Experiment: D-Cycloserine 0.015625 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Synpcc7942_0981 and Synpcc7942_0982 are separated by 58 nucleotides Synpcc7942_0982 and deoC are separated by 19 nucleotides deoC and recO overlap by 4 nucleotides recO and Synpcc7942_0985 overlap by 17 nucleotides
Synpcc7942_0981: Synpcc7942_0981 - hypothetical protein, at 989,800 to 991,494
_0981
Synpcc7942_0982: Synpcc7942_0982 - hypothetical protein, at 991,553 to 992,167
_0982
Synpcc7942_0983: deoC - deoxyribose-phosphate aldolase, at 992,187 to 992,873
deoC
Synpcc7942_0984: recO - DNA repair protein RecO, at 992,870 to 993,670
recO
Synpcc7942_0985: Synpcc7942_0985 - hypothetical protein, at 993,654 to 995,036
_0985
Position (kb) 992
993 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 991.212 kb on - strand, within Synpcc7942_0981 at 991.236 kb on + strand, within Synpcc7942_0981 at 991.244 kb on - strand, within Synpcc7942_0981 at 991.249 kb on + strand, within Synpcc7942_0981 at 991.318 kb on + strand, within Synpcc7942_0981 at 991.341 kb on - strand at 991.348 kb on - strand at 991.348 kb on - strand at 991.350 kb on - strand at 991.350 kb on - strand at 991.420 kb on - strand at 991.432 kb on + strand at 991.432 kb on + strand at 991.440 kb on - strand at 991.465 kb on - strand at 991.478 kb on + strand at 991.478 kb on + strand at 991.499 kb on + strand at 991.499 kb on + strand at 991.499 kb on + strand at 991.507 kb on - strand at 991.509 kb on + strand at 991.526 kb on + strand at 991.534 kb on - strand at 991.536 kb on - strand at 991.544 kb on - strand at 991.548 kb on + strand at 991.548 kb on + strand at 991.554 kb on - strand at 991.555 kb on + strand at 991.556 kb on - strand at 991.556 kb on - strand at 991.567 kb on + strand at 991.580 kb on + strand at 991.584 kb on + strand at 991.657 kb on + strand, within Synpcc7942_0982 at 991.660 kb on - strand, within Synpcc7942_0982 at 991.660 kb on - strand, within Synpcc7942_0982 at 991.684 kb on - strand, within Synpcc7942_0982 at 991.693 kb on + strand, within Synpcc7942_0982 at 991.706 kb on - strand, within Synpcc7942_0982 at 991.706 kb on - strand, within Synpcc7942_0982 at 991.706 kb on - strand, within Synpcc7942_0982 at 991.778 kb on + strand, within Synpcc7942_0982 at 991.786 kb on - strand, within Synpcc7942_0982 at 991.806 kb on - strand, within Synpcc7942_0982 at 991.904 kb on - strand, within Synpcc7942_0982 at 991.927 kb on - strand, within Synpcc7942_0982 at 991.931 kb on + strand, within Synpcc7942_0982 at 992.183 kb on + strand at 992.183 kb on + strand at 992.183 kb on + strand at 992.183 kb on + strand at 992.191 kb on - strand at 992.213 kb on - strand at 992.219 kb on + strand at 992.257 kb on + strand, within deoC at 992.265 kb on - strand, within deoC at 992.320 kb on - strand, within deoC at 992.325 kb on - strand, within