Strain Fitness in Synechococcus elongatus PCC 7942 around Synpcc7942_0911

Experiment: D-Cycloserine 0.015625 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntycf57 and Synpcc7942_0910 are separated by 68 nucleotidesSynpcc7942_0910 and Synpcc7942_0911 are separated by 9 nucleotidesSynpcc7942_0911 and dnaX are separated by 75 nucleotides Synpcc7942_0909: ycf57 - HesB/YadR/YfhF, at 918,135 to 918,491 ycf57 Synpcc7942_0910: Synpcc7942_0910 - hypothetical protein, at 918,560 to 918,988 _0910 Synpcc7942_0911: Synpcc7942_0911 - hypothetical protein, at 918,998 to 919,249 _0911 Synpcc7942_0912: dnaX - DNA polymerase III, tau subunit, at 919,325 to 921,283 dnaX Position (kb) 918 919 920Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3 4at 918.003 kb on + strandat 918.003 kb on + strandat 918.003 kb on + strandat 918.003 kb on + strandat 918.003 kb on - strandat 918.011 kb on - strandat 918.011 kb on - strandat 918.011 kb on - strandat 918.016 kb on - strandat 918.023 kb on - strandat 918.029 kb on - strandat 918.048 kb on + strandat 918.058 kb on - strandat 918.074 kb on - strandat 918.112 kb on - strandat 918.124 kb on + strandat 918.132 kb on - strandat 918.205 kb on - strand, within ycf57at 918.275 kb on + strand, within ycf57at 918.275 kb on + strand, within ycf57at 918.275 kb on + strand, within ycf57at 918.275 kb on + strand, within ycf57at 918.275 kb on + strand, within ycf57at 918.275 kb on + strand, within ycf57at 918.275 kb on + strand, within ycf57at 918.275 kb on + strand, within ycf57at 918.275 kb on + strand, within ycf57at 918.278 kb on - strand, within ycf57at 918.283 kb on - strand, within ycf57at 918.283 kb on - strand, within ycf57at 918.283 kb on - strand, within ycf57at 918.283 kb on - strand, within ycf57at 918.283 kb on - strand, within ycf57at 918.283 kb on - strand, within ycf57at 918.283 kb on - strand, within ycf57at 918.283 kb on - strand, within ycf57at 918.298 kb on + strandat 918.306 kb on - strand, within ycf57at 918.306 kb on - strand, within ycf57at 918.335 kb on - strand, within ycf57at 918.361 kb on - strand, within ycf57at 918.424 kb on - strand, within ycf57at 918.437 kb on + strand, within ycf57at 918.443 kb on + strand, within ycf57at 918.451 kb on - strand, within ycf57at 918.451 kb on - strand, within ycf57at 918.451 kb on - strand, within ycf57at 918.451 kb on - strand, within ycf57at 918.453 kb on + strand, within ycf57at 918.461 kb on - strandat 918.476 kb on + strandat 918.516 kb on + strandat 918.521 kb on + strandat 918.521 kb on + strandat 918.524 kb on - strandat 918.589 kb on + strandat 918.618 kb on - strand, within Synpcc7942_0910at 918.668 kb on + strand, within Synpcc7942_0910at 918.676 kb on - strand, within Synpcc7942_0910at 918.679 kb on + strand, within Synpcc7942_0910at 918.688 kb on + strand, within Synpcc7942_0910at 918.689 kb on + strand, within Synpcc7942_0910at 918.742 kb on + strand, within Synpcc7942_0910at 918.769 kb on + strand, within Synpcc7942_0910at 918.781 kb on + strand, within Synpcc7942_0910at 918.782 kb on - strand, within Synpcc7942_0910at 918.796 kb on + strand, within Synpcc7942_0910at 918.829 kb on + strand, within Synpcc7942_0910at 918.829 kb