Experiment: D-Cycloserine 0.015625 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt nirB and ntcB overlap by 10 nucleotides ntcB and Synpcc7942_1243 are separated by 364 nucleotides
Synpcc7942_1241: nirB - nitrite reductase related protein, at 1,265,088 to 1,266,137
nirB
Synpcc7942_1242: ntcB - transcriptional regulator, LysR family, at 1,266,128 to 1,267,057
ntcB
Synpcc7942_1243: Synpcc7942_1243 - cyclic nucleotide-binding domain (cNMP-BD) protein, at 1,267,422 to 1,268,117
_1243
Position (kb)
1266
1267
1268 Strain fitness (log2 ratio)
-4
-3
-2
-1
0
1
2
3 at 1265.157 kb on + strand at 1265.215 kb on + strand, within nirB at 1265.434 kb on - strand, within nirB at 1265.508 kb on + strand, within nirB at 1265.612 kb on - strand, within nirB at 1265.629 kb on - strand, within nirB at 1265.710 kb on - strand, within nirB at 1265.710 kb on - strand, within nirB at 1265.720 kb on - strand, within nirB at 1265.828 kb on - strand, within nirB at 1266.002 kb on + strand, within nirB at 1266.007 kb on + strand, within nirB at 1266.054 kb on + strand at 1266.056 kb on + strand at 1266.062 kb on - strand at 1266.064 kb on - strand at 1266.104 kb on + strand at 1266.104 kb on + strand at 1266.111 kb on - strand at 1266.111 kb on - strand at 1266.132 kb on + strand at 1266.142 kb on + strand at 1266.150 kb on - strand at 1266.191 kb on + strand at 1266.232 kb on + strand, within ntcB at 1266.232 kb on + strand, within ntcB at 1266.239 kb on + strand, within ntcB at 1266.247 kb on - strand, within ntcB at 1266.261 kb on - strand, within ntcB at 1266.263 kb on + strand, within ntcB at 1266.276 kb on - strand, within ntcB at 1266.354 kb on - strand, within ntcB at 1266.482 kb on + strand, within ntcB at 1266.503 kb on - strand, within ntcB at 1266.632 kb on + strand, within ntcB at 1266.650 kb on - strand, within ntcB at 1266.677 kb on - strand, within ntcB at 1266.686 kb on - strand, within ntcB at 1266.739 kb on - strand, within ntcB at 1266.768 kb on + strand, within ntcB at 1266.776 kb on - strand, within ntcB at 1266.808 kb on - strand, within ntcB at 1266.840 kb on + strand, within ntcB at 1266.862 kb on - strand, within ntcB at 1266.892 kb on - strand, within ntcB at 1266.909 kb on + strand, within ntcB at 1266.909 kb on + strand, within ntcB at 1266.912 kb on - strand, within ntcB at 1266.917 kb on - strand, within ntcB at 1266.938 kb on + strand, within ntcB at 1266.948 kb on + strand, within ntcB at 1266.948 kb on + strand, within ntcB at 1266.994 kb on + strand at 1267.051 kb on + strand at 1267.051 kb on + strand at 1267.051 kb on + strand at 1267.051 kb on + strand at 1267.051 kb on + strand at 1267.051 kb on + strand at 1267.051 kb on + strand at 1267.059 