Strain Fitness in Synechococcus elongatus PCC 7942 around Synpcc7942_1534

Experiment: D-Cycloserine 0.015625 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	D-Cycloserine 0.015625 mg/ml
1,592,230	-				+0.4
1,592,249	+				-0.2
1,592,249	+				+0.6
1,592,271	+				+1.5
1,592,314	-				-1.6
1,592,327	+				-0.9
1,592,327	+				+0.9
1,592,335	-				-1.1
1,592,342	-	sdhB	Synpcc7942_1533	0.10	-1.4
1,592,390	+	sdhB	Synpcc7942_1533	0.16	-0.2
1,592,396	-	sdhB	Synpcc7942_1533	0.17	-2.1
1,592,398	-	sdhB	Synpcc7942_1533	0.17	+3.5
1,592,400	+	sdhB	Synpcc7942_1533	0.17	+1.2
1,592,400	+	sdhB	Synpcc7942_1533	0.17	-0.8
1,592,408	+	sdhB	Synpcc7942_1533	0.18	-2.9
1,592,408	-	sdhB	Synpcc7942_1533	0.18	+1.0
1,592,419	+	sdhB	Synpcc7942_1533	0.20	-0.1
1,592,445	+	sdhB	Synpcc7942_1533	0.23	-1.6
1,592,451	-	sdhB	Synpcc7942_1533	0.23	-0.1
1,592,460	-	sdhB	Synpcc7942_1533	0.25	+0.3
1,592,485	-	sdhB	Synpcc7942_1533	0.28	-1.1
1,592,489	+	sdhB	Synpcc7942_1533	0.28	-0.1
1,592,497	-	sdhB	Synpcc7942_1533	0.29	-1.1
1,592,551	-	sdhB	Synpcc7942_1533	0.35	+1.5
1,592,560	+	sdhB	Synpcc7942_1533	0.36	-1.1
1,592,596	+	sdhB	Synpcc7942_1533	0.41	-0.2
1,592,602	+	sdhB	Synpcc7942_1533	0.41	-0.9
1,592,647	-	sdhB	Synpcc7942_1533	0.47	-1.0
1,592,664	-	sdhB	Synpcc7942_1533	0.49	+0.1
1,592,664	-	sdhB	Synpcc7942_1533	0.49	+0.8
1,592,674	+	sdhB	Synpcc7942_1533	0.50	+1.3
1,592,674	+				+0.4
1,592,681	-	sdhB	Synpcc7942_1533	0.51	+1.5
1,592,682	-	sdhB	Synpcc7942_1533	0.51	+2.5
1,592,721	+	sdhB	Synpcc7942_1533	0.56	+1.3
1,592,728	+	sdhB	Synpcc7942_1533	0.56	-2.2
1,592,733	-	sdhB	Synpcc7942_1533	0.57	+1.1
1,592,733	-	sdhB	Synpcc7942_1533	0.57	+1.9
1,592,795	-	sdhB	Synpcc7942_1533	0.64	+1.7
1,592,848	-	sdhB	Synpcc7942_1533	0.71	-1.1
1,592,950	-	sdhB	Synpcc7942_1533	0.83	+2.9
1,592,961	+	sdhB	Synpcc7942_1533	0.84	+0.5
1,592,982	-	sdhB	Synpcc7942_1533	0.87	+0.9
1,592,982	-	sdhB	Synpcc7942_1533	0.87	-0.4
1,593,037	+				-1.6
1,593,042	+				+1.9
1,593,055	-				+2.7
1,593,096	-				-0.6
1,593,123	+				+0.8
1,593,123	+				-0.1
1,593,140	+				-0.5
1,593,171	+				+0.4
1,593,171	+				+0.5
1,593,179	-				-1.1
1,593,179	-				-0.4
1,593,179	-				-1.6
1,593,179	-				-0.8
1,593,179	-				+0.8
1,593,179	-				+0.1
1,593,189	-				+0.9
1,593,189	-				-1.1
1,593,218	+				-0.4
1,593,459	+		Synpcc7942_1534	0.11	+0.7
1,593,514	+		Synpcc7942_1534	0.14	+1.2
1,593,576	+		Synpcc7942_1534	0.16	+0.7
1,593,628	+		Synpcc7942_1534	0.19	+0.8
1,593,655	+		Synpcc7942_1534	0.20	+0.8
1,593,742	+		Synpcc7942_1534	0.24	+0.3
1,593,742	+		Synpcc7942_1534	0.24	-1.1
1,593,750	-		Synpcc7942_1534	0.24	+1.8
1,593,809	-		Synpcc7942_1534	0.27	+0.9
1,593,824	+		Synpcc7942_1534	0.28	-0.7
1,593,861	+		Synpcc7942_1534	0.29	-0.3
1,594,088	+		Synpcc7942_1534	0.40	+0.1
1,594,088	+		Synpcc7942_1534	0.40	+0.9
1,594,094	-		Synpcc7942_1534	0.40	+0.3
