 - AO353_01790 0.81 -1.8 376,659 - AO353_01790 0.81 +1.9 376,659 - AO353_01790 0.81 -0.9 376,677 + AO353_01790 0.84 -2.0 376,678 - AO353_01790 0.84 +2.1 376,769 + +0.3 376,770 - -0.9 376,770 - -1.4 376,791 - -1.4 376,816 - -0.9 376,819 + +1.3 376,820 - +1.9 376,826 + +0.1 376,826 + +1.1 376,828 + +0.9 376,828 + +0.6 376,828 + -0.3 376,828 + +0.2 376,828 + +0.6 376,828 + +0.5 376,829 - -0.4 376,829 - -1.0 376,829 - -1.4 376,829 - +0.1 376,829 - +1.4 376,829 - +0.5 376,829 - +0.6 376,830 + +0.3 376,830 + +1.1 376,830 + +0.1 376,831 - -0.2 376,831 - -0.1 376,831 - +0.6 376,836 + -0.6 376,852 + +0.7 376,852 + -0.7 376,853 - +0.9 376,883 + +0.5 376,883 + +0.0 376,883 + -0.4 376,884 - -1.3 376,884 - -0.1 376,884 - +0.3 376,884 - +2.9 376,884 - -0.1 376,884 - +0.9 376,884 - -0.9 376,887 + +0.6 376,887 + +1.5 376,917 + -0.1 376,918 - -1.4 376,925 + +0.1 376,925 + +0.3 376,925 + +0.7 376,925 + -0.1 376,925 + -1.4 376,925 + +1.6 376,925 + +1.3 376,925 + -1.1 376,926 - -1.9 376,926 - -0.9 376,926 - -0.1 376,926 - -1.3 376,929 + +0.6 376,930 - +0.2 377,052 + AO353_01795 0.58 +0.9 377,052 + AO353_01795 0.58 +0.5 377,102 + AO353_01795 0.79 -1.1 377,103 - AO353_01795 0.80 -0.3 377,121 + AO353_01795 0.87 -1.7 377,121 + AO353_01795 0.87 +1.9 377,121 + AO353_01795 0.87 -0.7 377,140 - +0.9 377,149 + +0.9 377,149 + +0.3 377,150 - +0.3 377,170 + -0.4 377,170 + -0.4 377,170 + +0.1 377,171 - -1.4 377,171 - -0.1 377,171 - -0.8 377,174 - -1.1 377,196 + -0.1 377,197 - -1.9 377,211 + -1.1 377,247 + -0.0 377,248 - -1.3 377,248 - +1.7 377,248 - +1.9 377,321 + AO353_01800 0.26 +0.9 377,322 - AO353_01800 0.26 -0.3 377,333 + AO353_01800 0.29 -0.1 377,333 + AO353_01800 0.29 -0.7 377,333 + AO353_01800 0.29 +1.7 377,333 + AO353_01800 0.29 +1.4 377,333 + AO353_01800 0.29 +0.9 377,334 - AO353_01800 0.29 +0.6 377,334 - AO353_01800 0.29 -0.8 377,334 - AO353_01800 0.29 -0.3 377,334 - AO353_01800 0.29 -0.5 377,334 - AO353_01800 0.29 +0.9 377,334 - AO353_01800 0.29 +0.1 377,334 - AO353_01800 0.29 -1.1 377,525 + AO353_01800 0.76 +0.9 377,525 + AO353_01800 0.76 +0.6 377,525 + AO353_01800 0.76 -0.9 377,526 - AO353_01800 0.77 +0.9 377,526 - AO353_01800 0.77 +1.6 377,573 + AO353_01800 0.88 +1.5 377,573 + AO353_01800 0.88 -0.7 377,573 + AO353_01800 0.88 -0.3 377,574 - AO353_01800 0.89 -0.9 377,574 - AO353_01800 0.89 +0.0 377,592 + +0.2 377,592 + +0.9 377,592 + +1.3 377,593 - +0.7 377,613 + -0.1 377,613 + -0.3 377,613 + -0.4 377,614 - +0.4 377,614 - -0.8 377,614 - +0.5 377,614 - -1.0 377,614 - +0.9 377,668 + +0.9 377,668 + -1.2 377,668 + -0.7 377,668 + +0.6 377,668 + +0.6 377,668 + +0.9 377,668 + +1.3 377,668 + -0.3 377,668 + +0.7 377,668 + -0.9 377,668 + +1.9 377,668 + +0.1 377,669 - -0.4 377,669 - -0.6 377,669 - -0.2 377,669 - +0.9 377,669 - +2.9 377,669 - +0.9 377,669 - -0.7 377,669 - +0.0 377,669 - +0.3 377,669 - +0.1 377,669 - +1.3 377,669 - +0.6 377,669 - +0.7 377,669 - +0.3 377,669 - -0.3 377,669 - -1.4 377,669 - +0.1 377,669 - -0.7 377,676 + -1.1 377,676 + -1.9 377,676 + +0.9 