kb on - strand at 1267.059 kb on - strand at 1267.059 kb on - strand at 1267.059 kb on - strand at 1267.059 kb on - strand at 1267.059 kb on - strand at 1267.059 kb on - strand at 1267.059 kb on - strand at 1267.059 kb on - strand at 1267.070 kb on - strand at 1267.079 kb on - strand at 1267.106 kb on + strand at 1267.143 kb on + strand at 1267.143 kb on + strand at 1267.143 kb on + strand at 1267.143 kb on + strand at 1267.143 kb on + strand at 1267.151 kb on - strand at 1267.151 kb on - strand at 1267.151 kb on - strand at 1267.151 kb on - strand at 1267.153 kb on + strand at 1267.178 kb on + strand at 1267.183 kb on - strand at 1267.186 kb on - strand at 1267.186 kb on - strand at 1267.188 kb on - strand at 1267.211 kb on + strand at 1267.219 kb on - strand at 1267.223 kb on - strand at 1267.226 kb on - strand at 1267.228 kb on + strand at 1267.228 kb on + strand at 1267.244 kb on + strand at 1267.254 kb on + strand at 1267.279 kb on - strand at 1267.286 kb on + strand at 1267.289 kb on - strand at 1267.305 kb on + strand at 1267.306 kb on + strand at 1267.306 kb on + strand at 1267.306 kb on + strand at 1267.306 kb on + strand at 1267.306 kb on + strand at 1267.306 kb on + strand at 1267.311 kb on + strand at 1267.314 kb on - strand at 1267.314 kb on - strand at 1267.314 kb on - strand at 1267.314 kb on - strand at 1267.329 kb on + strand at 1267.329 kb on + strand at 1267.329 kb on + strand at 1267.329 kb on + strand at 1267.337 kb on - strand at 1267.337 kb on - strand at 1267.337 kb on - strand at 1267.342 kb on - strand at 1267.344 kb on - strand at 1267.347 kb on + strand at 1267.377 kb on - strand at 1267.382 kb on - strand at 1267.382 kb on - strand at 1267.445 kb on + strand at 1267.453 kb on - strand at 1267.453 kb on - strand at 1267.453 kb on - strand at 1267.453 kb on - strand at 1267.463 kb on - strand at 1267.466 kb on + strand at 1267.469 kb on - strand at 1267.484 kb on + strand at 1267.484 kb on + strand at 1267.514 kb on + strand, within Synpcc7942_1243 at 1267.514 kb on + strand, within Synpcc7942_1243 at 1267.514 kb on + strand at 1267.522 kb on - strand, within Synpcc7942_1243 at 1267.522 kb on - strand, within Synpcc7942_1243 at 1267.522 kb on - strand at 1267.534 kb on + strand, within Synpcc7942_1243 at 1267.566 kb on + strand, within Synpcc7942_1243 at 1267.571 kb on + strand, within Synpcc7942_1243 at 1267.574 kb on - strand, within Synpcc7942_1243 at 1267.582 kb on + strand, within Synpcc7942_1243 at 1267.587 kb on + strand, within Synpcc7942_1243 at 1267.618 kb on + strand, within Synpcc7942_1243 at 1267.641 kb on + strand, within Synpcc7942_1243 at 1267.650 kb on + strand, within Synpcc7942_1243 at 1267.651 kb on + strand, within