Experiment: D-Cycloserine 0.015625 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Synpcc7942_1469 and Synpcc7942_1470 overlap by 8 nucleotides Synpcc7942_1470 and Synpcc7942_1471 overlap by 4 nucleotides Synpcc7942_1471 and Synpcc7942_1472 overlap by 4 nucleotides Synpcc7942_1472 and ndhD5 overlap by 4 nucleotides ndhD5 and Synpcc7942_1474 overlap by 4 nucleotides Synpcc7942_1474 and sbtA are separated by 419 nucleotides
Synpcc7942_1469: Synpcc7942_1469 - hypothetical protein, at 1,522,138 to 1,522,719
_1469
Synpcc7942_1470: Synpcc7942_1470 - hypothetical protein, at 1,522,712 to 1,523,005
_1470
Synpcc7942_1471: Synpcc7942_1471 - hypothetical protein, at 1,523,002 to 1,523,259
_1471
Synpcc7942_1472: Synpcc7942_1472 - hypothetical protein, at 1,523,256 to 1,523,642
_1472
Synpcc7942_1473: ndhD5 - putative monovalent cation/H+ antiporter subunit D, at 1,523,639 to 1,525,081
ndhD5
Synpcc7942_1474: Synpcc7942_1474 - putative monovalent cation/H+ antiporter subunit C, at 1,525,078 to 1,525,413
_1474
Synpcc7942_1475: sbtA - sodium-dependent bicarbonate transporter, at 1,525,833 to 1,526,954
sbtA
Position (kb) 1523
1524
1525
1526 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 1522.720 kb on + strand at 1522.784 kb on + strand, within Synpcc7942_1470 at 1522.944 kb on - strand, within Synpcc7942_1470 at 1523.284 kb on + strand at 1523.330 kb on - strand, within Synpcc7942_1472 at 1523.378 kb on + strand, within Synpcc7942_1472 at 1523.854 kb on + strand, within ndhD5 at 1524.088 kb on - strand, within ndhD5 at 1524.214 kb on + strand, within ndhD5 at 1524.222 kb on - strand, within ndhD5 at 1524.315 kb on + strand, within ndhD5 at 1524.843 kb on - strand, within ndhD5 at 1524.860 kb on - strand, within ndhD5 at 1524.903 kb on - strand, within ndhD5 at 1524.977 kb on - strand at 1524.999 kb on - strand at 1525.083 kb on - strand at 1525.159 kb on - strand, within Synpcc7942_1474 at 1525.273 kb on - strand, within Synpcc7942_1474 at 1525.396 kb on + strand at 1525.767 kb on + strand at 1525.767 kb on + strand at 1525.804 kb on + strand at 1525.812 kb on - strand at 1525.934 kb on - strand at 1525.935 kb on - strand at 1526.020 kb on - strand, within sbtA at 1526.052 kb on + strand, within sbtA
Per-strain Table
Position Strand Gene LocusTag Fraction D-Cycloserine 0.015625 mg/ml remove 1,522,720 + -0.3 1,522,784 + Synpcc7942_1470 0.24 -2.9 1,522,944 - Synpcc7942_1470 0.79 -3.2 1,523,284 + -2.2 1,523,330 - Synpcc7942_1472 0.19 -3.2 1,523,378 + Synpcc7942_1472 0.32 -3.0 1,523,854 + ndhD5 Synpcc7942_1473 0.15 -2.4 1,524,088 - ndhD5 Synpcc7942_1473 0.31 -1.6 1,524,214 + ndhD5 Synpcc7942_1473 0.40 -1.4 1,524,222 - ndhD5 Synpcc7942_1473 0.40 -1.6 1,524,315 + ndhD5 Synpcc7942_1473 0.47 -1.6 1,524,843 - ndhD5 Synpcc7942_1473 0.83 -0.9 1,524,860 - ndhD5 Synpcc7942_1473 0.85 -3.2 1,524,903 - ndhD5 Synpcc7942_1473 0.88 -1.6 1,524,977 - -2.8 1,524,999 - -0.4 1,525,083 - +2.7 1,525,159 - Synpcc7942_1474 0.24 -1.1 1,525,273 - Synpcc7942_1474 0.58 -2.4 1,525,396 + -2.3 1,525,767 + -0.3 1,525,767 + +0.7 1,525,804 + +1.3 1,525,812 - -2.4 1,525,934 - -1.1 1,525,935 - -1.8 1,526,020 - sbtA Synpcc7942_1475 0.17 -2.8 1,526,052 + sbtA Synpcc7942_1475 0.20 -2.9
Or see this region's nucleotide sequence