Experiment: D-Cycloserine 0.015625 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt somB and somA are separated by 236 nucleotides somA and Synpcc7942_1465 are separated by 161 nucleotides Synpcc7942_1465 and cysM are separated by 214 nucleotides
Synpcc7942_1463: somB - probable porin, at 1,515,369 to 1,517,000
somB
Synpcc7942_1464: somA - probable porin, at 1,517,237 to 1,518,832
somA
Synpcc7942_1465: Synpcc7942_1465 - transcriptional regulator, BadM/Rrf2 family, at 1,518,994 to 1,519,449
_1465
Synpcc7942_1466: cysM - cysteine synthase, at 1,519,664 to 1,520,668
cysM
Position (kb) 1517
1518
1519 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2 at 1516.268 kb on + strand, within somB at 1516.271 kb on + strand, within somB at 1516.329 kb on + strand, within somB at 1516.337 kb on - strand, within somB at 1516.337 kb on - strand, within somB at 1516.367 kb on - strand, within somB at 1516.390 kb on - strand, within somB at 1516.394 kb on + strand, within somB at 1516.402 kb on - strand, within somB at 1516.406 kb on + strand at 1516.406 kb on + strand, within somB at 1516.407 kb on - strand, within somB at 1516.422 kb on - strand, within somB at 1516.444 kb on + strand, within somB at 1516.444 kb on + strand, within somB at 1516.452 kb on - strand, within somB at 1516.452 kb on - strand, within somB at 1516.461 kb on + strand, within somB at 1516.466 kb on + strand, within somB at 1516.466 kb on + strand, within somB at 1516.466 kb on + strand, within somB at 1516.466 kb on + strand, within somB at 1516.466 kb on + strand, within somB at 1516.466 kb on + strand, within somB at 1516.474 kb on - strand, within somB at 1516.474 kb on - strand, within somB at 1516.474 kb on - strand, within somB at 1516.474 kb on - strand, within somB at 1516.474 kb on - strand, within somB at 1516.474 kb on - strand, within somB at 1516.474 kb on - strand, within somB at 1516.474 kb on - strand, within somB at 1516.474 kb on - strand, within somB at 1516.486 kb on + strand, within somB at 1516.516 kb on + strand, within somB at 1516.567 kb on + strand, within somB at 1516.572 kb on + strand, within somB at 1516.572 kb on + strand, within somB at 1516.572 kb on + strand, within somB at 1516.577 kb on + strand, within somB at 1516.580 kb on - strand, within somB at 1516.580 kb on - strand, within somB at 1516.601 kb on - strand, within somB at 1516.610 kb on + strand, within somB at 1516.622 kb on + strand, within somB at 1516.628 kb on + strand, within somB at 1516.628 kb on + strand, within somB at 1516.638 kb on - strand, within somB at 1516.648 kb on - strand, within somB at 1516.672 kb on + strand, within somB at 1516.690 kb on + strand, within somB at 1516.710 kb on + strand, within somB at 1516.710 kb on + strand, within somB at 1516.715 kb on + strand, within somB at 1516.715 kb on + strand, within somB at 1516.715 kb on + strand, within somB at 1516.723 kb on - strand, within somB at 1516.737 kb on + strand, within somB at 1516.745 kb on + strand, within