Synpcc7942_1243 at 1267.664 kb on - strand, within Synpcc7942_1243 at 1267.664 kb on - strand, within Synpcc7942_1243 at 1267.675 kb on + strand, within Synpcc7942_1243 at 1267.689 kb on + strand, within Synpcc7942_1243 at 1267.721 kb on - strand, within Synpcc7942_1243 at 1267.742 kb on - strand, within Synpcc7942_1243 at 1267.742 kb on - strand, within Synpcc7942_1243 at 1267.742 kb on - strand, within Synpcc7942_1243 at 1267.742 kb on - strand, within Synpcc7942_1243 at 1267.747 kb on - strand at 1267.763 kb on + strand, within Synpcc7942_1243 at 1267.776 kb on + strand, within Synpcc7942_1243 at 1267.777 kb on + strand, within Synpcc7942_1243 at 1267.778 kb on - strand, within Synpcc7942_1243 at 1267.778 kb on - strand, within Synpcc7942_1243 at 1267.782 kb on + strand, within Synpcc7942_1243 at 1267.782 kb on + strand, within Synpcc7942_1243 at 1267.812 kb on + strand, within Synpcc7942_1243 at 1267.827 kb on - strand, within Synpcc7942_1243 at 1267.827 kb on - strand, within Synpcc7942_1243 at 1267.881 kb on + strand, within Synpcc7942_1243 at 1267.881 kb on - strand, within Synpcc7942_1243 at 1267.886 kb on + strand, within Synpcc7942_1243 at 1267.886 kb on + strand, within Synpcc7942_1243 at 1267.886 kb on + strand, within Synpcc7942_1243 at 1267.893 kb on + strand, within Synpcc7942_1243 at 1267.894 kb on - strand, within Synpcc7942_1243 at 1267.899 kb on - strand, within Synpcc7942_1243 at 1267.901 kb on + strand, within Synpcc7942_1243 at 1267.937 kb on - strand, within Synpcc7942_1243 at 1267.952 kb on + strand, within Synpcc7942_1243 at 1267.960 kb on - strand, within Synpcc7942_1243 at 1267.975 kb on + strand, within Synpcc7942_1243 at 1267.989 kb on - strand, within Synpcc7942_1243 at 1268.014 kb on + strand, within Synpcc7942_1243 at 1268.017 kb on + strand, within Synpcc7942_1243 at 1268.017 kb on + strand, within Synpcc7942_1243 at 1268.020 kb on - strand at 1268.022 kb on - strand, within Synpcc7942_1243 at 1268.025 kb on - strand, within Synpcc7942_1243 at 1268.027 kb on - strand, within Synpcc7942_1243 at 1268.037 kb on + strand, within Synpcc7942_1243 at 1268.037 kb on + strand, within Synpcc7942_1243 at 1268.040 kb on - strand, within Synpcc7942_1243 at 1268.045 kb on - strand, within Synpcc7942_1243 at 1268.045 kb on - strand, within Synpcc7942_1243 at 1268.046 kb on - strand, within Synpcc7942_1243 at 1268.056 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction D-Cycloserine 0.015625 mg/ml remove 1,265,157 + -2.1 1,265,215 + nirB Synpcc7942_1241 0.12 -0.7 1,265,434 - nirB Synpcc7942_1241 0.33 -0.1 1,265,508 + nirB Synpcc7942_1241 0.40 -2.4 1,265,612 - nirB Synpcc7942_1241 0.50 -0.1 1,265,629 - nirB Synpcc7942_1241 0.52 -2.7 1,265,710 - nirB Synpcc7942_1241 0.59 -2.8 1,265,710 - nirB Synpcc7942_1241 0.59 -0.6 1,265,720 - nirB Synpcc7942_1241 0.60 -2.4 1,265,828 - nirB Synpcc7942_1241 0.70 -3.2 1,266,002 + nirB Synpcc7942_1241 0.87 -2.1 1,266,007 + nirB Synpcc7942_1241 0.88 -0.1 1,266,054 + -1.1 1,266,056 + +0.2 1,266,062 - +0.9 1,266,064 - -0.9 1,266,104 + +0.7 1,266,104 + +1.2 1,266,111 - +0.9 1,266,111 - -3.4 1,266,132 + -0.8 1,266,142 + -3.3 1,266,150 - -1.2 1,266,191 + -0.3 1,266,232 + ntcB Synpcc7942_1242 0.11 -1.1 1,266,232 + ntcB Synpcc7942_1242 0.11 -2.1 1,266,239 + ntcB Synpcc7942_1242 0.12 -2.7 1,266,247 - ntcB Synpcc7942_1242 0.13 -1.9 1,266,261 - ntcB Synpcc7942_1242 0.14 -4.1 1,266,263 + ntcB Synpcc7942_1242 0.15 -2.4 1,266,276 - ntcB Synpcc7942_1242 0.16 -1.7 1,266,354 - ntcB Synpcc7942_1242 0.24 -1.7 1,266,482 + ntcB Synpcc7942_1242 0.38 -1.5 1,266,503 - ntcB Synpcc7942_1242 0.40 -0.4 1,266,632 + ntcB Synpcc7942_1242 0.54 -2.1 1,266,650 - ntcB Synpcc7942_1242 0.56 -1.2 1,266,677 - ntcB Synpcc7942_1242 0.59 -0.1 1,266,686 - ntcB Synpcc7942_1242 0.60 -1.1 1,266,739 - ntcB Synpcc7942_1242 0.66 -0.9 1,266,768 + ntcB Synpcc7942_1242 0.69 -0.5 1,266,776 - ntcB Synpcc7942_1242 0.70 -2.8 1,266,808 - ntcB Synpcc7942_1242 0.73 -2.5 1,266,840 + ntcB Synpcc7942_1242 0.77 -1.1 1,266,862 - ntcB Synpcc7942_1242 0.79 -2.4 1,266,892 - ntcB Synpcc7942_1242 0.82 -1.7 1,266,909 + ntcB Synpcc7942_1242 0.84 +1.4 1,266,909 + ntcB Synpcc7942_1242 0.84 +0.9 1,266,912 - ntcB Synpcc7942_1242 0.84 -2.4 1,266,917 - ntcB Synpcc7942_1242 0.85 -1.5 1,266,938 + ntcB Synpcc7942_1242 0.87 -0.4 1,266,948 + ntcB Synpcc7942_1242 0.88 -3.1 1,266,948 + ntcB Synpcc7942_1242 0.88 -0.7 1,266,994 + -0.1 1,267,051 + +0.2 1,267,051 + +0.9 1,267,051 + +0.1 1,267,051 + -0.8 1,267,051 + +0.3 1,267,051 + +0.9 1,267,051 + -2.7 1,267,059 - +1.4 1,267,059 - +0.4 1,267,059 - -0.1 1,267,059 - -2.1 1,267,059 - +0.9 1,267,059 - +0.9 1,267,059 - +0.2 1,267,059 - -0.8 1,267,059 - -0.1 1,267,070 - -0.5 1,267,079 - -1.1 1,267,106 + -1.7 1,267,143 + -1.9 1,267,143 + +0.9 1,267,143 + +0.0 1,267,143 + -2.7 1,267,143 + +1.4 1,267,151 - +1.5 1,267,151 - -0.2 1,267,151 - +0.3 1,267,151 - +1.2 1,267,153 + +1.2 1,267,178 + +2.0 1,267,183 - +0.5 1,267,186 - +1.9 1,267,186 - -0.4 1,267,188 - +0.4 1,267,211 + -0.5 1,267,219 - +0.8 1,267,223 - +0.7 1,267,226 - +0.2 1,267,228 + +1.7 1,267,228 + -1.1 1,267,244 + -2.4 1,267,254 + -0.1 1,267,279 - +0.2 1,267,286 + -0.4 1,267,289 - +1.5 1,267,305 + -0.1 1,267,306 + +0.9 1,267,306 + -0.3 1,267,306 + +1.2 1,267,306 + +0.2 1,267,306 + -1.2 1,267,306 + -0.4 1,267,311 + +0.6 1,267,314 - -0.3 1,267,314 - +0.1 1,267,314 - +1.9 1,267,314 - -0.3 1,267,329 + -0.6 1,267,329 + +0.9 1,267,329 + -1.4 