Experiment: D-Cycloserine 0.015625 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Synpcc7942_0964 and amt1 are separated by 13 nucleotides amt1 and Synpcc7942_0966 are separated by 8 nucleotides Synpcc7942_0966 and hemC are separated by 152 nucleotides
Synpcc7942_0964: Synpcc7942_0964 - hypothetical protein, at 971,856 to 972,374
_0964
Synpcc7942_0965: amt1 - ammonium transporter protein Amt1-like, at 972,388 to 973,350
amt1
Synpcc7942_0966: Synpcc7942_0966 - hypothetical protein, at 973,359 to 973,946
_0966
Synpcc7942_0967: hemC - porphobilinogen deaminase, at 974,099 to 975,061
hemC
Position (kb) 973
974 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 972.374 kb on + strand at 972.376 kb on - strand at 972.376 kb on - strand at 972.380 kb on + strand at 972.385 kb on + strand at 972.392 kb on - strand at 972.407 kb on + strand at 972.407 kb on + strand at 972.407 kb on + strand at 972.407 kb on + strand at 972.415 kb on - strand at 972.424 kb on + strand at 972.424 kb on + strand at 972.432 kb on - strand at 972.446 kb on + strand at 972.458 kb on + strand at 972.458 kb on + strand at 972.466 kb on - strand at 972.486 kb on - strand, within amt1 at 972.495 kb on + strand, within amt1 at 972.495 kb on + strand, within amt1 at 972.498 kb on - strand, within amt1 at 972.502 kb on + strand, within amt1 at 972.503 kb on - strand, within amt1 at 972.503 kb on - strand, within amt1 at 972.529 kb on - strand, within amt1 at 972.583 kb on + strand, within amt1 at 972.596 kb on + strand, within amt1 at 972.633 kb on + strand, within amt1 at 972.709 kb on + strand, within amt1 at 972.723 kb on - strand, within amt1 at 972.732 kb on + strand, within amt1 at 972.740 kb on - strand, within amt1 at 972.766 kb on + strand, within amt1 at 972.821 kb on - strand, within amt1 at 972.830 kb on - strand, within amt1 at 972.830 kb on - strand, within amt1 at 972.835 kb on - strand, within amt1 at 972.867 kb on - strand, within amt1 at 972.872 kb on - strand, within amt1 at 972.894 kb on - strand, within amt1 at 972.899 kb on + strand at 972.924 kb on + strand, within amt1 at 972.956 kb on - strand, within amt1 at 972.958 kb on + strand, within amt1 at 972.959 kb on + strand, within amt1 at 972.961 kb on + strand, within amt1 at 972.980 kb on + strand, within amt1 at 972.988 kb on - strand, within amt1 at 973.004 kb on + strand, within amt1 at 973.006 kb on - strand, within amt1 at 973.050 kb on + strand, within amt1 at 973.068 kb on - strand, within amt1 at 973.084 kb on + strand, within amt1 at 973.115 kb on - strand, within amt1 at 973.115 kb on - strand, within amt1 at 973.118 kb on - strand, within amt1 at 973.120 kb on - strand, within amt1 at 973.120 kb on - strand, within amt1 at 973.153 kb on + strand, within amt1 at 973.161 kb on - strand, within amt1 at 973.232 kb on + strand, within amt1 at 973.240 kb on - strand, within amt1 at 973.306 kb on - strand at 973.312 kb on + strand at 973.320 kb on + strand at 973.324 kb on + strand at 973.345 kb on + strand at 973.352 kb on - strand at 973.352 kb on - strand at 973.357 kb on + strand at 973.357 kb on + strand at 973.357 kb on + strand at 973.357 kb on + strand at 973.357 kb on + strand at 973.357 kb on + strand at 973.362 kb on + strand at 973.365 kb on - strand at 973.380 kb on - strand at 973.382 kb on + strand at 973.385 kb on - strand at 973.388 kb on - strand at 973.401 kb on - strand at 973.401 kb on - strand at 973.406 kb on - strand at 973.493 kb on + strand, within Synpcc7942_0966 at 973.524 kb on - strand, within Synpcc7942_0966 at 973.524 kb on - strand, within Synpcc7942_0966 