Experiment: D-Cycloserine 0.015625 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Synpcc7942_1299 and Synpcc7942_1300 are separated by 238 nucleotides Synpcc7942_1300 and recQ are separated by 15 nucleotides
Synpcc7942_1299: Synpcc7942_1299 - hypothetical protein, at 1,326,892 to 1,327,854
_1299
Synpcc7942_1300: Synpcc7942_1300 - hypothetical protein, at 1,328,093 to 1,328,662
_1300
Synpcc7942_1301: recQ - ATP-dependent DNA helicase RecQ, at 1,328,678 to 1,330,141
recQ
Position (kb) 1328
1329 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3 at 1327.105 kb on + strand, within Synpcc7942_1299 at 1327.122 kb on + strand, within Synpcc7942_1299 at 1327.122 kb on + strand, within Synpcc7942_1299 at 1327.130 kb on - strand, within Synpcc7942_1299 at 1327.130 kb on - strand, within Synpcc7942_1299 at 1327.130 kb on - strand, within Synpcc7942_1299 at 1327.130 kb on - strand, within Synpcc7942_1299 at 1327.147 kb on + strand, within Synpcc7942_1299 at 1327.147 kb on + strand, within Synpcc7942_1299 at 1327.147 kb on + strand, within Synpcc7942_1299 at 1327.155 kb on - strand, within Synpcc7942_1299 at 1327.260 kb on + strand, within Synpcc7942_1299 at 1327.283 kb on + strand, within Synpcc7942_1299 at 1327.325 kb on + strand, within Synpcc7942_1299 at 1327.325 kb on + strand, within Synpcc7942_1299 at 1327.362 kb on - strand, within Synpcc7942_1299 at 1327.407 kb on + strand, within Synpcc7942_1299 at 1327.412 kb on + strand, within Synpcc7942_1299 at 1327.447 kb on + strand, within Synpcc7942_1299 at 1327.455 kb on - strand, within Synpcc7942_1299 at 1327.466 kb on + strand, within Synpcc7942_1299 at 1327.466 kb on + strand, within Synpcc7942_1299 at 1327.474 kb on - strand, within Synpcc7942_1299 at 1327.474 kb on - strand, within Synpcc7942_1299 at 1327.474 kb on - strand, within Synpcc7942_1299 at 1327.474 kb on - strand, within Synpcc7942_1299 at 1327.491 kb on + strand, within Synpcc7942_1299 at 1327.497 kb on - strand, within Synpcc7942_1299 at 1327.501 kb on + strand, within Synpcc7942_1299 at 1327.501 kb on - strand, within Synpcc7942_1299 at 1327.501 kb on - strand, within Synpcc7942_1299 at 1327.501 kb on - strand, within Synpcc7942_1299 at 1327.509 kb on - strand, within Synpcc7942_1299 at 1327.511 kb on - strand, within Synpcc7942_1299 at 1327.543 kb on + strand, within Synpcc7942_1299 at 1327.591 kb on + strand, within Synpcc7942_1299 at 1327.599 kb on - strand, within Synpcc7942_1299 at 1327.601 kb on + strand, within Synpcc7942_1299 at 1327.682 kb on - strand, within Synpcc7942_1299 at 1327.684 kb on + strand, within Synpcc7942_1299 at 1327.692 kb on - strand, within Synpcc7942_1299 at 1327.826 kb on + strand at 1327.834 kb on - strand at 1327.834 kb on - strand at 1327.842 kb on - strand at 1327.844 kb on + strand at 1328.006 kb on + strand at 1328.006 kb on + strand at 1328.014 kb on - strand at 1328.016 kb on + strand at 1328.086 kb on + strand at 1328.094 kb on - strand at 1328.102 kb on + strand at 1328.224 kb on + strand, within Synpcc7942_1300 at 1328.232 kb on - strand, within Synpcc7942_1300 at 1328.265 kb on + strand, within Synpcc7942_1300 at 1328.310 kb on + strand, within Synpcc7942_1300 at 1328.346 kb on - strand, within Synpcc7942_1300 at 