1,594,121	+		Synpcc7942_1534	0.41	-0.4
1,594,143	+		Synpcc7942_1534	0.42	+0.8
1,594,151	-		Synpcc7942_1534	0.42	+1.1
1,594,151	-		Synpcc7942_1534	0.42	+1.2
1,594,166	+		Synpcc7942_1534	0.43	-0.6
1,594,166	+		Synpcc7942_1534	0.43	-0.1
1,594,181	+		Synpcc7942_1534	0.44	+0.1
1,594,215	+		Synpcc7942_1534	0.45	+0.3
1,594,257	-		Synpcc7942_1534	0.47	+0.4
1,594,291	+		Synpcc7942_1534	0.49	+0.8
1,594,297	-		Synpcc7942_1534	0.49	-1.8
1,594,338	-		Synpcc7942_1534	0.51	+0.3
1,594,475	+		Synpcc7942_1534	0.57	+0.7
1,594,483	-		Synpcc7942_1534	0.57	+0.0
1,594,485	+		Synpcc7942_1534	0.58	+1.1
1,594,485	+				+1.5
1,594,619	-		Synpcc7942_1534	0.64	-0.5
1,594,781	-		Synpcc7942_1534	0.71	-0.4
1,594,841	-		Synpcc7942_1534	0.74	-1.1
1,594,848	+		Synpcc7942_1534	0.74	-0.1
1,594,850	+		Synpcc7942_1534	0.74	-2.2
1,594,882	-				+2.5
1,594,938	+		Synpcc7942_1534	0.78	-0.3
1,594,940	+		Synpcc7942_1534	0.78	+2.6
1,594,976	-		Synpcc7942_1534	0.80	+0.3
1,595,015	-		Synpcc7942_1534	0.82	+0.8
1,595,051	-		Synpcc7942_1534	0.83	-0.1
1,595,135	-		Synpcc7942_1534	0.87	+0.3
1,595,178	-		Synpcc7942_1534	0.89	+0.5
1,595,233	-				+1.2
1,595,337	-				+1.3
1,595,439	-				+1.5
1,595,477	+				-0.7
1,595,477	+				-1.1
1,595,485	-				+0.3
1,595,498	-				-0.1
1,595,530	-				+0.8
1,595,532	+	rbcX	Synpcc7942_1535	0.10	-1.1
1,595,576	-	rbcX	Synpcc7942_1535	0.20	-1.0
1,595,597	+	rbcX	Synpcc7942_1535	0.24	-1.7
1,595,622	+	rbcX	Synpcc7942_1535	0.30	-0.3
1,595,629	-	rbcX	Synpcc7942_1535	0.31	+1.1
1,595,666	-	rbcX	Synpcc7942_1535	0.39	+0.7
1,595,690	+	rbcX	Synpcc7942_1535	0.44	-0.7
1,595,700	-	rbcX	Synpcc7942_1535	0.47	+0.8
1,595,709	+	rbcX	Synpcc7942_1535	0.49	-1.1
1,595,722	+	rbcX	Synpcc7942_1535	0.51	-0.1
1,595,722	+	rbcX	Synpcc7942_1535	0.51	+1.3
1,595,730	-	rbcX	Synpcc7942_1535	0.53	+0.9
1,595,749	-	rbcX	Synpcc7942_1535	0.57	-0.2
1,595,791	+	rbcX	Synpcc7942_1535	0.66	-0.1
1,595,801	-	rbcX	Synpcc7942_1535	0.69	-2.1
1,595,844	+	rbcX	Synpcc7942_1535	0.78	-0.1
1,595,850	+	rbcX	Synpcc7942_1535	0.79	-0.6
1,595,911	-				+1.1
1,595,915	-				-0.9
1,595,971	+				+0.7
1,596,007	+	gat	Synpcc7942_1536	0.11	-0.9
1,596,019	+	gat	Synpcc7942_1536	0.12	+0.3
1,596,019	+	gat	Synpcc7942_1536	0.12	-0.7
1,596,027	-	gat	Synpcc7942_1536	0.14	-0.2
1,596,080	+	gat	Synpcc7942_1536	0.21	+0.0
1,596,095	+	gat	Synpcc7942_1536	0.24	-0.3
1,596,121	+	gat	Synpcc7942_1536	0.27	-1.7
1,596,129	-	gat	Synpcc7942_1536	0.29	+0.8
1,596,221	+	gat	Synpcc7942_1536	0.42	+0.9
1,596,221	+				+1.5
1,596,222	-	gat	Synpcc7942_1536	0.42	-0.6
1,596,222	-	gat	Synpcc7942_1536	0.42	-2.0
1,596,222	-	gat	Synpcc7942_1536	0.42	+1.7
1,596,273	+	gat	Synpcc7942_1536	0.50	-0.7
1,596,286	-	gat	Synpcc7942_1536	0.52	+0.2
1,596,343	+	gat	Synpcc7942_1536	0.60	+0.7
1,596,377	-	gat	Synpcc7942_1536	0.65	-0.8
1,596,421	-	gat	Synpcc7942_1536	0.72	+0.3