at 973.551 kb on - strand, within Synpcc7942_0966 at 973.573 kb on + strand, within Synpcc7942_0966 at 973.575 kb on - strand, within Synpcc7942_0966 at 973.592 kb on + strand, within Synpcc7942_0966 at 973.592 kb on + strand, within Synpcc7942_0966 at 973.592 kb on + strand, within Synpcc7942_0966 at 973.592 kb on + strand, within Synpcc7942_0966 at 973.592 kb on + strand, within Synpcc7942_0966 at 973.592 kb on + strand, within Synpcc7942_0966 at 973.594 kb on + strand, within Synpcc7942_0966 at 973.600 kb on - strand, within Synpcc7942_0966 at 973.600 kb on - strand, within Synpcc7942_0966 at 973.602 kb on + strand, within Synpcc7942_0966 at 973.602 kb on - strand, within Synpcc7942_0966 at 973.607 kb on + strand, within Synpcc7942_0966 at 973.610 kb on - strand, within Synpcc7942_0966 at 973.612 kb on + strand, within Synpcc7942_0966 at 973.620 kb on - strand, within Synpcc7942_0966 at 973.630 kb on - strand, within Synpcc7942_0966 at 973.646 kb on - strand, within Synpcc7942_0966 at 973.653 kb on + strand, within Synpcc7942_0966 at 973.661 kb on - strand, within Synpcc7942_0966 at 973.695 kb on + strand, within Synpcc7942_0966 at 973.704 kb on - strand, within Synpcc7942_0966 at 973.706 kb on + strand, within Synpcc7942_0966 at 973.706 kb on + strand, within Synpcc7942_0966 at 973.714 kb on - strand, within Synpcc7942_0966 at 973.714 kb on - strand, within Synpcc7942_0966 at 973.714 kb on - strand, within Synpcc7942_0966 at 973.714 kb on - strand, within Synpcc7942_0966 at 973.716 kb on + strand, within Synpcc7942_0966 at 973.716 kb on - strand, within Synpcc7942_0966 at 973.716 kb on - strand, within Synpcc7942_0966 at 973.716 kb on - strand, within Synpcc7942_0966 at 973.720 kb on + strand, within Synpcc7942_0966 at 973.724 kb on - strand, within Synpcc7942_0966 at 973.728 kb on - strand, within Synpcc7942_0966 at 973.811 kb on + strand, within Synpcc7942_0966 at 973.817 kb on - strand, within Synpcc7942_0966 at 973.824 kb on - strand, within Synpcc7942_0966 at 973.824 kb on - strand, within Synpcc7942_0966 at 973.908 kb on - strand at 973.932 kb on - strand at 973.932 kb on - strand at 973.932 kb on - strand at 973.932 kb on - strand at 973.959 kb on + strand at 973.959 kb on + strand at 973.959 kb on + strand at 973.959 kb on + strand at 973.964 kb on + strand at 973.964 kb on + strand at 973.967 kb on - strand at 973.967 kb on - strand at 973.967 kb on - strand at 973.971 kb on + strand at 973.971 kb on + strand at 973.972 kb on + strand at 973.972 kb on - strand at 973.979 kb on - strand at 973.987 kb on + strand at 973.996 kb on - strand at 973.996 kb on - strand at 974.000 kb on - strand at 974.000 kb on - strand at 974.097 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction D-Cycloserine 0.015625 mg/ml remove 972,374 + -0.7 972,376 - -0.4 972,376 - +0.6 972,380 + -2.1 972,385 + +1.3 972,392 - +0.6 972,407 + +0.5 972,407 + -0.4 972,407 + +0.4 972,407 + -0.4 972,415 - +0.6 972,424 + +1.3 972,424 + -1.3 972,432 - -0.3 972,446 + -0.6 972,458 + +0.6 972,458 + -0.7 972,466 - -0.1 972,486 - amt1 Synpcc7942_0965 0.10 -1.2 972,495 + amt1 Synpcc7942_0965 0.11 +1.5 972,495 + amt1 Synpcc7942_0965 0.11 +0.6 972,498 - amt1 Synpcc7942_0965 0.11 -1.8 972,502 + amt1 Synpcc7942_0965 0.12 +0.3 972,503 - amt1 Synpcc7942_0965 0.12 +0.6 972,503 - amt1 Synpcc7942_0965 0.12 -2.4 972,529 - amt1 Synpcc7942_0965 0.15 +0.6 972,583 + amt1 Synpcc7942_0965 0.20 -0.6 972,596 + amt1 Synpcc7942_0965 0.22 +2.5 972,633 + amt1 Synpcc7942_0965 0.25 -1.7 972,709 + amt1 Synpcc7942_0965 0.33 +0.7 972,723 - amt1 Synpcc7942_0965 0.35 -0.5 972,732 + amt1 