1328.413 kb on + strand, within Synpcc7942_1300 at 1328.415 kb on + strand, within Synpcc7942_1300 at 1328.415 kb on + strand, within Synpcc7942_1300 at 1328.415 kb on + strand, within Synpcc7942_1300 at 1328.415 kb on + strand, within Synpcc7942_1300 at 1328.423 kb on - strand, within Synpcc7942_1300 at 1328.478 kb on - strand, within Synpcc7942_1300 at 1328.518 kb on + strand, within Synpcc7942_1300 at 1328.563 kb on + strand, within Synpcc7942_1300 at 1328.563 kb on + strand, within Synpcc7942_1300 at 1328.563 kb on + strand, within Synpcc7942_1300 at 1328.571 kb on - strand, within Synpcc7942_1300 at 1328.571 kb on - strand, within Synpcc7942_1300 at 1328.581 kb on - strand, within Synpcc7942_1300 at 1328.588 kb on + strand, within Synpcc7942_1300 at 1328.626 kb on + strand at 1328.651 kb on - strand at 1328.671 kb on - strand at 1328.671 kb on - strand at 1328.673 kb on + strand at 1328.678 kb on - strand at 1328.683 kb on - strand at 1328.683 kb on - strand at 1328.693 kb on + strand at 1328.699 kb on - strand at 1328.731 kb on - strand at 1328.745 kb on + strand at 1328.764 kb on + strand at 1328.764 kb on + strand at 1328.764 kb on + strand at 1328.765 kb on + strand at 1328.772 kb on - strand at 1328.772 kb on - strand at 1328.781 kb on + strand at 1328.792 kb on + strand at 1328.797 kb on + strand at 1328.804 kb on + strand at 1328.805 kb on - strand at 1328.825 kb on + strand, within recQ at 1328.827 kb on - strand at 1328.874 kb on + strand, within recQ at 1328.874 kb on + strand, within recQ at 1328.882 kb on - strand, within recQ at 1328.882 kb on - strand, within recQ at 1328.896 kb on - strand, within recQ at 1328.903 kb on + strand, within recQ at 1328.911 kb on - strand, within recQ at 1328.965 kb on - strand, within recQ at 1329.008 kb on - strand, within recQ at 1329.029 kb on + strand, within recQ at 1329.055 kb on + strand, within recQ at 1329.063 kb on - strand, within recQ at 1329.063 kb on - strand, within recQ at 1329.063 kb on - strand, within recQ at 1329.063 kb on - strand, within recQ at 1329.068 kb on + strand, within recQ at 1329.074 kb on + strand, within recQ at 1329.101 kb on + strand, within recQ at 1329.148 kb on + strand, within recQ at 1329.149 kb on + strand, within recQ at 1329.158 kb on + strand, within recQ at 1329.158 kb on + strand, within recQ at 1329.161 kb on + strand, within recQ at 1329.166 kb on - strand, within recQ at 1329.218 kb on + strand, within recQ at 1329.218 kb on + strand, within recQ at 1329.218 kb on + strand, within recQ at 1329.226 kb on - strand, within recQ at 1329.240 kb on - strand, within recQ at 1329.264 kb on - strand, within recQ at 1329.285 kb on - strand, within recQ at 1329.294 kb on - strand, within recQ at 1329.308 kb on - strand, within recQ at 1329.352 kb on - strand, within recQ at 1329.360 kb on - strand, within recQ at 1329.386 kb on - strand at 1329.390 kb on - strand, within recQ at 1329.399 kb on + strand, within recQ at 1329.406 kb on - strand, within recQ at 1329.418 kb on - strand, within recQ at 1329.445 kb on - strand, within recQ at 1329.445 kb on - strand, within recQ at 1329.446 kb on + strand, within recQ at 1329.446 kb on + strand, within recQ at 1329.454 kb on - strand, within recQ at 1329.481 kb on + strand, within recQ at 1329.481 kb on + strand, within recQ at 1329.481 kb on + strand, within recQ at 1329.482 kb on - strand, within recQ at 1329.545 kb on - strand, within recQ at 1329.587 kb on + strand, within recQ at 1329.602 kb on + strand at 1329.602 kb on + strand, within recQ at 1329.602 kb on - strand, within recQ at 1329.604 kb on + strand, within recQ at 1329.604 kb on + strand, within recQ at 1329.612 kb on - strand, within recQ at 1329.612 kb on - strand, within recQ at 1329.612 kb on - strand, within recQ at 1329.614 kb on + strand, within recQ at 1329.632 kb on + strand, within recQ at 1329.634 kb on - strand, within recQ at 1329.651 kb on + strand, within recQ
Per-strain Table
Position Strand Gene LocusTag Fraction D-Cycloserine 0.015625 mg/ml remove 1,327,105 + Synpcc7942_1299 0.22 -0.3 1,327,122 + Synpcc7942_1299 0.24 +1.3 1,327,122 + Synpcc7942_1299 0.24 -2.7 1,327,130 - Synpcc7942_1299 0.25 -1.2 1,327,130 - Synpcc7942_1299 0.25 -3.4 1,327,130 - Synpcc7942_1299 0.25 +0.7 1,327,130 - Synpcc7942_1299 0.25 -0.4 1,327,147 + Synpcc7942_1299 0.26 +0.4 1,327,147 + Synpcc7942_1299 0.26 +0.4 1,327,147 + Synpcc7942_1299 0.26 +0.9 1,327,155 - Synpcc7942_1299 0.27 +1.3 1,327,260 + Synpcc7942_1299 0.38 +0.9 1,327,283 + Synpcc7942_1299 0.41 +0.1 1,327,325 + Synpcc7942_1299 0.45 +1.3 1,327,325 + Synpcc7942_1299 0.45 -0.1 1,327,362 - Synpcc7942_1299 0.49 +0.9 1,327,407 + Synpcc7942_1299 0.53 +0.1 1,327,412 + Synpcc7942_1299 0.54 +0.9 1,327,447 + Synpcc7942_1299 0.58 +2.9 1,327,455 - Synpcc7942_1299 0.58 -0.3 1,327,466 + Synpcc7942_1299 0.60 +0.5 1,327,466 + Synpcc7942_1299 0.60 +0.5 1,327,474 - Synpcc7942_1299 0.60 -0.0 1,327,474 - Synpcc7942_1299 0.60 -0.1 1,327,474 - Synpcc7942_1299 0.60 -0.7 1,327,474 - Synpcc7942_1299 0.60 -1.1 1,327,491 + Synpcc7942_1299 0.62 +0.5 1,327,497 - Synpcc7942_1299 0.63 -0.3 1,327,501 + Synpcc7942_1299 0.63 +0.7 1,327,501 - Synpcc7942_1299 0.63 +1.4 1,327,501 - Synpcc7942_1299 0.63 -1.7 1,327,501 - Synpcc7942_1299 0.63 -0.7 1,327,509 - Synpcc7942_1299 0.64 -1.5 1,327,511 - Synpcc7942_1299 0.64 +0.1 1,327,543 + Synpcc7942_1299 0.68 -0.5 1,327,591 + Synpcc7942_1299 0.73 +2.5 1,327,599 - Synpcc7942_1299 0.73 +0.8 1,327,601 + Synpcc7942_1299 0.74 -1.1 1,327,682 - Synpcc7942_1299 0.82 +0.7 1,327,684 + Synpcc7942_1299 0.82 -0.1 1,327,692 - Synpcc7942_1299 0.83 +3.1 1,327,826 + -0.7 1,327,834 - -1.7 1,327,834 - +0.7 1,327,842 - +2.7 1,327,844 + +0.4 1,328,006 + +0.9 1,328,006 + -0.7 1,328,014 - +1.5 1,328,016 + +0.5 1,328,086 + -1.0 1,328,094 - -0.5 1,328,102 + -0.6 1,328,224 + Synpcc7942_1300 0.23 -0.7 1,328,232 - Synpcc7942_1300 0.24 -2.2 1,328,265 + Synpcc7942_1300 0.30 -2.9 1,328,310 + Synpcc7942_1300 0.38 -1.5 1,328,346 - Synpcc7942_1300 0.44 -2.4 1,328,413 + Synpcc7942_1300 0.56 -0.1 1,328,415 + Synpcc7942_1300 0.56 -0.9 1,328,415 + Synpcc7942_1300 0.56 -3.0 1,328,415 + Synpcc7942_1300 0.56 -0.7 1,328,415 + Synpcc7942_1300 0.56 -2.4 1,328,423 - Synpcc7942_1300 0.58 -2.4 1,328,478 - Synpcc7942_1300 0.68 -0.9 1,328,518 + Synpcc7942_1300 0.75 -0.3 1,328,563 + Synpcc7942_1300 0.82 -1.5 1,328,563 + Synpcc7942_1300 0.82 -1.3 1,328,563 + Synpcc7942_1300 0.82 -2.1 1,328,571 - Synpcc7942_1300 0.84 -1.3 1,328,571 - Synpcc7942_1300 