on + strand, within Synpcc7942_0910at 918.829 kb on + strand, within Synpcc7942_0910at 918.829 kb on + strand, within Synpcc7942_0910at 918.829 kb on + strand, within Synpcc7942_0910at 918.837 kb on - strand, within Synpcc7942_0910at 918.837 kb on - strand, within Synpcc7942_0910at 918.837 kb on - strand, within Synpcc7942_0910at 918.847 kb on + strand, within Synpcc7942_0910at 918.863 kb on - strand, within Synpcc7942_0910at 918.882 kb on + strand, within Synpcc7942_0910at 918.882 kb on + strand, within Synpcc7942_0910at 918.882 kb on + strandat 918.882 kb on + strand, within Synpcc7942_0910at 918.882 kb on + strand, within Synpcc7942_0910at 918.894 kb on + strand, within Synpcc7942_0910at 918.902 kb on - strand, within Synpcc7942_0910at 918.902 kb on - strand, within Synpcc7942_0910at 918.923 kb on + strand, within Synpcc7942_0910at 918.931 kb on + strand, within Synpcc7942_0910at 918.931 kb on - strand, within Synpcc7942_0910at 918.951 kb on + strandat 918.953 kb on - strandat 918.958 kb on - strandat 918.967 kb on + strandat 918.975 kb on - strandat 918.983 kb on + strandat 918.983 kb on + strandat 918.983 kb on + strandat 918.995 kb on - strandat 919.013 kb on - strandat 919.050 kb on + strand, within Synpcc7942_0911at 919.067 kb on - strandat 919.088 kb on + strand, within Synpcc7942_0911at 919.088 kb on + strand, within Synpcc7942_0911at 919.094 kb on - strandat 919.096 kb on - strand, within Synpcc7942_0911at 919.096 kb on - strand, within Synpcc7942_0911at 919.120 kb on - strand, within Synpcc7942_0911at 919.127 kb on - strand, within Synpcc7942_0911at 919.164 kb on + strand, within Synpcc7942_0911at 919.172 kb on - strand, within Synpcc7942_0911at 919.172 kb on - strand, within Synpcc7942_0911at 919.172 kb on - strand, within Synpcc7942_0911at 919.174 kb on + strand, within Synpcc7942_0911at 919.190 kb on + strand, within Synpcc7942_0911at 919.193 kb on - strand, within Synpcc7942_0911at 919.193 kb on - strandat 919.193 kb on - strand, within Synpcc7942_0911at 919.198 kb on - strand, within Synpcc7942_0911at 919.198 kb on - strand, within Synpcc7942_0911at 919.200 kb on - strand, within Synpcc7942_0911at 919.207 kb on + strand, within Synpcc7942_0911at 919.209 kb on - strand, within Synpcc7942_0911at 919.244 kb on + strandat 919.252 kb on - strandat 919.271 kb on - strandat 919.282 kb on + strandat 919.295 kb on - strandat 919.322 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Cycloserine 0.015625 mg/ml
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918,003 + -4.0
918,003 + +1.4
918,003 + -0.4
918,003 + -2.1
918,003 - -1.1
918,011 - -1.4
918,011 - -0.6
918,011 - -0.5
918,016 - +0.2
918,023 - -1.1
918,029 - +0.6
918,048 + +0.5
918,058 - +0.0
918,074 - -1.1
918,112 - +0.2
918,124 + +0.4
918,132 - -1.1
918,205 - ycf57 Synpcc7942_0909 0.20 -2.1
918,275 + ycf57 Synpcc7942_0909 0.39 -0.6
918,275 + ycf57 Synpcc7942_0909 0.39 -3.4
918,275 + ycf57 Synpcc7942_0909 0.39 +0.7
918,275 + ycf57 Synpcc7942_0909 0.39 +1.1
918,275 + ycf57 Synpcc7942_0909 0.39 -0.1
918,275 + ycf57 Synpcc7942_0909 0.39 +0.4
918,275 + ycf57 Synpcc7942_0909 0.39 -0.7
918,275 + ycf57 Synpcc7942_0909 0.39 +0.3
918,275 + ycf57 Synpcc7942_0909 0.39 -0.1
