Experiment: Nalidixic 0.004 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AO353_00345 and AO353_00350 are separated by 61 nucleotides AO353_00350 and AO353_00355 are separated by 155 nucleotides AO353_00355 and AO353_00360 overlap by 1 nucleotides
AO353_00345: AO353_00345 - NADPH-dependent 7-cyano-7-deazaguanine reductase, at 62,596 to 63,426
_00345
AO353_00350: AO353_00350 - copper-binding protein, at 63,488 to 64,045
_00350
AO353_00355: AO353_00355 - transcriptional regulator, at 64,201 to 64,881
_00355
AO353_00360: AO353_00360 - ATPase, at 64,881 to 66,242
_00360
Position (kb) 63
64
65 Strain fitness (log2 ratio) -2
-1
0
1
2 at 62.494 kb on - strand at 62.494 kb on - strand at 62.514 kb on + strand at 62.514 kb on + strand at 62.515 kb on - strand at 62.569 kb on + strand at 62.569 kb on + strand at 62.591 kb on + strand at 62.591 kb on + strand at 62.591 kb on + strand at 62.591 kb on + strand at 62.591 kb on + strand at 62.591 kb on + strand at 62.591 kb on + strand at 62.591 kb on + strand at 62.591 kb on + strand at 62.591 kb on + strand at 62.591 kb on + strand at 62.591 kb on + strand at 62.591 kb on + strand at 62.592 kb on - strand at 62.592 kb on - strand at 62.592 kb on - strand at 62.597 kb on + strand at 62.681 kb on + strand, within AO353_00345 at 62.690 kb on + strand, within AO353_00345 at 62.690 kb on + strand, within AO353_00345 at 62.690 kb on + strand, within AO353_00345 at 62.690 kb on + strand, within AO353_00345 at 62.691 kb on - strand, within AO353_00345 at 62.691 kb on - strand, within AO353_00345 at 62.691 kb on - strand, within AO353_00345 at 62.746 kb on + strand, within AO353_00345 at 62.746 kb on + strand, within AO353_00345 at 62.793 kb on - strand, within AO353_00345 at 62.793 kb on - strand, within AO353_00345 at 62.963 kb on + strand, within AO353_00345 at 62.963 kb on + strand, within AO353_00345 at 62.963 kb on + strand, within AO353_00345 at 62.963 kb on + strand, within AO353_00345 at 63.013 kb on + strand, within AO353_00345 at 63.013 kb on + strand, within AO353_00345 at 63.013 kb on + strand, within AO353_00345 at 63.014 kb on - strand, within AO353_00345 at 63.014 kb on - strand, within AO353_00345 at 63.051 kb on + strand, within AO353_00345 at 63.155 kb on + strand, within AO353_00345 at 63.291 kb on - strand, within AO353_00345 at 63.291 kb on - strand, within AO353_00345 at 63.291 kb on - strand, within AO353_00345 at 63.291 kb on - strand, within AO353_00345 at 63.368 kb on + strand at 63.368 kb on + strand at 63.368 kb on + strand at 63.369 kb on - strand at 63.369 kb on - strand at 63.369 kb on - strand at 63.380 kb on + strand at 63.380 kb on + strand at 63.381 kb on - strand at 63.381 kb on - strand at 63.381 kb on - strand at 63.460 kb on - strand at 63.460 kb on - strand at 63.489 kb on + strand at 63.490 kb on - strand at 63.490 kb on - strand at 63.517 kb on + strand at 63.517 kb on + strand at 63.517 kb on + strand at 63.517 kb on + strand at 63.517 kb on + strand at 63.517 kb on + strand at 63.517 kb on + strand at 63.518 kb on - strand at 63.518 kb on - strand at 63.518 kb on - strand at 63.529 kb on - strand at 63.542 kb on - strand at 63.542 kb on - strand at 63.542 kb on - strand at 63.822 kb on - strand, within AO353_00350 at 63.822 kb on - strand, within AO353_00350 at 63.832 kb on + strand, within AO353_00350 at 63.833 kb on - strand, within AO353_00350 at 63.898 kb on + strand, within AO353_00350 at 63.898 kb on + strand, within AO353_00350 at 63.898 kb on + strand, within AO353_00350 at 63.898 kb on + strand, within AO353_00350 at 63.898 kb on + strand, within AO353_00350 at 63.899 kb on - strand, within AO353_00350 at 63.899 kb on - strand, within AO353_00350 at 63.899 kb on - strand, within AO353_00350 at 63.899 kb on - strand, within AO353_00350 at 63.899 kb on - strand, within AO353_00350 at 63.899 kb on - strand, within AO353_00350 at 63.963 kb on + strand, within AO353_00350 at 63.963 kb on + strand, within AO353_00350 at 63.963 kb on + strand, within AO353_00350 at 63.963 kb on + strand, within AO353_00350 at 63.963 kb on + strand, within AO353_00350 at 63.964 kb on - strand, within AO353_00350 at 63.964 kb on - strand, within AO353_00350 at 63.964 kb on - strand, within AO353_00350 at 64.022 kb on + strand at 64.023 kb on - strand at 64.088 kb on + strand at 64.088 kb on + strand at 64.089 kb on - strand at 64.089 kb on - strand at 64.091 kb on + strand at 64.091 kb on + strand at 64.091 kb on + strand at 64.091 kb on + strand at 64.091 kb on + strand at 64.091 kb on + strand at 64.092 kb on - strand at 64.092 kb on - strand at 64.125 kb on + strand at 64.125 kb on + strand at 64.126 kb on - strand at 64.126 kb on - strand at 64.126 kb on - strand at 64.136 kb on - strand at 64.136 kb on - strand at 64.166 kb on + strand at 64.166 kb on + strand at 64.166 kb on + strand at 64.166 kb on + strand at 64.167 kb on - strand at 64.167 kb on - strand at 64.168 kb on + strand at 64.197 kb on - strand at 64.243 kb on + strand at 64.243 kb on + strand at 64.243 kb on + strand at 64.244 kb on - strand at 64.244 kb on - strand at 64.244 kb on - strand at 64.333 kb on + strand, within AO353_00355 at 64.334 kb on - strand, within AO353_00355 at 64.493 kb on - strand, within AO353_00355 at 64.547 kb on + strand, within AO353_00355 at 64.547 kb on + strand, within AO353_00355 at 64.547 kb on + strand, within AO353_00355 at 64.548 kb on - strand, within AO353_00355 at 64.836 kb on + strand at 64.841 kb on + strand at 64.842 kb on - strand at 64.856 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Nalidixic 0.004 mg/ml remove 62,494 - -1.5 62,494 - -0.1 62,514 + -0.5 62,514 + +0.5 62,515 - +0.3 62,569 + -0.4 62,569 + +1.4 62,591 + +0.4 62,591 + +0.9 62,591 + -0.4 62,591 + -0.1 62,591 + -1.5 62,591 + -1.3 62,591 + +0.2 62,591 + -1.7 62,591 + -0.1 62,591 + -0.1 62,591 + -1.1 62,591 + -0.6 62,591 + -1.0 62,592 - -0.6 62,592 - +0.3 62,592 - -0.5 62,597 + +1.9 62,681 + AO353_00345 0.10 +1.1 62,690 + AO353_00345 0.11 +0.5 62,690 + AO353_00345 0.11 +0.6 62,690 + AO353_00345 0.11 +0.2 62,690 + AO353_00345 0.11 +0.4 62,691 - AO353_00345 0.11 +1.3 62,691 - AO353_00345 0.11 +0.9 62,691 - AO353_00345 0.11 +0.6 62,746 + AO353_00345 0.18 +1.9 62,746 + AO353_00345 0.18 -1.1 62,793 - AO353_00345 0.24 +0.9 62,793 - AO353_00345 0.24 +1.9 62,963 + AO353_00345 0.44 +1.3 62,963 + AO353_00345 0.44 +1.2 62,963 + AO353_00345 0.44 +0.2 62,963 + AO353_00345 0.44 -1.0 63,013 + AO353_00345 0.50 +1.7 63,013 + AO353_00345 0.50 +0.9 63,013 + AO353_00345 0.50 +1.5 63,014 - AO353_00345 0.50 -1.1 63,014 - AO353_00345 0.50 -0.7 63,051 + AO353_00345 0.55 +1.0 63,155 + AO353_00345 0.67 +1.4 63,291 - AO353_00345 0.84 +0.5 63,291 - AO353_00345 0.84 -0.5 63,291 - AO353_00345 0.84 +2.4 63,291 - AO353_00345 0.84 +0.5 63,368 + +1.1 63,368 + -0.1 63,368 + +0.0 63,369 - +2.0 63,369 - +0.9 63,369 - -0.5 63,380 + +0.9 63,380 + -2.6 63,381 - +0.5 63,381 - -0.1 63,381 - +0.9 63,460 - +0.4 63,460 - -1.1 63,489 + -1.0 63,490 - +0.0 63,490 - -2.1 63,517 + +1.1 63,517 + +0.1 63,517 + -0.7 63,517 + +0.9 63,517 + +0.9 63,517 + +0.3 63,517 + +0.0 63,518 - +1.3 63,518 - +1.6 63,518 - +1.4 63,529 - +0.1 63,542 - +2.2 63,542 - -0.9 63,542 - +0.4 63,822 - AO353_00350 0.60 -0.5 63,822 - AO353_00350 0.60 +0.3 63,832 + AO353_00350 0.62 -1.7 63,833 - AO353_00350 0.62 +0.2 63,898 + AO353_00350 0.73 +1.0 63,898 + AO353_00350 0.73 -0.8 63,898 + AO353_00350 0.73 -0.1 63,898 + AO353_00350 0.73 -0.1 63,898 + AO353_00350 0.73 -0.1 63,899 - AO353_00350 0.74 +0.9 63,899 - AO353_00350 0.74 +0.9 63,899 - AO353_00350 0.74 -1.8 63,899 - AO353_00350 0.74 -0.3 63,899 - AO353_00350 0.74 +1.1 63,899 - AO353_00350 0.74 +0.5 63,963 + AO353_00350 0.85 -0.1 63,963 + AO353_00350 0.85 +2.1 63,963 + AO353_00350 0.85 +2.2 63,963 + AO353_00350 0.85 +0.3 63,963 + AO353_00350 0.85 -1.1 63,964 - AO353_00350 0.85 +0.3 63,964 - AO353_00350 0.85 -0.7 63,964 - AO353_00350 0.85 +2.4 64,022 + -0.4 64,023 - +0.9 64,088 + -0.1 64,088 + +0.3 64,089 - -0.7 64,089 - +2.4 64,091 + +0.6 64,091 + +0.1 64,091 + +1.5 64,091 + +0.7 64,091 + -0.3 64,091 + -2.0 64,092 - -1.7 64,092 - -0.1 64,125 + +1.7 64,125 + +1.5 64,126 - +0.8 64,126 - -1.7 64,126 - +0.5 64,136 - -0.7 64,136 - +2.2 64,166 + -0.7 64,166 + -2.1 64,166 + -1.0 64,166 + +0.4 64,167 - +0.9 64,167 - +0.9 64,168 + -0.4 64,197 - +1.9 64,243 + +0.4 64,243 + +0.5 64,243 + -0.4 64,244 - +0.4 64,244 - -0.8 64,244 - -1.1 64,333 + AO353_00355 0.19 -0.6 64,334 - AO353_00355 0.20 +0.7 64,493 - AO353_00355 0.43 +0.3 64,547 + AO353_00355 0.51 -1.8 64,547 + AO353_00355 0.51 -0.7 64,547 + AO353_00355 0.51 -0.5 64,548 - AO353_00355 0.51 -1.1 64,836 + -0.1 64,841 + +1.4 64,842 - +1.3 64,856 - +0.4
Or see this region's nucleotide sequence