deoC at 992.343 kb on - strand, within deoC at 992.353 kb on + strand, within deoC at 992.368 kb on + strand, within deoC at 992.370 kb on + strand, within deoC at 992.376 kb on - strand, within deoC at 992.426 kb on + strand, within deoC at 992.426 kb on + strand, within deoC at 992.426 kb on + strand, within deoC at 992.434 kb on - strand, within deoC at 992.434 kb on - strand, within deoC at 992.434 kb on - strand, within deoC at 992.434 kb on - strand, within deoC at 992.434 kb on - strand, within deoC at 992.434 kb on - strand, within deoC at 992.468 kb on + strand, within deoC at 992.492 kb on - strand, within deoC at 992.492 kb on - strand, within deoC at 992.514 kb on + strand, within deoC at 992.517 kb on - strand, within deoC at 992.518 kb on - strand, within deoC at 992.523 kb on + strand, within deoC at 992.557 kb on - strand, within deoC at 992.557 kb on - strand, within deoC at 992.562 kb on + strand, within deoC at 992.613 kb on - strand, within deoC at 992.624 kb on + strand, within deoC at 992.629 kb on + strand, within deoC at 992.631 kb on - strand, within deoC at 992.637 kb on - strand, within deoC at 992.657 kb on + strand, within deoC at 992.660 kb on - strand, within deoC at 992.665 kb on - strand, within deoC at 992.665 kb on - strand, within deoC at 992.665 kb on - strand, within deoC at 992.665 kb on - strand, within deoC at 992.685 kb on + strand, within deoC at 992.693 kb on - strand, within deoC at 992.718 kb on + strand, within deoC at 992.765 kb on + strand, within deoC at 992.786 kb on - strand, within deoC at 992.796 kb on + strand, within deoC at 992.809 kb on + strand at 992.829 kb on - strand at 992.840 kb on + strand at 992.842 kb on - strand at 992.849 kb on - strand at 992.859 kb on - strand at 992.859 kb on - strand at 992.867 kb on + strand at 992.875 kb on - strand at 992.878 kb on + strand at 992.886 kb on - strand at 993.610 kb on + strand at 993.634 kb on - strand at 993.643 kb on + strand at 993.648 kb on - strand at 993.724 kb on + strand at 993.724 kb on + strand at 993.746 kb on + strand at 993.754 kb on - strand at 993.754 kb on - strand at 993.758 kb on + strand at 993.790 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction D-Cycloserine 0.015625 mg/ml remove 991,212 - Synpcc7942_0981 0.83 -3.4 991,236 + Synpcc7942_0981 0.85 -1.1 991,244 - Synpcc7942_0981 0.85 -0.5 991,249 + Synpcc7942_0981 0.85 -1.4 991,318 + Synpcc7942_0981 0.90 -0.7 991,341 - +0.9 991,348 - -0.1 991,348 - -1.1 991,350 - -1.9 991,350 - -1.7 991,420 - -1.7 991,432 + -3.1 991,432 + -3.4 991,440 - -1.1 991,465 - -1.7 991,478 + -0.1 991,478 + -1.7 991,499 + +0.0 991,499 + -2.3 991,499 + -1.1 991,507 - -1.1 991,509 + +2.5 991,526 + -1.1 991,534 - -1.7 991,536 - -2.9 991,544 - +0.3 991,548 + -2.5 991,548 + -0.7 991,554 - -1.0 991,555 + -2.1 991,556 - -1.9 991,556 - -1.7 991,567 + -1.1 