Experiment: D-Cycloserine 0.015625 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt rbcR and Synpcc7942_1981 overlap by 4 nucleotides Synpcc7942_1981 and Synpcc7942_1982 overlap by 1 nucleotides Synpcc7942_1982 and pds are separated by 149 nucleotides
Synpcc7942_1980: rbcR - transcriptional regulator, LysR family, at 2,050,905 to 2,051,894
rbcR
Synpcc7942_1981: Synpcc7942_1981 - hypothetical protein, at 2,051,891 to 2,052,499
_1981
Synpcc7942_1982: Synpcc7942_1982 - NADH dehydrogenase I subunit M, at 2,052,499 to 2,052,831
_1982
Synpcc7942_1983: pds - zeta-carotene desaturase / three-step phytoene desaturase, at 2,052,981 to 2,054,405
pds
Position (kb)
2051
2052
2053 Strain fitness (log2 ratio)
-4
-3
-2
-1
0
1 at 2050.897 kb on - strand at 2050.907 kb on - strand at 2051.842 kb on - strand at 2051.858 kb on + strand at 2051.864 kb on + strand at 2051.889 kb on + strand at 2051.889 kb on + strand at 2051.924 kb on + strand at 2051.955 kb on + strand, within Synpcc7942_1981 at 2051.955 kb on + strand, within Synpcc7942_1981 at 2051.963 kb on - strand, within Synpcc7942_1981 at 2052.016 kb on + strand, within Synpcc7942_1981 at 2052.027 kb on + strand, within Synpcc7942_1981 at 2052.027 kb on + strand, within Synpcc7942_1981 at 2052.027 kb on + strand, within Synpcc7942_1981 at 2052.035 kb on - strand, within Synpcc7942_1981 at 2052.035 kb on - strand, within Synpcc7942_1981 at 2052.035 kb on - strand, within Synpcc7942_1981 at 2052.050 kb on + strand, within Synpcc7942_1981 at 2052.050 kb on + strand, within Synpcc7942_1981 at 2052.058 kb on - strand, within Synpcc7942_1981 at 2052.060 kb on + strand, within Synpcc7942_1981 at 2052.068 kb on - strand, within Synpcc7942_1981 at 2052.068 kb on - strand, within Synpcc7942_1981 at 2052.068 kb on - strand, within Synpcc7942_1981 at 2052.088 kb on - strand, within Synpcc7942_1981 at 2052.104 kb on + strand, within Synpcc7942_1981 at 2052.112 kb on - strand, within Synpcc7942_1981 at 2052.124 kb on - strand, within Synpcc7942_1981 at 2052.180 kb on - strand, within Synpcc7942_1981 at 2052.230 kb on - strand, within Synpcc7942_1981 at 2052.264 kb on + strand, within Synpcc7942_1981 at 2052.291 kb on - strand, within Synpcc7942_1981 at 2052.308 kb on - strand, within Synpcc7942_1981 at 2052.316 kb on + strand, within Synpcc7942_1981 at 2052.334 kb on + strand, within Synpcc7942_1981 at 2052.353 kb on - strand, within Synpcc7942_1981 at 2052.375 kb on + strand, within Synpcc7942_1981 at 2052.398 kb on + strand, within Synpcc7942_1981 at 2052.486 kb on - strand at 2052.496 kb on + strand at 2052.496 kb on + strand at 2052.496 kb on + strand at 2052.496 kb on + strand at 2052.496 kb on + strand at 2052.497 kb on + strand at 2052.507 kb on - strand at 2052.516 kb on - strand at 2052.521 kb on + strand at 2052.529 kb on - strand at 2052.889 kb on + strand at 2052.893 kb on + strand at 2052.894 kb on + strand at 2052.894 kb on + strand at 2052.901 kb on - strand at 2052.932 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction D-Cycloserine 0.015625 mg/ml remove 2,050,897 - -1.3 2,050,907 - -0.1 2,051,842 - -2.9 2,051,858 + -1.4 2,051,864 + +0.3 2,051,889 + -0.1 2,051,889 + +1.3 2,051,924 + -2.4 2,051,955 + Synpcc7942_1981 0.11 -1.7 2,051,955 + Synpcc7942_1981 0.11 -1.7 2,051,963 - Synpcc7942_1981 0.12 -2.7 2,052,016 + Synpcc7942_1981 0.21 -3.1 2,052,027 + Synpcc7942_1981 0.22 -3.1 2,052,027 + Synpcc7942_1981 0.22 -1.1 2,052,027 + Synpcc7942_1981 0.22 -3.5 2,052,035 - Synpcc7942_1981 0.24 -3.5 2,052,035 - Synpcc7942_1981 0.24 -3.7 2,052,035 - Synpcc7942_1981 0.24 -1.7 2,052,050 + Synpcc7942_1981 0.26 -1.7 2,052,050 + Synpcc7942_1981 0.26 -2.4 2,052,058 - Synpcc7942_1981 0.27 -0.8 2,052,060 + Synpcc7942_1981 0.28 -1.1 2,052,068 - Synpcc7942_1981 0.29 +1.3 2,052,068 - Synpcc7942_1981 0.29 -2.1 2,052,068 - Synpcc7942_1981 0.29 -4.2 2,052,088 - Synpcc7942_1981 0.32 -2.1 2,052,104 + Synpcc7942_1981 0.35 -0.7 2,052,112 - Synpcc7942_1981 0.36 -1.1 2,052,124 - Synpcc7942_1981 0.38 -2.4 2,052,180 - Synpcc7942_1981 0.47 -3.1 2,052,230 - Synpcc7942_1981 0.56 -1.1 2,052,264 + Synpcc7942_1981 0.61 -2.8 2,052,291 - Synpcc7942_1981 0.66 -4.2 2,052,308 - Synpcc7942_1981 0.68 -0.4 2,052,316 + Synpcc7942_1981 0.70 -0.1 2,052,334 + Synpcc7942_1981 0.73 -4.4 2,052,353 - Synpcc7942_1981 0.76 -0.8 2,052,375 + Synpcc7942_1981 0.79 -1.7 2,052,398 + Synpcc7942_1981 0.83 -2.9 2,052,486 - -3.2 2,052,496 + +0.8 2,052,496 + +0.3 2,052,496 + +1.0 2,052,496 + +1.5 2,052,496 + +0.5 2,052,497 + -0.7 2,052,507 - +1.7 2,052,516 - -2.1 2,052,521 + -1.7 2,052,529 - -0.1 2,052,889 + +0.6 2,052,893 + +0.4 2,052,894 + +0.3 2,052,894 + +1.3 2,052,901 - +0.4 2,052,932 - -1.7
Or see this region's nucleotide sequence