918,278 - ycf57 Synpcc7942_0909 0.40 -1.1
918,283 - ycf57 Synpcc7942_0909 0.41 -0.8
918,283 - ycf57 Synpcc7942_0909 0.41 +1.5
918,283 - ycf57 Synpcc7942_0909 0.41 -0.1
918,283 - ycf57 Synpcc7942_0909 0.41 +0.3
918,283 - ycf57 Synpcc7942_0909 0.41 -0.1
918,283 - ycf57 Synpcc7942_0909 0.41 +1.2
918,283 - ycf57 Synpcc7942_0909 0.41 -1.1
918,283 - ycf57 Synpcc7942_0909 0.41 +0.1
918,298 + -0.1
918,306 - ycf57 Synpcc7942_0909 0.48 -0.5
918,306 - ycf57 Synpcc7942_0909 0.48 +0.9
918,335 - ycf57 Synpcc7942_0909 0.56 -1.1
918,361 - ycf57 Synpcc7942_0909 0.63 +0.8
918,424 - ycf57 Synpcc7942_0909 0.81 -0.1
918,437 + ycf57 Synpcc7942_0909 0.85 -0.1
918,443 + ycf57 Synpcc7942_0909 0.86 -0.2
918,451 - ycf57 Synpcc7942_0909 0.89 +1.9
918,451 - ycf57 Synpcc7942_0909 0.89 -2.4
918,451 - ycf57 Synpcc7942_0909 0.89 -0.2
918,451 - ycf57 Synpcc7942_0909 0.89 +0.5
918,453 + ycf57 Synpcc7942_0909 0.89 -2.4
918,461 - -0.6
918,476 + +0.2
918,516 + +0.7
918,521 + -0.1
918,521 + -0.3
918,524 - -0.8
918,589 + -1.1
918,618 - Synpcc7942_0910 0.14 -0.1
918,668 + Synpcc7942_0910 0.25 +0.2
918,676 - Synpcc7942_0910 0.27 -0.7
918,679 + Synpcc7942_0910 0.28 -0.1
918,688 + Synpcc7942_0910 0.30 -0.3
918,689 + Synpcc7942_0910 0.30 -2.0
918,742 + Synpcc7942_0910 0.42 +3.2
918,769 + Synpcc7942_0910 0.49 +0.5
918,781 + Synpcc7942_0910 0.52 -0.1
918,782 - Synpcc7942_0910 0.52 -0.3
918,796 + Synpcc7942_0910 0.55 -1.7
918,829 + Synpcc7942_0910 0.63 -0.3
918,829 + Synpcc7942_0910 0.63 +0.9
918,829 + Synpcc7942_0910 0.63 -0.0
918,829 + Synpcc7942_0910 0.63 -0.4
918,829 + Synpcc7942_0910 0.63 +1.0
918,837 - Synpcc7942_0910 0.65 -0.1
918,837 - Synpcc7942_0910 0.65 -1.3
918,837 - Synpcc7942_0910 0.65 -0.7
918,847 + Synpcc7942_0910 0.67 +0.5
918,863 - Synpcc7942_0910 0.71 -0.7
918,882 + Synpcc7942_0910 0.75 +0.2
918,882 + Synpcc7942_0910 0.75 -0.4
918,882 + +0.9
918,882 + Synpcc7942_0910 0.75 +0.4
918,882 + Synpcc7942_0910 0.75 -0.5
918,894 + Synpcc7942_0910 0.78 -0.3
918,902 - Synpcc7942_0910 0.80 -0.3
918,902 - Synpcc7942_0910 0.80 +0.7
918,923 + Synpcc7942_0910 0.85 +0.1
918,931 + Synpcc7942_0910 0.86 +2.0
918,931 - Synpcc7942_0910 0.86 -0.6
918,951 + +0.1
918,953 - +1.1
918,958 - +1.0
918,967 + -0.3
918,975 - +0.9
918,983 + +1.5
918,983 + -0.9
918,983 + -0.5
918,995 - +1.4
919,013 - +1.2
919,050 + Synpcc7942_0911 0.21 +1.0
919,067 - +1.5
919,088 + Synpcc7942_0911 0.36 +1.9
919,088 + Synpcc7942_0911 0.36 -1.7
919,094 - -0.8
919,096 - Synpcc7942_0911 0.39 -1.3
919,096 - Synpcc7942_0911 0.39 +0.4
919,120 - Synpcc7942_0911 0.48 -0.7
919,127 - Synpcc7942_0911 0.51 -1.3
919,164 + Synpcc7942_0911 0.66 -1.9
919,172 - Synpcc7942_0911 0.69 -0.6
919,172 - Synpcc7942_0911 0.69 +0.1
919,172 - Synpcc7942_0911 0.69 +0.0
919,174 + Synpcc7942_0911 0.70 -0.1
919,190 + Synpcc7942_0911 0.76 -2.4
919,193 - Synpcc7942_0911 0.77 -2.3
919,193 - +1.5
919,193 - Synpcc7942_0911 0.77 +1.9
919,198 - Synpcc7942_0911 0.79 +1.7
919,198 - Synpcc7942_0911 0.79 -3.6
919,200 - Synpcc7942_0911 0.80 +2.2
919,207 + Synpcc7942_0911 0.83 -1.5
919,209 - Synpcc7942_0911 0.84 -0.1
919,244 + -0.9
919,252 - -2.3
919,271 - +4.5
919,282 + -0.7
919,295 - -2.1
919,322 - -0.7

Or see this region's nucleotide sequence