somB at 1516.771 kb on + strand, within somB at 1516.779 kb on - strand, within somB at 1516.781 kb on + strand, within somB at 1516.781 kb on + strand, within somB at 1516.783 kb on + strand, within somB at 1516.791 kb on + strand, within somB at 1516.804 kb on + strand, within somB at 1516.821 kb on + strand, within somB at 1516.824 kb on + strand, within somB at 1516.824 kb on + strand, within somB at 1516.894 kb on + strand at 1516.894 kb on + strand at 1516.910 kb on - strand at 1516.929 kb on + strand at 1516.937 kb on - strand at 1516.937 kb on - strand at 1517.003 kb on - strand at 1517.025 kb on - strand at 1517.042 kb on - strand at 1517.050 kb on + strand at 1517.058 kb on - strand at 1517.058 kb on - strand at 1517.094 kb on - strand at 1517.096 kb on + strand at 1517.312 kb on + strand at 1517.327 kb on - strand at 1517.367 kb on + strand at 1517.367 kb on + strand at 1517.485 kb on + strand, within somA at 1517.488 kb on - strand, within somA at 1517.539 kb on - strand, within somA at 1517.632 kb on - strand, within somA at 1517.675 kb on - strand, within somA at 1517.687 kb on + strand, within somA at 1517.693 kb on - strand, within somA at 1517.711 kb on - strand, within somA at 1517.717 kb on + strand, within somA at 1517.781 kb on + strand, within somA at 1517.808 kb on + strand, within somA at 1517.816 kb on - strand, within somA at 1517.880 kb on + strand, within somA at 1517.969 kb on + strand, within somA at 1518.025 kb on - strand, within somA at 1518.053 kb on + strand, within somA at 1518.060 kb on + strand, within somA at 1518.110 kb on + strand, within somA at 1518.180 kb on + strand, within somA at 1518.268 kb on - strand, within somA at 1518.268 kb on - strand, within somA at 1518.274 kb on - strand, within somA at 1518.277 kb on + strand, within somA at 1518.281 kb on - strand, within somA at 1518.309 kb on - strand, within somA at 1518.364 kb on + strand, within somA at 1518.364 kb on + strand, within somA at 1518.364 kb on + strand, within somA at 1518.364 kb on + strand, within somA at 1518.364 kb on + strand, within somA at 1518.364 kb on + strand, within somA at 1518.364 kb on + strand, within somA at 1518.364 kb on + strand, within somA at 1518.372 kb on - strand, within somA at 1518.372 kb on - strand, within somA at 1518.372 kb on - strand, within somA at 1518.372 kb on - strand, within somA at 1518.474 kb on - strand, within somA at 1518.560 kb on + strand, within somA at 1518.560 kb on + strand, within somA at 1518.568 kb on - strand, within somA at 1518.568 kb on - strand, within somA at 1518.568 kb on - strand, within somA at 1518.854 kb on - strand at 1518.891 kb on + strand at 1518.992 kb on - strand at 1519.002 kb on - strand at 1519.143 kb on + strand, within Synpcc7942_1465 at 1519.222 kb on - strand, within Synpcc7942_1465 at 1519.256 kb on + strand, within Synpcc7942_1465 at 1519.482 kb on + strand at 1519.605 kb on - strand at 1519.610 kb on + strand at 1519.617 kb on + strand at 1519.681 kb on + strand