Strain Fitness in Synechococcus elongatus PCC 7942 around Synpcc7942_0862

Experiment: D-Cycloserine 0.015625 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSynpcc7942_0861 and Synpcc7942_0862 are separated by 126 nucleotidesSynpcc7942_0862 and Synpcc7942_0863 are separated by 53 nucleotides Synpcc7942_0861: Synpcc7942_0861 - bifunctional sterol desaturase/short chain dehydrogenase, at 864,180 to 865,469 _0861 Synpcc7942_0862: Synpcc7942_0862 - hypothetical protein, at 865,596 to 865,973 _0862 Synpcc7942_0863: Synpcc7942_0863 - hypothetical protein, at 866,027 to 867,208 _0863 Position (kb) 865 866Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3at 865.461 kb on - strandat 865.528 kb on - strandat 865.549 kb on + strandat 865.557 kb on - strandat 865.558 kb on + strandat 865.562 kb on - strandat 865.576 kb on + strandat 865.576 kb on - strandat 865.576 kb on - strandat 865.582 kb on - strandat 865.583 kb on - strandat 865.587 kb on + strandat 865.608 kb on + strandat 865.610 kb on + strandat 865.613 kb on + strandat 865.621 kb on - strandat 865.621 kb on - strandat 865.625 kb on + strandat 865.625 kb on + strandat 865.635 kb on + strand, within Synpcc7942_0862at 865.643 kb on + strand, within Synpcc7942_0862at 865.643 kb on + strand, within Synpcc7942_0862at 865.643 kb on + strand, within Synpcc7942_0862at 865.643 kb on - strand, within Synpcc7942_0862at 865.643 kb on - strand, within Synpcc7942_0862at 865.651 kb on - strand, within Synpcc7942_0862at 865.651 kb on - strand, within Synpcc7942_0862at 865.651 kb on - strand, within Synpcc7942_0862at 865.656 kb on - strand, within Synpcc7942_0862at 865.660 kb on - strand, within Synpcc7942_0862at 865.665 kb on - strand, within Synpcc7942_0862at 865.681 kb on + strand, within Synpcc7942_0862at 865.688 kb on - strand, within Synpcc7942_0862at 865.694 kb on - strand, within Synpcc7942_0862at 865.704 kb on + strand, within Synpcc7942_0862at 865.712 kb on - strand, within Synpcc7942_0862at 865.719 kb on + strand, within Synpcc7942_0862at 865.724 kb on + strand, within Synpcc7942_0862at 865.725 kb on - strand, within Synpcc7942_0862at 865.727 kb on + strand, within Synpcc7942_0862at 865.727 kb on - strand, within Synpcc7942_0862at 865.727 kb on - strand, within Synpcc7942_0862at 865.727 kb on - strand, within Synpcc7942_0862at 865.737 kb on + strand, within Synpcc7942_0862at 865.737 kb on + strand, within Synpcc7942_0862at 865.745 kb on - strand, within Synpcc7942_0862at 865.777 kb on - strand, within Synpcc7942_0862at 865.797 kb on + strand, within Synpcc7942_0862at 865.797 kb on + strand, within Synpcc7942_0862at 865.805 kb on - strand, within Synpcc7942_0862at 865.812 kb on + strand, within Synpcc7942_0862at 865.820 kb on + strand, within Synpcc7942_0862at 865.820 kb on + strand, within Synpcc7942_0862at 865.823 kb on - strand, within Synpcc7942_0862at 865.826 kb on - strand, within Synpcc7942_0862at 865.828 kb on - strand, within Synpcc7942_0862at 865.836 kb on + strand, within Synpcc7942_0862at 865.844 kb on - strand, within Synpcc7942_0862at 865.888 kb on - strand, within Synpcc7942_0862at 865.903 kb on + strand, within Synpcc7942_0862at 865.903 kb on - strand, within Synpcc7942_0862at 865.972 kb on + strandat 865.982 kb on - strandat 866.035 kb on + strandat 866.035 kb on + strandat 866.038 kb on - strandat 866.045 kb on - strandat 866.047 kb on + strandat 866.047 kb on + strandat 866.053 kb on - strandat 866.094 kb on - strandat 866.112 kb on + strandat 866.126 kb on + strandat 866.147 kb on + strand, within Synpcc7942_0863at 866.188 kb on + strand, within Synpcc7942_0863at 866.221 kb on + strand, within