1,267,329 + -0.3 1,267,337 - -2.7 1,267,337 - -0.1 1,267,337 - +2.9 1,267,342 - +0.9 1,267,344 - +0.8 1,267,347 + +0.9 1,267,377 - +0.5 1,267,382 - -0.5 1,267,382 - +0.4 1,267,445 + -0.4 1,267,453 - +0.5 1,267,453 - +0.9 1,267,453 - +0.3 1,267,453 - -0.6 1,267,463 - -0.7 1,267,466 + +0.6 1,267,469 - -1.7 1,267,484 + +0.9 1,267,484 + -0.2 1,267,514 + Synpcc7942_1243 0.13 +0.1 1,267,514 + Synpcc7942_1243 0.13 -0.3 1,267,514 + +1.9 1,267,522 - Synpcc7942_1243 0.14 +0.9 1,267,522 - Synpcc7942_1243 0.14 -0.7 1,267,522 - +0.9 1,267,534 + Synpcc7942_1243 0.16 -1.8 1,267,566 + Synpcc7942_1243 0.21 +1.9 1,267,571 + Synpcc7942_1243 0.21 -0.6 1,267,574 - Synpcc7942_1243 0.22 -0.9 1,267,582 + Synpcc7942_1243 0.23 -0.1 1,267,587 + Synpcc7942_1243 0.24 -1.5 1,267,618 + Synpcc7942_1243 0.28 +2.2 1,267,641 + Synpcc7942_1243 0.31 -0.1 1,267,650 + Synpcc7942_1243 0.33 +1.5 1,267,651 + Synpcc7942_1243 0.33 -1.5 1,267,664 - Synpcc7942_1243 0.35 -0.3 1,267,664 - Synpcc7942_1243 0.35 +1.5 1,267,675 + Synpcc7942_1243 0.36 -0.1 1,267,689 + Synpcc7942_1243 0.38 +2.7 1,267,721 - Synpcc7942_1243 0.43 -0.4 1,267,742 - Synpcc7942_1243 0.46 +0.9 1,267,742 - Synpcc7942_1243 0.46 -0.7 1,267,742 - Synpcc7942_1243 0.46 +0.9 1,267,742 - Synpcc7942_1243 0.46 +1.1 1,267,747 - -0.1 1,267,763 + Synpcc7942_1243 0.49 -0.3 1,267,776 + Synpcc7942_1243 0.51 -1.3 1,267,777 + Synpcc7942_1243 0.51 -0.6 1,267,778 - Synpcc7942_1243 0.51 +0.2 1,267,778 - Synpcc7942_1243 0.51 +0.3 1,267,782 + Synpcc7942_1243 0.52 +2.5 1,267,782 + Synpcc7942_1243 0.52 +1.9 1,267,812 + Synpcc7942_1243 0.56 -1.2 1,267,827 - Synpcc7942_1243 0.58 -0.7 1,267,827 - Synpcc7942_1243 0.58 +0.9 1,267,881 + Synpcc7942_1243 0.66 +1.9 1,267,881 - Synpcc7942_1243 0.66 -2.4 1,267,886 + Synpcc7942_1243 0.67 -0.1 1,267,886 + Synpcc7942_1243 0.67 -0.4 1,267,886 + Synpcc7942_1243 0.67 +0.5 1,267,893 + Synpcc7942_1243 0.68 -0.5 1,267,894 - Synpcc7942_1243 0.68 +0.1 1,267,899 - Synpcc7942_1243 0.69 +0.7 1,267,901 + Synpcc7942_1243 0.69 -0.1 1,267,937 - Synpcc7942_1243 0.74 +0.2 1,267,952 + Synpcc7942_1243 0.76 -0.1 1,267,960 - Synpcc7942_1243 0.77 +0.7 1,267,975 + Synpcc7942_1243 0.79 -0.3 1,267,989 - Synpcc7942_1243 0.81 +0.3 1,268,014 + Synpcc7942_1243 0.85 +2.2 1,268,017 + Synpcc7942_1243 0.85 -0.2 1,268,017 + Synpcc7942_1243 0.85 -0.9 1,268,020 - +2.2 1,268,022 - Synpcc7942_1243 0.86 -0.3 1,268,025 - Synpcc7942_1243 0.87 +0.6 1,268,027 - Synpcc7942_1243 0.87 -0.8 1,268,037 + Synpcc7942_1243 0.88 -0.7 1,268,037 + Synpcc7942_1243 0.88 -0.3 1,268,040 - Synpcc7942_1243 0.89 -0.1 1,268,045 - Synpcc7942_1243 0.90 -0.6 1,268,045 - Synpcc7942_1243 0.90 +0.2 1,268,046 - Synpcc7942_1243 0.90 -0.3 1,268,056 - -0.1
Or see this region's nucleotide sequence