Strain Fitness in Synechococcus elongatus PCC 7942 around Synpcc7942_1080

Experiment: D-Cycloserine 0.015625 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntrecG and Synpcc7942_1080 are separated by 629 nucleotidesSynpcc7942_1080 and Synpcc7942_1081 are separated by 6 nucleotides Synpcc7942_1079: recG - ATP-dependent DNA helicase RecG, at 1,088,698 to 1,091,151 recG Synpcc7942_1080: Synpcc7942_1080 - K+ transporter Trk, at 1,091,781 to 1,093,124 _1080 Synpcc7942_1081: Synpcc7942_1081 - hypothetical protein, at 1,093,131 to 1,093,832 _1081 Position (kb) 1091 1092 1093 1094Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 1091.558 kb on + strandat 1091.611 kb on + strandat 1091.751 kb on + strandat 1091.941 kb on + strand, within Synpcc7942_1080at 1092.033 kb on + strand, within Synpcc7942_1080at 1092.250 kb on - strand, within Synpcc7942_1080at 1092.274 kb on + strand, within Synpcc7942_1080at 1092.340 kb on - strand, within Synpcc7942_1080at 1092.705 kb on - strand, within Synpcc7942_1080at 1092.707 kb on - strand, within Synpcc7942_1080at 1092.740 kb on - strand, within Synpcc7942_1080at 1092.958 kb on + strand, within Synpcc7942_1080at 1092.958 kb on + strand, within Synpcc7942_1080at 1093.299 kb on + strand, within Synpcc7942_1081at 1093.490 kb on - strand, within Synpcc7942_1081at 1093.592 kb on - strand, within Synpcc7942_1081at 1093.611 kb on - strand, within Synpcc7942_1081at 1093.615 kb on + strand, within Synpcc7942_1081at 1093.760 kb on + strand, within Synpcc7942_1081at 1093.779 kb on + strandat 1093.856 kb on + strandat 1093.856 kb on + strandat 1093.864 kb on - strandat 1093.885 kb on + strandat 1093.891 kb on - strandat 1093.895 kb on + strandat 1093.895 kb on - strandat 1093.910 kb on - strandat 1093.910 kb on - strandat 1093.936 kb on + strandat 1093.957 kb on - strandat 1094.002 kb on - strandat 1094.111 kb on + strandat 1094.116 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Cycloserine 0.015625 mg/ml
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1,091,558 + -0.1
1,091,611 + +0.6
1,091,751 + -2.1
1,091,941 + Synpcc7942_1080 0.12 -0.9
1,092,033 + Synpcc7942_1080 0.19 -1.7
1,092,250 - Synpcc7942_1080 0.35 +0.1
1,092,274 + Synpcc7942_1080 0.37 -1.3
1,092,340 - Synpcc7942_1080 0.42 -1.4
1,092,705 - Synpcc7942_1080 0.69 -1.1
1,092,707 - Synpcc7942_1080 0.69 -2.9
1,092,740 - Synpcc7942_1080 0.71 -3.7
1,092,958 + Synpcc7942_1080 0.88 -2.9
1,092,958 + Synpcc7942_1080 0.88 -2.9
1,093,299 + Synpcc7942_1081 0.24 -0.5
1,093,490 - Synpcc7942_1081 0.51 -2.3
1,093,592 - Synpcc7942_1081 0.66 +0.7
1,093,611 - Synpcc7942_1081 0.68 -1.4
1,093,615 + Synpcc7942_1081 0.69 -1.4
1,093,760 + Synpcc7942_1081 0.90 -0.1
1,093,779 + -2.4
1,093,856 + -1.3
1,093,856 + +0.6
1,093,864 - -0.2
1,093,885 + -2.9
1,093,891 - +0.2
1,093,895 + -0.4
1,093,895 - +1.2
1,093,910 - +0.9
1,093,910 - -1.5
1,093,936 + +2.2
1,093,957 - -1.5
1,094,002 - +0.5
1,094,111 + -1.1
1,094,116 - +0.2

Or see this region's nucleotide sequence