Experiment: D-Cycloserine 0.015625 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Synpcc7942_B2615 and parB are separated by 102 nucleotides parB and parA overlap by 4 nucleotides
Synpcc7942_B2615: Synpcc7942_B2615 - hypothetical protein, at 65 to 394
_B2615
Synpcc7942_B2626: parB - hypothetical protein, at 497 to 1,321
parB
Synpcc7942_B2637: parA - ParA-like protein, at 1,318 to 1,929
parA
Position (kb) 0
1 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 0.018 kb on + strand at 0.042 kb on + strand at 0.051 kb on - strand at 0.052 kb on + strand at 0.053 kb on + strand at 0.060 kb on - strand at 0.060 kb on - strand at 0.070 kb on - strand at 0.070 kb on - strand at 0.071 kb on - strand at 0.072 kb on + strand at 0.077 kb on + strand at 0.085 kb on - strand at 0.088 kb on + strand at 0.096 kb on - strand at 0.133 kb on + strand, within Synpcc7942_B2615 at 0.133 kb on + strand, within Synpcc7942_B2615 at 0.133 kb on + strand, within Synpcc7942_B2615 at 0.133 kb on + strand, within Synpcc7942_B2615 at 0.141 kb on - strand, within Synpcc7942_B2615 at 0.141 kb on - strand, within Synpcc7942_B2615 at 0.143 kb on + strand, within Synpcc7942_B2615 at 0.143 kb on + strand, within Synpcc7942_B2615 at 0.143 kb on + strand, within Synpcc7942_B2615 at 0.151 kb on - strand, within Synpcc7942_B2615 at 0.151 kb on - strand, within Synpcc7942_B2615 at 0.151 kb on - strand, within Synpcc7942_B2615 at 0.151 kb on - strand, within Synpcc7942_B2615 at 0.151 kb on - strand, within Synpcc7942_B2615 at 0.158 kb on + strand, within Synpcc7942_B2615 at 0.158 kb on + strand, within Synpcc7942_B2615 at 0.166 kb on - strand, within Synpcc7942_B2615 at 0.207 kb on - strand, within Synpcc7942_B2615 at 0.207 kb on - strand, within Synpcc7942_B2615 at 0.214 kb on + strand, within Synpcc7942_B2615 at 0.221 kb on + strand, within Synpcc7942_B2615 at 0.221 kb on + strand, within Synpcc7942_B2615 at 0.221 kb on + strand, within Synpcc7942_B2615 at 0.229 kb on - strand, within Synpcc7942_B2615 at 0.229 kb on - strand at 0.229 kb on - strand, within Synpcc7942_B2615 at 0.229 kb on - strand, within Synpcc7942_B2615 at 0.229 kb on - strand, within Synpcc7942_B2615 at 0.229 kb on - strand, within Synpcc7942_B2615 at 0.240 kb on + strand, within Synpcc7942_B2615 at 0.247 kb on + strand, within Synpcc7942_B2615 at 0.247 kb on + strand, within Synpcc7942_B2615 at 0.248 kb on - strand, within Synpcc7942_B2615 at 0.255 kb on - strand, within Synpcc7942_B2615 at 0.255 kb on - strand, within Synpcc7942_B2615 at 0.255 kb on - strand, within Synpcc7942_B2615 at 0.255 kb on - strand, within Synpcc7942_B2615 at 0.255 kb on - strand, within Synpcc7942_B2615 at 0.257 kb on + strand, within Synpcc7942_B2615 at 0.257 kb on + strand, within Synpcc7942_B2615 at 0.257 kb on + strand, within Synpcc7942_B2615 at 0.304 kb on - strand, within Synpcc7942_B2615 at 0.322 kb on + strand, within Synpcc7942_B2615 at 0.360 kb on + strand, within Synpcc7942_B2615 at 0.360 kb on + strand, within Synpcc7942_B2615 at 0.360 kb on + strand, within Synpcc7942_B2615 at 0.373 kb on + strand at 0.373 kb on + strand at 0.373 kb on + strand at 0.373 kb on + strand at 0.373 kb on + strand at 0.373 kb on + strand at 0.373 kb on + strand at 0.373 kb on + strand at 0.373 kb on + strand at 0.373 kb on + strand at 0.381 kb on - strand at 0.381 kb on - strand at 0.381 kb on - strand at 0.381 kb on - strand at 0.381 kb on - strand at 0.381 kb on - strand at 0.396 kb on + strand at 0.401 kb on + strand at 0.401 kb on + strand at 0.401 kb on + strand at 0.401 kb on + strand at 0.401 kb on + strand at 0.404 kb on - strand at 0.404 kb on - strand at 0.407 kb on - strand at 0.409 kb on - strand at 0.409 kb on - strand at 0.409 kb on - strand at 0.414 kb on - strand at 0.414 kb on - strand at 0.414 kb on - strand at 0.431 kb on + strand at 0.495 kb on + strand at 0.495 kb on + strand at 0.495 kb on + strand at 0.495 kb on + strand at 0.510 kb on + strand at 0.512 kb on + strand at 0.514 kb on + strand at 0.565 kb on - strand at 0.601 kb on - strand, within parB at 0.651 kb on + strand, within parB at 0.680 kb on + strand, within parB at 0.748 kb on + strand, within parB at 0.756 kb on - strand, within parB at 0.855 kb on + strand, within parB at 0.877 kb on - strand, within parB at 1.007 kb on + strand, within parB at 1.192 kb on - strand, within parB at 1.218 kb on + strand, within parB at 1.293 kb on - strand at 1.293 kb on - strand at 1.295 kb on + strand at 1.303 kb on - strand at 1.340 kb on - strand at 1.362 kb on - strand at 1.380 kb on + strand, within parA at 1.380 kb on + strand, within parA at 1.382 kb on - strand, within parA
Per-strain Table
Position Strand Gene LocusTag Fraction D-Cycloserine 0.015625 mg/ml remove 18 + -0.0 42 + -0.4 51 - +0.3 52 + +0.3 53 + +0.7 60 - +0.5 60 - -3.5 70 - +1.4 70 - -1.1 71 - +0.7 72 + +1.5 77 + -0.2 85 - -0.5 88 + -0.7 96 - +0.8 133 + Synpcc7942_B2615 0.21 +1.7 133 + Synpcc7942_B2615 0.21 +0.5 133 + Synpcc7942_B2615 0.21 +0.1 133 + Synpcc7942_B2615 0.21 -1.1 141 - Synpcc7942_B2615 0.23 +1.1 141 - Synpcc7942_B2615 0.23 +0.4 143 + Synpcc7942_B2615 0.24 +0.5 143 + Synpcc7942_B2615 0.24 -1.3 143 + Synpcc7942_B2615 0.24 +1.3 151 - Synpcc7942_B2615 0.26 -1.6 151 - Synpcc7942_B2615 0.26 -0.8 151 - Synpcc7942_B2615 0.26 +0.1 151 - Synpcc7942_B2615 0.26 -0.9 151 - Synpcc7942_B2615 0.26 -0.3 158 + Synpcc7942_B2615 0.28 +0.5 158 + Synpcc7942_B2615 0.28 +1.2 166 - Synpcc7942_B2615 0.31 +0.5 207 - Synpcc7942_B2615 0.43 +0.5 207 - Synpcc7942_B2615 0.43 +1.4 214 + Synpcc7942_B2615 0.45 +1.3 221 + Synpcc7942_B2615 0.47 -0.5 221 + Synpcc7942_B2615 0.47 -0.5 221 + Synpcc7942_B2615 0.47 -0.3 229 - Synpcc7942_B2615 0.50 -0.3 229 - -0.5 229 - Synpcc7942_B2615 0.50 +1.3 229 - Synpcc7942_B2615 0.50 +0.3 229 - Synpcc7942_B2615 0.50 +0.2 229 - Synpcc7942_B2615 0.50 -1.9 240 + Synpcc7942_B2615 0.53 +1.6 247 + Synpcc7942_B2615 0.55 +2.3 247 + Synpcc7942_B2615 0.55 -0.9 248 - Synpcc7942_B2615 0.55 +1.7 255 - Synpcc7942_B2615 0.58 +1.5 255 - Synpcc7942_B2615 0.58 -1.4 255 - Synpcc7942_B2615 0.58 +1.1 255 - Synpcc7942_B2615 0.58 +1.7 255 - Synpcc7942_B2615 0.58 +0.5 257 + Synpcc7942_B2615 0.58 +0.1 257 + Synpcc7942_B2615 0.58 +0.4 257 + Synpcc7942_B2615 0.58 +0.3 304 - Synpcc7942_B2615 0.72 -0.5 322 + Synpcc7942_B2615 0.78 +2.1 360 + Synpcc7942_B2615 0.89 +0.2 360 + Synpcc7942_B2615 0.89 +0.5 360 + Synpcc7942_B2615 0.89 -0.1 373 + -0.5 373 + +0.8 373 + +0.5 373 + +0.3 373 + +1.2 373 + +1.8 373 + +0.5 373 + +0.6 373 + -0.8 373 + +0.1 381 - +0.1 381 - +1.2 381 - +0.9 381 - +0.1 381 - +0.1 381 - -0.5 396 + +0.4 401 + -0.4 401 + +1.1 401 + -1.1 401 + -0.1 401 + -0.5 404 - +0.4 404 - +0.6 407 - -0.2 409 - +1.4 409 - +1.5 409 - +0.5 414 - -0.8 414 - -1.1 414 - +0.5 431 + -2.4 495 + +1.9 495 + +1.3 495 + +0.4 495 + +0.1 510 + -0.0 512 + -0.7 514 + +0.0 565 - -0.8 601 - parB Synpcc7942_B2626 0.13 -2.5 651 + parB Synpcc7942_B2626 0.19 -1.3 680 + parB Synpcc7942_B2626 0.22 -0.1 748 + parB Synpcc7942_B2626 0.30 +0.8 756 - parB Synpcc7942_B2626 0.31 -1.5 855 + parB Synpcc7942_B2626 0.43 -1.1 877 - parB Synpcc7942_B2626 0.46 -0.8 1,007 + parB Synpcc7942_B2626 0.62 -1.8 1,192 - parB Synpcc7942_B2626 0.84 -1.3 1,218 + parB Synpcc7942_B2626 0.87 +1.5 1,293 - -0.5 1,293 - +0.5 1,295 + +0.5 1,303 - -0.2 1,340 - +0.3 1,362 - +1.5 1,380 + parA Synpcc7942_B2637 0.10 +0.5 1,380 + parA Synpcc7942_B2637 0.10 +0.5 1,382 - parA Synpcc7942_B2637 0.10 +0.2
Or see this region's nucleotide sequence