0.84 -3.8 1,328,581 - Synpcc7942_1300 0.86 -0.8 1,328,588 + Synpcc7942_1300 0.87 -2.9 1,328,626 + -1.7 1,328,651 - -1.0 1,328,671 - +0.2 1,328,671 - +0.3 1,328,673 + +0.3 1,328,678 - +1.2 1,328,683 - -0.4 1,328,683 - +0.8 1,328,693 + +1.5 1,328,699 - -1.1 1,328,731 - +0.6 1,328,745 + +0.1 1,328,764 + -0.7 1,328,764 + +1.9 1,328,764 + +0.3 1,328,765 + +1.3 1,328,772 - -2.2 1,328,772 - -0.2 1,328,781 + +1.4 1,328,792 + -0.1 1,328,797 + +0.1 1,328,804 + -1.4 1,328,805 - +0.0 1,328,825 + recQ Synpcc7942_1301 0.10 -1.5 1,328,827 - -1.1 1,328,874 + recQ Synpcc7942_1301 0.13 -0.4 1,328,874 + recQ Synpcc7942_1301 0.13 -0.6 1,328,882 - recQ Synpcc7942_1301 0.14 -1.4 1,328,882 - recQ Synpcc7942_1301 0.14 +0.6 1,328,896 - recQ Synpcc7942_1301 0.15 +0.5 1,328,903 + recQ Synpcc7942_1301 0.15 -0.4 1,328,911 - recQ Synpcc7942_1301 0.16 +0.2 1,328,965 - recQ Synpcc7942_1301 0.20 -0.1 1,329,008 - recQ Synpcc7942_1301 0.23 +1.5 1,329,029 + recQ Synpcc7942_1301 0.24 +0.9 1,329,055 + recQ Synpcc7942_1301 0.26 -0.2 1,329,063 - recQ Synpcc7942_1301 0.26 +1.3 1,329,063 - recQ Synpcc7942_1301 0.26 -0.8 1,329,063 - recQ Synpcc7942_1301 0.26 -1.7 1,329,063 - recQ Synpcc7942_1301 0.26 +0.2 1,329,068 + recQ Synpcc7942_1301 0.27 +0.7 1,329,074 + recQ Synpcc7942_1301 0.27 +0.6 1,329,101 + recQ Synpcc7942_1301 0.29 -0.7 1,329,148 + recQ Synpcc7942_1301 0.32 +1.7 1,329,149 + recQ Synpcc7942_1301 0.32 +0.0 1,329,158 + recQ Synpcc7942_1301 0.33 +0.9 1,329,158 + recQ Synpcc7942_1301 0.33 +0.4 1,329,161 + recQ Synpcc7942_1301 0.33 -0.1 1,329,166 - recQ Synpcc7942_1301 0.33 +1.2 1,329,218 + recQ Synpcc7942_1301 0.37 -1.1 1,329,218 + recQ Synpcc7942_1301 0.37 -2.2 1,329,218 + recQ Synpcc7942_1301 0.37 +0.1 1,329,226 - recQ Synpcc7942_1301 0.37 +1.1 1,329,240 - recQ Synpcc7942_1301 0.38 +0.9 1,329,264 - recQ Synpcc7942_1301 0.40 -0.2 1,329,285 - recQ Synpcc7942_1301 0.41 -0.3 1,329,294 - recQ Synpcc7942_1301 0.42 +0.8 1,329,308 - recQ Synpcc7942_1301 0.43 +0.7 1,329,352 - recQ Synpcc7942_1301 0.46 +1.5 1,329,360 - recQ Synpcc7942_1301 0.47 +0.3 1,329,386 - -1.1 1,329,390 - recQ Synpcc7942_1301 0.49 +0.5 1,329,399 + recQ Synpcc7942_1301 0.49 +1.3 1,329,406 - recQ Synpcc7942_1301 0.50 -0.1 1,329,418 - recQ Synpcc7942_1301 0.51 +0.9 1,329,445 - recQ Synpcc7942_1301 0.52 -0.4 1,329,445 - recQ Synpcc7942_1301 0.52 -1.7 1,329,446 + recQ Synpcc7942_1301 0.52 +0.6 1,329,446 + recQ Synpcc7942_1301 0.52 +0.3 1,329,454 - recQ Synpcc7942_1301 0.53 +2.3 1,329,481 + recQ Synpcc7942_1301 0.55 +0.4 1,329,481 + recQ Synpcc7942_1301 0.55 -1.7 1,329,481 + recQ Synpcc7942_1301 0.55 +0.4 1,329,482 - recQ Synpcc7942_1301 0.55 -1.1 1,329,545 - recQ Synpcc7942_1301 0.59 +0.0 1,329,587 + recQ Synpcc7942_1301 0.62 -0.4 1,329,602 + +0.9 1,329,602 + recQ Synpcc7942_1301 0.63 +0.2 1,329,602 - recQ Synpcc7942_1301 0.63 +0.1 1,329,604 + recQ Synpcc7942_1301 0.63 +0.7 1,329,604 + recQ Synpcc7942_1301 0.63 +0.3 1,329,612 - recQ Synpcc7942_1301 0.64 -0.3 1,329,612 - recQ Synpcc7942_1301 0.64 -0.1 1,329,612 - recQ Synpcc7942_1301 0.64 +0.7 1,329,614 + recQ Synpcc7942_1301 0.64 -0.4 1,329,632 + recQ Synpcc7942_1301 0.65 -0.8 1,329,634 - recQ Synpcc7942_1301 0.65 -0.3 1,329,651 + recQ Synpcc7942_1301 0.66 -2.7
Or see this region's nucleotide sequence