Experiment: D-Cycloserine 0.015625 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt rne and rhnB overlap by 17 nucleotides rhnB and Synpcc7942_0880 are separated by 22 nucleotides Synpcc7942_0880 and pheA are separated by 79 nucleotides pheA and lon are separated by 12 nucleotides
Synpcc7942_0878: rne - ribonuclease, Rne/Rng family, at 883,835 to 886,261
rne
Synpcc7942_0879: rhnB - RNase HII, at 886,245 to 886,892
rhnB
Synpcc7942_0880: Synpcc7942_0880 - hypothetical protein, at 886,915 to 887,472
_0880
Synpcc7942_0881: pheA - prephenate dehydratase, at 887,552 to 888,427
pheA
Synpcc7942_0882: lon - Peptidase S16, lon-like, at 888,440 to 889,096
lon
Position (kb) 886
887
888 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 885.962 kb on + strand, within rne at 885.962 kb on + strand, within rne at 885.967 kb on + strand, within rne at 885.986 kb on - strand, within rne at 885.987 kb on + strand, within rne at 885.987 kb on + strand, within rne at 885.997 kb on + strand, within rne at 885.997 kb on + strand, within rne at 885.997 kb on + strand, within rne at 886.005 kb on - strand at 886.005 kb on - strand, within rne at 886.048 kb on - strand at 886.056 kb on + strand at 886.064 kb on - strand at 886.123 kb on + strand at 886.131 kb on - strand at 886.170 kb on - strand at 886.187 kb on + strand at 886.268 kb on - strand at 886.316 kb on + strand, within rhnB at 886.459 kb on - strand, within rhnB at 886.465 kb on + strand, within rhnB at 886.481 kb on + strand, within rhnB at 886.488 kb on + strand, within rhnB at 886.488 kb on + strand, within rhnB at 886.488 kb on + strand, within rhnB at 886.488 kb on + strand, within rhnB at 886.493 kb on + strand, within rhnB at 886.494 kb on + strand, within rhnB at 886.495 kb on - strand, within rhnB at 886.496 kb on - strand, within rhnB at 886.496 kb on - strand, within rhnB at 886.576 kb on - strand, within rhnB at 886.591 kb on - strand, within rhnB at 886.591 kb on - strand, within rhnB at 886.660 kb on - strand, within rhnB at 886.714 kb on - strand, within rhnB at 886.714 kb on - strand, within rhnB at 886.777 kb on - strand, within rhnB at 886.788 kb on + strand, within rhnB at 886.788 kb on + strand, within rhnB at 886.788 kb on + strand, within rhnB at 886.794 kb on - strand, within rhnB at 886.796 kb on - strand, within rhnB at 886.835 kb on - strand at 886.838 kb on + strand at 886.881 kb on + strand at 886.886 kb on + strand at 886.886 kb on + strand at 886.889 kb on - strand at 886.889 kb on - strand at 886.946 kb on + strand at 887.024 kb on + strand, within Synpcc7942_0880 at 887.024 kb on + strand, within Synpcc7942_0880 at 887.024 kb on + strand, within Synpcc7942_0880 at 887.032 kb on - strand at 887.032 kb on - strand, within Synpcc7942_0880 at 887.032 kb on - strand, within Synpcc7942_0880 at 887.042 kb on - strand, within Synpcc7942_0880 at 887.048 kb on + strand, within Synpcc7942_0880 at 887.090 kb on + strand, within Synpcc7942_0880 at 887.117 kb on + strand, within Synpcc7942_0880 at 887.123 kb on + strand, within Synpcc7942_0880 at 887.123 kb on + strand, within Synpcc7942_0880 at 887.123 kb on + strand, within Synpcc7942_0880 at 887.123 kb on - strand, within Synpcc7942_0880 at 887.191 kb on - strand, within Synpcc7942_0880 at 887.262 kb on + strand, within Synpcc7942_0880 at 887.303 kb on - strand, within Synpcc7942_0880 at 887.332 kb on + strand, within Synpcc7942_0880 at 887.332 kb on + strand, within Synpcc7942_0880 at 887.354 kb on + strand, within Synpcc7942_0880 at 887.356 kb on + strand, within