991,580 + -0.1 991,584 + -2.0 991,657 + Synpcc7942_0982 0.17 +0.3 991,660 - Synpcc7942_0982 0.17 +0.3 991,660 - Synpcc7942_0982 0.17 +1.9 991,684 - Synpcc7942_0982 0.21 +0.1 991,693 + Synpcc7942_0982 0.23 +1.4 991,706 - Synpcc7942_0982 0.25 -1.1 991,706 - Synpcc7942_0982 0.25 +0.7 991,706 - Synpcc7942_0982 0.25 +0.6 991,778 + Synpcc7942_0982 0.37 +0.1 991,786 - Synpcc7942_0982 0.38 -0.3 991,806 - Synpcc7942_0982 0.41 -0.7 991,904 - Synpcc7942_0982 0.57 -1.1 991,927 - Synpcc7942_0982 0.61 -0.2 991,931 + Synpcc7942_0982 0.61 -0.7 992,183 + -2.4 992,183 + +0.9 992,183 + +1.0 992,183 + +0.7 992,191 - -0.1 992,213 - +1.1 992,219 + -0.9 992,257 + deoC Synpcc7942_0983 0.10 -0.7 992,265 - deoC Synpcc7942_0983 0.11 -1.3 992,320 - deoC Synpcc7942_0983 0.19 +0.3 992,325 - deoC Synpcc7942_0983 0.20 +0.3 992,343 - deoC Synpcc7942_0983 0.23 -0.3 992,353 + deoC Synpcc7942_0983 0.24 -0.2 992,368 + deoC Synpcc7942_0983 0.26 +1.5 992,370 + deoC Synpcc7942_0983 0.27 -1.3 992,376 - deoC Synpcc7942_0983 0.28 -0.7 992,426 + deoC Synpcc7942_0983 0.35 +0.9 992,426 + deoC Synpcc7942_0983 0.35 +0.6 992,426 + deoC Synpcc7942_0983 0.35 +0.6 992,434 - deoC Synpcc7942_0983 0.36 +0.3 992,434 - deoC Synpcc7942_0983 0.36 +0.5 992,434 - deoC Synpcc7942_0983 0.36 +0.8 992,434 - deoC Synpcc7942_0983 0.36 +1.4 992,434 - deoC Synpcc7942_0983 0.36 +0.3 992,434 - deoC Synpcc7942_0983 0.36 +1.7 992,468 + deoC Synpcc7942_0983 0.41 +0.8 992,492 - deoC Synpcc7942_0983 0.44 +1.6 992,492 - deoC Synpcc7942_0983 0.44 +2.3 992,514 + deoC Synpcc7942_0983 0.48 +0.9 992,517 - deoC Synpcc7942_0983 0.48 +0.5 992,518 - deoC Synpcc7942_0983 0.48 -0.6 992,523 + deoC Synpcc7942_0983 0.49 -1.2 992,557 - deoC Synpcc7942_0983 0.54 +1.5 992,557 - deoC Synpcc7942_0983 0.54 +0.8 992,562 + deoC Synpcc7942_0983 0.55 +0.3 992,613 - deoC Synpcc7942_0983 0.62 +0.9 992,624 + deoC Synpcc7942_0983 0.64 +0.2 992,629 + deoC Synpcc7942_0983 0.64 +0.6 992,631 - deoC Synpcc7942_0983 0.65 +0.1 992,637 - deoC Synpcc7942_0983 0.66 -0.1 992,657 + deoC Synpcc7942_0983 0.68 +0.5 992,660 - deoC Synpcc7942_0983 0.69 +0.5 992,665 - deoC Synpcc7942_0983 0.70 +0.6 992,665 - deoC Synpcc7942_0983 0.70 -1.4 992,665 - deoC Synpcc7942_0983 0.70 -0.1 992,665 - deoC Synpcc7942_0983 0.70 +0.8 992,685 + deoC Synpcc7942_0983 0.72 -0.4 992,693 - deoC Synpcc7942_0983 0.74 +1.3 992,718 + deoC Synpcc7942_0983 0.77 +0.0 992,765 + deoC Synpcc7942_0983 0.84 -0.1 992,786 - deoC Synpcc7942_0983 0.87 +1.2 992,796 + deoC Synpcc7942_0983 0.89 +1.2 992,809 + -0.7 992,829 - +0.7 992,840 + -1.3 992,842 - -1.9 992,849 - -0.4 992,859 - +0.7 992,859 - +0.4 992,867 + -1.7 992,875 - -0.5 992,878 + +0.4 992,886 - +0.9 993,610 + -0.1 993,634 - +0.1 993,643 + +0.5 993,648 - +0.9 993,724 + +0.2 993,724 + -1.1 993,746 + -2.7 993,754 - +0.5 993,754 - -0.7 993,758 + -0.1 993,790 - -0.8
Or see this region's nucleotide sequence