at 1519.689 kb on - strand at 1519.689 kb on - strand at 1519.696 kb on + strand at 1519.698 kb on + strand at 1519.711 kb on - strand at 1519.711 kb on - strand at 1519.725 kb on + strand at 1519.733 kb on - strand at 1519.756 kb on - strand at 1519.756 kb on - strand at 1519.757 kb on - strand at 1519.759 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction D-Cycloserine 0.015625 mg/ml remove 1,516,268 + somB Synpcc7942_1463 0.55 +0.1 1,516,271 + somB Synpcc7942_1463 0.55 -1.6 1,516,329 + somB Synpcc7942_1463 0.59 -0.1 1,516,337 - somB Synpcc7942_1463 0.59 -1.3 1,516,337 - somB Synpcc7942_1463 0.59 -1.6 1,516,367 - somB Synpcc7942_1463 0.61 -0.6 1,516,390 - somB Synpcc7942_1463 0.63 +1.1 1,516,394 + somB Synpcc7942_1463 0.63 +0.3 1,516,402 - somB Synpcc7942_1463 0.63 +1.5 1,516,406 + +2.5 1,516,406 + somB Synpcc7942_1463 0.64 -0.6 1,516,407 - somB Synpcc7942_1463 0.64 +0.6 1,516,422 - somB Synpcc7942_1463 0.65 +0.1 1,516,444 + somB Synpcc7942_1463 0.66 -0.4 1,516,444 + somB Synpcc7942_1463 0.66 -0.5 1,516,452 - somB Synpcc7942_1463 0.66 -0.2 1,516,452 - somB Synpcc7942_1463 0.66 +0.5 1,516,461 + somB Synpcc7942_1463 0.67 -0.8 1,516,466 + somB Synpcc7942_1463 0.67 +1.5 1,516,466 + somB Synpcc7942_1463 0.67 -2.9 1,516,466 + somB Synpcc7942_1463 0.67 +1.3 1,516,466 + somB Synpcc7942_1463 0.67 +1.1 1,516,466 + somB Synpcc7942_1463 0.67 -0.3 1,516,466 + somB Synpcc7942_1463 0.67 +1.7 1,516,474 - somB Synpcc7942_1463 0.68 -1.0 1,516,474 - somB Synpcc7942_1463 0.68 +1.1 1,516,474 - somB Synpcc7942_1463 0.68 +1.3 1,516,474 - somB Synpcc7942_1463 0.68 +0.5 1,516,474 - somB Synpcc7942_1463 0.68 +0.6 1,516,474 - somB Synpcc7942_1463 0.68 +0.9 1,516,474 - somB Synpcc7942_1463 0.68 -0.1 1,516,474 - somB Synpcc7942_1463 0.68 +0.7 1,516,474 - somB Synpcc7942_1463 0.68 -0.1 1,516,486 + somB Synpcc7942_1463 0.68 -4.6 1,516,516 + somB Synpcc7942_1463 0.70 +0.3 1,516,567 + somB Synpcc7942_1463 0.73 +1.3 1,516,572 + somB Synpcc7942_1463 0.74 +0.8 1,516,572 + somB Synpcc7942_1463 0.74 +0.5 1,516,572 + somB Synpcc7942_1463 0.74 +1.1 1,516,577 + somB Synpcc7942_1463 0.74 +0.5 1,516,580 - somB Synpcc7942_1463 0.74 -0.2 1,516,580 - somB Synpcc7942_1463 0.74 -0.1 1,516,601 - somB Synpcc7942_1463 0.75 +1.5 1,516,610 + somB Synpcc7942_1463 0.76 -1.1 1,516,622 + somB Synpcc7942_1463 0.77 -0.6 1,516,628 + somB Synpcc7942_1463 0.77 -0.1 1,516,628 + somB Synpcc7942_1463 0.77 -1.0 1,516,638 - somB Synpcc7942_1463 0.78 +0.3 1,516,648 - somB Synpcc7942_1463 0.78 -0.1 1,516,672 + somB Synpcc7942_1463 0.80 +0.8 1,516,690 + somB Synpcc7942_1463 0.81 +0.9 1,516,710 + somB Synpcc7942_1463 0.82 -0.3 1,516,710 + somB Synpcc7942_1463 0.82 +0.6 1,516,715 + somB Synpcc7942_1463 0.82 -0.5 1,516,715 + somB Synpcc7942_1463 0.82 -1.6 1,516,715 + somB Synpcc7942_1463 0.82 +1.8 1,516,723 - somB Synpcc7942_1463 0.83 -0.1 1,516,737 + somB Synpcc7942_1463 0.84 -1.1 1,516,745 + somB Synpcc7942_1463 0.84 -0.3 1,516,771 + somB Synpcc7942_1463 0.86 +0.7 1,516,779 - somB Synpcc7942_1463 0.86 +0.6 