Synpcc7942_0965 0.36 +1.9 972,740 - amt1 Synpcc7942_0965 0.37 -0.1 972,766 + amt1 Synpcc7942_0965 0.39 -1.1 972,821 - amt1 Synpcc7942_0965 0.45 -1.1 972,830 - amt1 Synpcc7942_0965 0.46 -0.1 972,830 - amt1 Synpcc7942_0965 0.46 -2.9 972,835 - amt1 Synpcc7942_0965 0.46 +0.6 972,867 - amt1 Synpcc7942_0965 0.50 -0.7 972,872 - amt1 Synpcc7942_0965 0.50 -2.7 972,894 - amt1 Synpcc7942_0965 0.53 +0.5 972,899 + +0.4 972,924 + amt1 Synpcc7942_0965 0.56 +0.1 972,956 - amt1 Synpcc7942_0965 0.59 +0.3 972,958 + amt1 Synpcc7942_0965 0.59 -1.4 972,959 + amt1 Synpcc7942_0965 0.59 +0.1 972,961 + amt1 Synpcc7942_0965 0.60 -0.8 972,980 + amt1 Synpcc7942_0965 0.61 +0.4 972,988 - amt1 Synpcc7942_0965 0.62 -1.1 973,004 + amt1 Synpcc7942_0965 0.64 +0.6 973,006 - amt1 Synpcc7942_0965 0.64 -0.4 973,050 + amt1 Synpcc7942_0965 0.69 +0.6 973,068 - amt1 Synpcc7942_0965 0.71 -0.8 973,084 + amt1 Synpcc7942_0965 0.72 -0.1 973,115 - amt1 Synpcc7942_0965 0.75 -1.1 973,115 - amt1 Synpcc7942_0965 0.75 -1.3 973,118 - amt1 Synpcc7942_0965 0.76 +0.3 973,120 - amt1 Synpcc7942_0965 0.76 -0.7 973,120 - amt1 Synpcc7942_0965 0.76 +0.1 973,153 + amt1 Synpcc7942_0965 0.79 +0.9 973,161 - amt1 Synpcc7942_0965 0.80 -0.2 973,232 + amt1 Synpcc7942_0965 0.88 -0.1 973,240 - amt1 Synpcc7942_0965 0.88 -0.4 973,306 - +0.7 973,312 + +0.9 973,320 + +1.1 973,324 + +2.7 973,345 + +0.3 973,352 - +1.9 973,352 - -0.4 973,357 + +1.5 973,357 + -1.3 973,357 + -0.4 973,357 + +0.5 973,357 + -0.2 973,357 + -2.1 973,362 + +1.2 973,365 - -2.1 973,380 - +0.5 973,382 + -0.3 973,385 - +0.9 973,388 - +0.9 973,401 - -0.8 973,401 - +0.5 973,406 - -0.2 973,493 + Synpcc7942_0966 0.23 -0.4 973,524 - Synpcc7942_0966 0.28 +1.9 973,524 - Synpcc7942_0966 0.28 +0.5 973,551 - Synpcc7942_0966 0.33 +2.4 973,573 + Synpcc7942_0966 0.36 +1.1 973,575 - Synpcc7942_0966 0.37 -0.5 973,592 + Synpcc7942_0966 0.40 +0.6 973,592 + Synpcc7942_0966 0.40 +0.9 973,592 + Synpcc7942_0966 0.40 -0.1 973,592 + Synpcc7942_0966 0.40 -0.7 973,592 + Synpcc7942_0966 0.40 +3.2 973,592 + Synpcc7942_0966 0.40 -1.1 973,594 + Synpcc7942_0966 0.40 -1.2 973,600 - Synpcc7942_0966 0.41 +1.7 973,600 - Synpcc7942_0966 0.41 +1.0 973,602 + Synpcc7942_0966 0.41 -0.8 973,602 - Synpcc7942_0966 0.41 -1.9 973,607 + Synpcc7942_0966 0.42 +0.3 973,610 - Synpcc7942_0966 0.43 -2.1 973,612 + Synpcc7942_0966 0.43 +1.9 973,620 - Synpcc7942_0966 0.44 +0.8 973,630 - Synpcc7942_0966 0.46 +0.5 973,646 - Synpcc7942_0966 0.49 +1.3 973,653 + Synpcc7942_0966 0.50 +0.3 973,661 - Synpcc7942_0966 0.51 -1.4 973,695 + Synpcc7942_0966 0.57 -1.7 973,704 - Synpcc7942_0966 0.59 +0.9 973,706 + Synpcc7942_0966 0.59 +0.8 973,706 + Synpcc7942_0966 0.59 -0.1 973,714 - Synpcc7942_0966 0.60 +1.5 973,714 - Synpcc7942_0966 0.60 -0.1 973,714 - Synpcc7942_0966 0.60 +0.2 973,714 - Synpcc7942_0966 0.60 -1.1 973,716 + Synpcc7942_0966 0.61 +2.3 973,716 - Synpcc7942_0966 0.61 +0.3 973,716 - Synpcc7942_0966 0.61 +1.5 973,716 - Synpcc7942_0966 0.61 +0.5 973,720 + Synpcc7942_0966 0.61 -0.5 973,724 - Synpcc7942_0966 0.62 +2.2 973,728 - Synpcc7942_0966 0.63 +1.5 973,811 + Synpcc7942_0966 0.77 -0.1 973,817 - Synpcc7942_0966 0.78 +0.4 973,824 - Synpcc7942_0966 0.79 +1.6 973,824 - Synpcc7942_0966 0.79 -2.0 973,908 - +0.2 973,932 - +0.2 973,932 - +0.5 973,932 - -1.1 973,932 - +0.4 973,959 + +0.9 973,959 + -1.7 973,959 + -0.5 973,959 + +0.3 973,964 + +0.4 973,964 + -0.1 973,967 - +0.3 973,967 - -1.6 973,967 - -0.1 973,971 + -1.4 973,971 + -0.1 973,972 + -2.7 973,972 - +0.6 973,979 - -1.4 973,987 + -1.1 973,996 - +1.2 973,996 - -0.1 974,000 - +0.5 974,000 - -0.5 974,097 - +0.1
Or see this region's nucleotide sequence