377,676 + -0.1 377,676 + +0.0 377,676 + +0.4 377,677 - +1.4 377,677 - +0.4 377,710 - AO353_01805 0.12 +1.7 377,791 + AO353_01805 0.23 +0.9 377,791 + AO353_01805 0.23 -0.3 377,791 + AO353_01805 0.23 +0.9 377,792 - AO353_01805 0.23 +2.5 377,792 - AO353_01805 0.23 +0.7 377,794 + AO353_01805 0.24 +0.3 377,795 - AO353_01805 0.24 +0.9 377,795 - AO353_01805 0.24 +0.9 377,938 + AO353_01805 0.43 -0.3 377,938 + AO353_01805 0.43 -0.5 377,938 + AO353_01805 0.43 +0.3 377,938 + AO353_01805 0.43 +1.9 377,938 + AO353_01805 0.43 +0.9 377,939 - AO353_01805 0.43 +0.2 377,939 - AO353_01805 0.43 +0.1 377,939 - AO353_01805 0.43 +0.0 377,974 + AO353_01805 0.48 -0.4 377,975 - AO353_01805 0.48 +0.1 378,057 + AO353_01805 0.59 +0.9 378,099 - AO353_01805 0.65 +3.9 378,272 + AO353_01805 0.88 -0.7 378,272 + AO353_01805 0.88 -1.3 378,286 + +0.7 378,286 + +0.9 378,302 + -0.1 378,302 + -0.7 378,303 - -0.7 378,303 - +2.5 378,303 - -0.1 378,303 - -1.7 378,326 + +1.3 378,326 + +1.7 378,327 - +0.5 378,327 - +1.5 378,327 - -0.7 378,369 + +0.4 378,395 - +1.2 378,450 + +1.9 378,450 + -1.6 378,450 + +0.9 378,450 + +0.9 378,450 + +1.3 378,450 + +0.5 378,450 + +1.1 378,450 + +0.1 378,450 + -0.4 378,450 + -0.3 378,450 + +0.6 378,450 + +2.6 378,451 - +0.9 378,451 - -1.4 378,451 - +0.3 378,451 - -1.0 378,451 - -0.1 378,451 - +0.3 378,451 - +2.1 378,451 - -1.4 378,451 - -0.1 378,451 - -0.4 378,451 - -0.9 378,451 - -1.2 378,451 - +0.3 378,451 - +0.1 378,451 - +0.1 378,451 - -0.4 378,480 + -1.7 378,480 + +0.2 378,480 + -0.0 378,480 + -0.1 378,480 + -2.1 378,480 + -0.6 378,480 + +1.0 378,480 + -0.1 378,481 - -1.4 378,481 - -0.8 378,481 - +0.1 378,481 - +1.5 378,486 + -0.2 378,486 + -0.5 378,486 + +0.4 378,487 - +1.9 378,557 + -0.1 378,557 + +2.2 378,558 - -0.7 378,987 + AO353_01810 0.29 +0.9 378,987 + AO353_01810 0.29 +0.6 378,987 + AO353_01810 0.29 -0.8 378,988 - AO353_01810 0.29 -0.7 378,988 - AO353_01810 0.29 -0.7 378,988 - AO353_01810 0.29 -0.7 379,014 + AO353_01810 0.31 +0.5 379,014 + AO353_01810 0.31 -1.9 379,015 - AO353_01810 0.31 -1.4 379,015 - AO353_01810 0.31 +0.0 379,119 + AO353_01810 0.39 -0.4 379,119 + AO353_01810 0.39 -0.7 379,119 + AO353_01810 0.39 -0.2 379,119 + AO353_01810 0.39 -0.7 379,119 + AO353_01810 0.39 -1.3 379,119 + AO353_01810 0.39 +1.9 379,120 - AO353_01810 0.39 -0.3 379,120 - AO353_01810 0.39 -0.4 379,120 - AO353_01810 0.39 +0.9 379,120 - AO353_01810 0.39 +0.9 379,120 - AO353_01810 0.39 -1.3 379,120 - AO353_01810 0.39 +0.1 379,120 - AO353_01810 0.39 +0.9 379,120 - AO353_01810 0.39 -0.1 379,120 - AO353_01810 0.39 -1.1 379,120 - AO353_01810 0.39 -0.1 379,148 - AO353_01810 0.41 +0.1 379,148 - AO353_01810 0.41 -1.1 379,200 + AO353_01810 0.45 -1.1 379,200 + AO353_01810 0.45 +0.5 379,200 + AO353_01810 0.45 -2.8 379,200 + AO353_01810 0.45 +0.3 379,200 + AO353_01810 0.45 +0.1 379,201 - AO353_01810 0.45 +0.1 379,201 - AO353_01810 0.45 +0.2 379,201 - AO353_01810 0.45 -0.1 379,347 + AO353_01810 0.56 +0.9 379,347 + AO353_01810 0.56 +1.7
Or see this region's nucleotide sequence