1,516,781 + somB Synpcc7942_1463 0.87 -1.6 1,516,781 + somB Synpcc7942_1463 0.87 +2.3 1,516,783 + somB Synpcc7942_1463 0.87 -1.1 1,516,791 + somB Synpcc7942_1463 0.87 -0.5 1,516,804 + somB Synpcc7942_1463 0.88 -1.1 1,516,821 + somB Synpcc7942_1463 0.89 +0.2 1,516,824 + somB Synpcc7942_1463 0.89 -0.3 1,516,824 + somB Synpcc7942_1463 0.89 +1.0 1,516,894 + -1.5 1,516,894 + -0.4 1,516,910 - -1.6 1,516,929 + +0.2 1,516,937 - +1.1 1,516,937 - +0.3 1,517,003 - +0.5 1,517,025 - +0.2 1,517,042 - +0.5 1,517,050 + -1.1 1,517,058 - -0.1 1,517,058 - -0.3 1,517,094 - +0.4 1,517,096 + +0.9 1,517,312 + -2.8 1,517,327 - -1.6 1,517,367 + -2.1 1,517,367 + +0.1 1,517,485 + somA Synpcc7942_1464 0.16 -2.4 1,517,488 - somA Synpcc7942_1464 0.16 -3.8 1,517,539 - somA Synpcc7942_1464 0.19 -2.1 1,517,632 - somA Synpcc7942_1464 0.25 +1.3 1,517,675 - somA Synpcc7942_1464 0.27 -4.2 1,517,687 + somA Synpcc7942_1464 0.28 -1.6 1,517,693 - somA Synpcc7942_1464 0.29 -2.7 1,517,711 - somA Synpcc7942_1464 0.30 +0.5 1,517,717 + somA Synpcc7942_1464 0.30 -1.6 1,517,781 + somA Synpcc7942_1464 0.34 -2.1 1,517,808 + somA Synpcc7942_1464 0.36 -0.8 1,517,816 - somA Synpcc7942_1464 0.36 -2.9 1,517,880 + somA Synpcc7942_1464 0.40 -1.2 1,517,969 + somA Synpcc7942_1464 0.46 -1.1 1,518,025 - somA Synpcc7942_1464 0.49 -0.1 1,518,053 + somA Synpcc7942_1464 0.51 -1.6 1,518,060 + somA Synpcc7942_1464 0.52 -0.1 1,518,110 + somA Synpcc7942_1464 0.55 -2.4 1,518,180 + somA Synpcc7942_1464 0.59 +0.3 1,518,268 - somA Synpcc7942_1464 0.65 +0.4 1,518,268 - somA Synpcc7942_1464 0.65 -1.2 1,518,274 - somA Synpcc7942_1464 0.65 -0.6 1,518,277 + somA Synpcc7942_1464 0.65 -2.5 1,518,281 - somA Synpcc7942_1464 0.65 -3.6 1,518,309 - somA Synpcc7942_1464 0.67 -0.5 1,518,364 + somA Synpcc7942_1464 0.71 -1.1 1,518,364 + somA Synpcc7942_1464 0.71 +1.5 1,518,364 + somA Synpcc7942_1464 0.71 -3.2 1,518,364 + somA Synpcc7942_1464 0.71 -4.0 1,518,364 + somA Synpcc7942_1464 0.71 -3.6 1,518,364 + somA Synpcc7942_1464 0.71 -0.3 1,518,364 + somA Synpcc7942_1464 0.71 +2.5 1,518,364 + somA Synpcc7942_1464 0.71 -3.5 1,518,372 - somA Synpcc7942_1464 0.71 -0.8 1,518,372 - somA Synpcc7942_1464 0.71 -1.6 1,518,372 - somA Synpcc7942_1464 0.71 -0.6 1,518,372 - somA Synpcc7942_1464 0.71 -2.0 1,518,474 - somA Synpcc7942_1464 0.78 -1.9 1,518,560 + somA Synpcc7942_1464 0.83 +0.9 1,518,560 + somA Synpcc7942_1464 0.83 -1.3 1,518,568 - somA Synpcc7942_1464 0.83 -1.8 1,518,568 - somA Synpcc7942_1464 0.83 -3.4 1,518,568 - somA Synpcc7942_1464 0.83 -4.4 1,518,854 - +0.5 1,518,891 + -0.4 1,518,992 - -2.0 1,519,002 - -1.9 1,519,143 + Synpcc7942_1465 0.33 -0.6 1,519,222 - Synpcc7942_1465 0.50 -1.2 1,519,256 + Synpcc7942_1465 0.57 -3.1 1,519,482 + -0.1 1,519,605 - -2.0 1,519,610 + -0.1 1,519,617 + -0.1 1,519,681 + +2.7 1,519,689 - +0.5 1,519,689 - -2.8 1,519,696 + -0.6 1,519,698 + -0.3 1,519,711 - -1.6 1,519,711 - +0.2 1,519,725 + +0.1 1,519,733 - -0.3 1,519,756 - -0.3 1,519,756 - -1.8 1,519,757 - +0.9 1,519,759 + -2.1
Or see this region's nucleotide sequence