Synpcc7942_0863at 866.229 kb on - strand, within Synpcc7942_0863at 866.236 kb on - strand, within Synpcc7942_0863at 866.241 kb on + strand, within Synpcc7942_0863at 866.249 kb on - strand, within Synpcc7942_0863at 866.249 kb on - strand, within Synpcc7942_0863at 866.249 kb on - strand, within Synpcc7942_0863at 866.256 kb on + strand, within Synpcc7942_0863at 866.283 kb on + strand, within Synpcc7942_0863at 866.310 kb on + strand, within Synpcc7942_0863at 866.332 kb on + strand, within Synpcc7942_0863at 866.332 kb on + strand, within Synpcc7942_0863at 866.387 kb on - strand, within Synpcc7942_0863at 866.390 kb on + strand, within Synpcc7942_0863at 866.397 kb on - strand, within Synpcc7942_0863at 866.412 kb on + strand, within Synpcc7942_0863at 866.423 kb on - strand, within Synpcc7942_0863at 866.456 kb on - strand, within Synpcc7942_0863at 866.458 kb on + strand, within Synpcc7942_0863at 866.458 kb on + strandat 866.466 kb on - strand, within Synpcc7942_0863at 866.474 kb on - strand, within Synpcc7942_0863at 866.491 kb on + strand, within Synpcc7942_0863at 866.507 kb on - strand, within Synpcc7942_0863at 866.525 kb on + strand, within Synpcc7942_0863at 866.525 kb on + strand, within Synpcc7942_0863at 866.533 kb on - strand, within Synpcc7942_0863at 866.533 kb on - strand, within Synpcc7942_0863at 866.560 kb on + strand, within Synpcc7942_0863at 866.583 kb on - strand, within Synpcc7942_0863at 866.617 kb on + strand, within Synpcc7942_0863at 866.617 kb on + strand, within Synpcc7942_0863at 866.632 kb on + strand, within Synpcc7942_0863at 866.632 kb on + strand, within Synpcc7942_0863at 866.640 kb on - strand, within Synpcc7942_0863at 866.640 kb on - strandat 866.644 kb on + strand, within Synpcc7942_0863at 866.655 kb on + strand, within Synpcc7942_0863at 866.663 kb on - strand, within Synpcc7942_0863at 866.684 kb on - strand, within Synpcc7942_0863at 866.733 kb on + strand, within Synpcc7942_0863at 866.738 kb on + strand, within Synpcc7942_0863at 866.738 kb on + strand, within Synpcc7942_0863at 866.746 kb on - strand, within Synpcc7942_0863at 866.757 kb on + strandat 866.765 kb on - strand, within Synpcc7942_0863at 866.765 kb on - strand, within Synpcc7942_0863at 866.776 kb on + strand, within Synpcc7942_0863at 866.776 kb on + strand, within Synpcc7942_0863at 866.776 kb on + strand, within Synpcc7942_0863at 866.789 kb on - strand, within Synpcc7942_0863at 866.789 kb on - strand, within Synpcc7942_0863at 866.822 kb on + strand, within Synpcc7942_0863at 866.822 kb on + strand, within Synpcc7942_0863at 866.882 kb on + strand, within Synpcc7942_0863at 866.890 kb on - strand, within Synpcc7942_0863at 866.890 kb on - strand, within Synpcc7942_0863at 866.890 kb on - strand, within Synpcc7942_0863at 866.890 kb on - strand, within Synpcc7942_0863at 866.890 kb on - strand, within Synpcc7942_0863at 866.902 kb on + strand, within Synpcc7942_0863

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Cycloserine 0.015625 mg/ml
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865,461 - +0.5
865,528 - -0.4
865,549 + +2.9
865,557 - -0.0
865,558 + -1.0
865,562 - -2.2
865,576 + -1.2
865,576 - -1.5
865,576 - -1.7
865,582 - -1.0
865,583 - +0.5
865,587 + -0.5
865,608 + -2.5
865,610 + -0.1
865,613 + -3.4
865,621 - -0.5
865,621 - -2.5
865,625 + -1.9
865,625 + -4.5
865,635 + Synpcc7942_0862 0.10 -1.4
865,643 + Synpcc7942_0862 0.12 -3.1
865,643 + Synpcc7942_0862 0.12 -3.1
865,643 + Synpcc7942_0862 0.12 -1.5
865,643 - Synpcc7942_0862 0.12 -2.6
865,643 - Synpcc7942_0862 0.12 -3.1
865,651 - Synpcc7942_0862 0.15 -0.5
865,651 - Synpcc7942_0862 0.15 -2.9
865,651 - Synpcc7942_0862 0.15 -4.3
