Strain Fitness in Desulfovibrio vulgaris Hildenborough JW710 around DVU2890

Experiment: MoYLS4 with Ethanol 2%

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	MoYLS4 with Ethanol 2%
2,987,183	-		DVU2888	0.86	-0.5
2,987,230	+				-0.5
2,987,230	+				-0.5
2,987,262	+				+0.3
2,987,289	+				-0.3
2,987,297	-				+0.2
2,987,471	+		DVU2889	0.33	-0.2
2,987,509	-		DVU2889	0.40	-0.5
2,987,574	-		DVU2889	0.52	-0.1
2,987,649	+		DVU2889	0.65	+0.5
2,987,717	+		DVU2889	0.78	-1.3
2,987,899	-				-0.2
2,987,984	-				-0.1
2,988,085	-				-0.1
2,988,086	+				-0.8
2,988,086	+				-0.2
2,988,087	+				-1.2
2,988,224	-		DVU2890	0.25	-0.4
2,988,293	+		DVU2890	0.35	+0.1
2,988,331	+		DVU2890	0.41	-1.4
2,988,370	-		DVU2890	0.46	-0.3
2,988,385	-		DVU2890	0.49	-1.6
2,988,391	-		DVU2890	0.49	-1.4
2,988,396	-		DVU2890	0.50	-0.4
2,988,396	-		DVU2890	0.50	+0.3
2,988,443	+		DVU2890	0.57	+0.2
2,988,451	-		DVU2890	0.58	-0.5
2,988,480	+		DVU2890	0.62	+0.3
2,988,586	+		DVU2890	0.78	+0.0
2,988,702	-				-0.2
2,988,715	+				+0.1
2,988,846	+	nikR	DVU2891	0.22	-0.7
2,988,937	+	nikR	DVU2891	0.43	-0.3
2,988,949	+	nikR	DVU2891	0.46	-0.4
2,988,957	-	nikR	DVU2891	0.48	-1.3
2,988,968	-	nikR	DVU2891	0.51	-1.0
2,989,055	-	nikR	DVU2891	0.71	-1.1
2,989,104	+	nikR	DVU2891	0.83	-0.5
2,989,113	-	nikR	DVU2891	0.85	-0.9
2,989,140	-				-0.1
2,989,162	+				-0.9
2,989,162	+				-1.3