Synpcc7942_0880 at 887.356 kb on + strand, within Synpcc7942_0880 at 887.356 kb on + strand, within Synpcc7942_0880 at 887.362 kb on - strand, within Synpcc7942_0880 at 887.362 kb on - strand, within Synpcc7942_0880 at 887.393 kb on + strand, within Synpcc7942_0880 at 887.396 kb on - strand, within Synpcc7942_0880 at 887.406 kb on - strand, within Synpcc7942_0880 at 887.540 kb on - strand at 887.542 kb on + strand at 887.556 kb on - strand at 887.556 kb on - strand at 888.387 kb on + strand at 888.387 kb on + strand at 888.395 kb on - strand at 888.395 kb on - strand at 888.395 kb on - strand at 888.445 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction D-Cycloserine 0.015625 mg/ml remove 885,962 + rne Synpcc7942_0878 0.88 -2.6 885,962 + rne Synpcc7942_0878 0.88 -1.5 885,967 + rne Synpcc7942_0878 0.88 +0.2 885,986 - rne Synpcc7942_0878 0.89 -1.1 885,987 + rne Synpcc7942_0878 0.89 +1.0 885,987 + rne Synpcc7942_0878 0.89 +1.2 885,997 + rne Synpcc7942_0878 0.89 +1.6 885,997 + rne Synpcc7942_0878 0.89 +0.1 885,997 + rne Synpcc7942_0878 0.89 -0.9 886,005 - -0.7 886,005 - rne Synpcc7942_0878 0.89 -1.1 886,048 - -1.7 886,056 + +0.9 886,064 - +1.9 886,123 + -2.3 886,131 - -1.6 886,170 - -2.5 886,187 + +0.9 886,268 - +0.3 886,316 + rhnB Synpcc7942_0879 0.11 -1.1 886,459 - rhnB Synpcc7942_0879 0.33 -0.5 886,465 + rhnB Synpcc7942_0879 0.34 -0.8 886,481 + rhnB Synpcc7942_0879 0.36 +1.5 886,488 + rhnB Synpcc7942_0879 0.38 +0.0 886,488 + rhnB Synpcc7942_0879 0.38 +0.5 886,488 + rhnB Synpcc7942_0879 0.38 +1.2 886,488 + rhnB Synpcc7942_0879 0.38 -1.7 886,493 + rhnB Synpcc7942_0879 0.38 -0.7 886,494 + rhnB Synpcc7942_0879 0.38 +0.6 886,495 - rhnB Synpcc7942_0879 0.39 -1.0 886,496 - rhnB Synpcc7942_0879 0.39 -0.1 886,496 - rhnB Synpcc7942_0879 0.39 -1.1 886,576 - rhnB Synpcc7942_0879 0.51 +0.5 886,591 - rhnB Synpcc7942_0879 0.53 +0.1 886,591 - rhnB Synpcc7942_0879 0.53 +0.1 886,660 - rhnB Synpcc7942_0879 0.64 -0.4 886,714 - rhnB Synpcc7942_0879 0.72 +2.0 886,714 - rhnB Synpcc7942_0879 0.72 -0.1 886,777 - rhnB Synpcc7942_0879 0.82 +0.2 886,788 + rhnB Synpcc7942_0879 0.84 -0.1 886,788 + rhnB Synpcc7942_0879 0.84 +0.2 886,788 + rhnB Synpcc7942_0879 0.84 +0.7 886,794 - rhnB Synpcc7942_0879 0.85 +0.9 886,796 - rhnB Synpcc7942_0879 0.85 +0.7 886,835 - -0.1 886,838 + +2.2 886,881 + +0.2 886,886 + -2.7 886,886 + -1.4 886,889 - -0.2 886,889 - -1.1 886,946 + -0.3 887,024 + Synpcc7942_0880 0.20 +1.2 887,024 + Synpcc7942_0880 0.20 -0.3 887,024 + Synpcc7942_0880 0.20 +3.0 887,032 - +1.9 887,032 - Synpcc7942_0880 0.21 -1.3 887,032 - Synpcc7942_0880 0.21 -0.1 887,042 - Synpcc7942_0880 0.23 +0.8 887,048 + Synpcc7942_0880 0.24 +0.2 887,090 + Synpcc7942_0880 0.31 +1.0 887,117 + Synpcc7942_0880 0.36 +0.8 887,123 + Synpcc7942_0880 0.37 +1.4 887,123 + Synpcc7942_0880 0.37 -0.3 887,123 + Synpcc7942_0880 0.37 +1.0 887,123 - Synpcc7942_0880 0.37 +1.1 887,191 - Synpcc7942_0880 0.49 +1.6 887,262 + Synpcc7942_0880 0.62 +1.5 887,303 - Synpcc7942_0880 0.70 +0.4 887,332 + Synpcc7942_0880 0.75 -0.1 887,332 + Synpcc7942_0880 0.75 +0.8 887,354 + Synpcc7942_0880 0.79 +0.4 887,356 + Synpcc7942_0880 0.79 -0.5 887,356 + Synpcc7942_0880 0.79 +0.9 887,356 + Synpcc7942_0880 0.79 +0.3 887,362 - Synpcc7942_0880 0.80 +0.2 887,362 - Synpcc7942_0880 0.80 +0.1 887,393 + Synpcc7942_0880 0.86 +0.7 887,396 - Synpcc7942_0880 0.86 +1.2 887,406 - Synpcc7942_0880 0.88 +0.9 887,540 - +0.9 887,542 + +0.6 887,556 - -1.7 887,556 - -1.1 888,387 + -0.2 888,387 + -0.1 888,395 - -1.1 888,395 - -1.1 888,395 - +0.5 888,445 - +0.9
Or see this region's nucleotide sequence