865,656 - Synpcc7942_0862 0.16 -1.9
865,660 - Synpcc7942_0862 0.17 -2.8
865,665 - Synpcc7942_0862 0.18 -2.5
865,681 + Synpcc7942_0862 0.22 -2.6
865,688 - Synpcc7942_0862 0.24 +0.1
865,694 - Synpcc7942_0862 0.26 -0.4
865,704 + Synpcc7942_0862 0.29 -1.4
865,712 - Synpcc7942_0862 0.31 -3.1
865,719 + Synpcc7942_0862 0.33 -3.7
865,724 + Synpcc7942_0862 0.34 -4.0
865,725 - Synpcc7942_0862 0.34 -2.7
865,727 + Synpcc7942_0862 0.35 -3.0
865,727 - Synpcc7942_0862 0.35 -1.5
865,727 - Synpcc7942_0862 0.35 -1.4
865,727 - Synpcc7942_0862 0.35 -3.1
865,737 + Synpcc7942_0862 0.37 -3.5
865,737 + Synpcc7942_0862 0.37 -1.5
865,745 - Synpcc7942_0862 0.39 -1.1
865,777 - Synpcc7942_0862 0.48 -3.0
865,797 + Synpcc7942_0862 0.53 -2.6
865,797 + Synpcc7942_0862 0.53 +0.3
865,805 - Synpcc7942_0862 0.55 -0.5
865,812 + Synpcc7942_0862 0.57 -2.1
865,820 + Synpcc7942_0862 0.59 -3.4
865,820 + Synpcc7942_0862 0.59 -2.0
865,823 - Synpcc7942_0862 0.60 -2.5
865,826 - Synpcc7942_0862 0.61 -3.6
865,828 - Synpcc7942_0862 0.61 -3.7
865,836 + Synpcc7942_0862 0.63 -2.1
865,844 - Synpcc7942_0862 0.66 -2.0
865,888 - Synpcc7942_0862 0.77 -1.6
865,903 + Synpcc7942_0862 0.81 -4.4
865,903 - Synpcc7942_0862 0.81 -0.7
865,972 + +0.2
865,982 - -1.8
866,035 + +0.6
866,035 + -0.5
866,038 - -0.3
866,045 - -0.7
866,047 + -1.4
866,047 + -0.1
866,053 - -0.1
866,094 - -1.9
866,112 + -2.5
866,126 + -0.1
866,147 + Synpcc7942_0863 0.10 -2.2
866,188 + Synpcc7942_0863 0.14 -1.0
866,221 + Synpcc7942_0863 0.16 -0.3
866,229 - Synpcc7942_0863 0.17 -1.1
866,236 - Synpcc7942_0863 0.18 +0.2
866,241 + Synpcc7942_0863 0.18 -1.9
866,249 - Synpcc7942_0863 0.19 -1.1
866,249 - Synpcc7942_0863 0.19 -0.7
866,249 - Synpcc7942_0863 0.19 -2.7
866,256 + Synpcc7942_0863 0.19 -1.8
866,283 + Synpcc7942_0863 0.22 -2.1
866,310 + Synpcc7942_0863 0.24 -1.0
866,332 + Synpcc7942_0863 0.26 -0.1
866,332 + Synpcc7942_0863 0.26 -0.1
866,387 - Synpcc7942_0863 0.30 -3.1
866,390 + Synpcc7942_0863 0.31 -2.5
866,397 - Synpcc7942_0863 0.31 -2.0
866,412 + Synpcc7942_0863 0.33 -1.1
866,423 - Synpcc7942_0863 0.34 +0.6
866,456 - Synpcc7942_0863 0.36 -3.2
866,458 + Synpcc7942_0863 0.36 -1.5
866,458 + -0.7
866,466 - Synpcc7942_0863 0.37 -1.5
866,474 - Synpcc7942_0863 0.38 -1.1
866,491 + Synpcc7942_0863 0.39 +0.1
866,507 - Synpcc7942_0863 0.41 -1.4
866,525 + Synpcc7942_0863 0.42 -2.0
866,525 + Synpcc7942_0863 0.42 -1.0
866,533 - Synpcc7942_0863 0.43 -2.5
866,533 - Synpcc7942_0863 0.43 -1.3
866,560 + Synpcc7942_0863 0.45 -0.1
866,583 - Synpcc7942_0863 0.47 -2.5
866,617 + Synpcc7942_0863 0.50 -0.5
866,617 + Synpcc7942_0863 0.50 +0.9
866,632 + Synpcc7942_0863 0.51 -1.1
866,632 + Synpcc7942_0863 0.51 -0.1
866,640 - Synpcc7942_0863 0.52 +0.9
866,640 - -1.7
866,644 + Synpcc7942_0863 0.52 -2.1
866,655 + Synpcc7942_0863 0.53 -1.1
866,663 - Synpcc7942_0863 0.54 -1.9
866,684 - Synpcc7942_0863 0.56 -2.1
866,733 + Synpcc7942_0863 0.60 -0.6
866,738 + Synpcc7942_0863 0.60 +0.3
866,738 + Synpcc7942_0863 0.60 -1.1
866,746 - Synpcc7942_0863 0.61 -0.8
866,757 + +0.5
866,765 - Synpcc7942_0863 0.62 -2.1
866,765 - Synpcc7942_0863 0.62 -2.2
866,776 + Synpcc7942_0863 0.63 -0.5
866,776 + Synpcc7942_0863 0.63 +0.9
866,776 + Synpcc7942_0863 0.63 -1.1
866,789 - Synpcc7942_0863 0.64 -1.0
866,789 - Synpcc7942_0863 0.64 +0.1
866,822 + Synpcc7942_0863 0.67 -0.2
866,822 + Synpcc7942_0863 0.67 -1.9
866,882 + Synpcc7942_0863 0.72 -3.5
866,890 - Synpcc7942_0863 0.73 -2.3
866,890 - Synpcc7942_0863 0.73 -1.7
866,890 - Synpcc7942_0863 0.73 -1.7
866,890 - Synpcc7942_0863 0.73 -3.5
866,890 - Synpcc7942_0863 0.73 -2.1
866,902 + Synpcc7942_0863 0.74 -1.7

Or see this region's nucleotide sequence